View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17179_high_16 (Length: 380)
Name: NF17179_high_16
Description: NF17179
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17179_high_16 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 321; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 18 - 380
Target Start/End: Complemental strand, 46309569 - 46309203
Alignment:
| Q |
18 |
ataaagccatttacattctgcaaatctgattccgagacaatcatagtttgtcaactacacgcacacacatcataacacataaacacaatagattaaaatt |
117 |
Q |
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| T |
46309569 |
ataaagccatttacattctgcaaatctgattccaagacaatcatagtttgtcaattacacgcacacacatcataacacataaacacagtagattaaaatt |
46309470 |
T |
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| Q |
118 |
tatactaaagatatcaaacaacaactcataacacaaaatacgccttcaccgtgtagtgttgatgctacataggtcaaataggttgtggaacaaattttca |
217 |
Q |
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| T |
46309469 |
tatactaaagatatcaaacaacaactcatcacacaaaatacgccttcaccgtgtagtgttgatgctacataggtcaaataggttgtggaacaaattttca |
46309370 |
T |
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| Q |
218 |
aaaca---agaaactttaattaccacaggacataaactccataaatactaacgccatatcttgccaaaaatttccaacataaacacat-aaggtgttgct |
313 |
Q |
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| T |
46309369 |
aaacaagaagaaactttaattaccacaggacataaactccataaatactaaagccatatcttgccaaaaatttccaacataaacacataaaggtgttgct |
46309270 |
T |
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| Q |
314 |
atttaattacaccatacaaccatatcaacagtcacaaaataagcgtcgatccaaaaagtaaaataat |
380 |
Q |
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| T |
46309269 |
atttaattacaccatacaaccatatcaacggtcacaaaataagcgtcgatccaaaaagtaaaataat |
46309203 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 270 - 380
Target Start/End: Complemental strand, 46309204 - 46309094
Alignment:
| Q |
270 |
atatcttgccaaaaatttccaacataaacacataaggtgttgctatttaattacaccatacaaccatatcaacagtcacaaaataagcgtcgatccaaaa |
369 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||| |
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| T |
46309204 |
atatcttgccaaaagtttccaacataaacacataaggtgttgctatttaattacaccatacaaccatatcaccgttcacaaaataagcgtcgatccaaaa |
46309105 |
T |
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| Q |
370 |
agtaaaataat |
380 |
Q |
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| T |
46309104 |
agtaaaataat |
46309094 |
T |
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