View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17179_high_18 (Length: 360)
Name: NF17179_high_18
Description: NF17179
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17179_high_18 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 226; Significance: 1e-124; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 16 - 253
Target Start/End: Complemental strand, 4617846 - 4617609
Alignment:
| Q |
16 |
ctgtgatgaatttttgttcatcgactgtttcctttctttttgtagctcttgctgtcagagatacactcgagtcacaatgcaaggagtcacaacataaaat |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
4617846 |
ctgtgatgaatttttgttcatcgactgtttcctttctttttgtagctcttgctgtcagagatacgctcgagtcacaatgcaaggagtcacaacataaaat |
4617747 |
T |
|
| Q |
116 |
tgatttaatgcttatacattactacaattgtttgttctcaaacatgccttgaatttgaggaagcattatcaaagaacaaggatgtctttgaagcatataa |
215 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4617746 |
tgatttaatgtttatacattactacaattgtttgttctcaaacatgccttgaatttgaggaagcattatcaaagaacaaggatgtctttgaagcatataa |
4617647 |
T |
|
| Q |
216 |
acaaaagaacaatgatgtatttgaaacatgtaaacaaa |
253 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
4617646 |
acaaaagaacaatgatgtatttgaaacatataaacaaa |
4617609 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 143; E-Value: 5e-75
Query Start/End: Original strand, 186 - 344
Target Start/End: Complemental strand, 4617643 - 4617485
Alignment:
| Q |
186 |
aaagaacaaggatgtctttgaagcatataaacaaaagaacaatgatgtatttgaaacatgtaaacaaagagattgataaggtaaacttaattttcataat |
285 |
Q |
| |
|
||||||||| ||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4617643 |
aaagaacaatgatgtatttgaaacatataaacaaaagaacaatgatgtatttgaaacatgtaaacaaagagattgataaggtaaacttaattttcataaa |
4617544 |
T |
|
| Q |
286 |
tatttatttcatttgttctaatcatatttgcttgaatcatatatatcatatctacttgg |
344 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4617543 |
tatttatttcatttgttctaatcatatttgcttgaatcatatatatcatatctacttgg |
4617485 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 59; Significance: 6e-25; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 219 - 332
Target Start/End: Complemental strand, 26979040 - 26978932
Alignment:
| Q |
219 |
aaagaacaatgatgtatttgaaacatgtaaacaaagagattgataaggtaaacttaattt-tcataattatttatttcatttgttctaatcatatttgct |
317 |
Q |
| |
|
|||||||||||||||| ||||||||| ||||| ||||||||| |||||||||||||||| |||||| |||||||||||||||||||| ||||||| |
|
|
| T |
26979040 |
aaagaacaatgatgtaattgaaacatttaaac-tagagattgagaaggtaaacttaatttctcataa-----tatttcatttgttctaatcacatttgct |
26978947 |
T |
|
| Q |
318 |
tgaatcatatatatc |
332 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
26978946 |
tgaatcatatatatc |
26978932 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 24 - 78
Target Start/End: Original strand, 45985725 - 45985779
Alignment:
| Q |
24 |
aatttttgttcatcgactgtttcctttctttttgtagctcttgctgtcagagata |
78 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
45985725 |
aatttttgttcatcgactgtttcctttctttttgtagctcttgctggcagagata |
45985779 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 219 - 327
Target Start/End: Complemental strand, 43034165 - 43034061
Alignment:
| Q |
219 |
aaagaacaatgatgtatttgaaacatgtaaacaaagagattgataaggtaaacttaattt-tcataattatttatttcatttgttctaatcatatttgct |
317 |
Q |
| |
|
||||| |||||||||||||||||||| ||||| |||||||||| ||||||||||| |||| || ||| |||||||||| ||| ||||||||||||| |
|
|
| T |
43034165 |
aaagagcaatgatgtatttgaaacatttaaac-aagagattgagaaggtaaacttgatttctc----ttaaatatttcattttttcaaatcatatttgct |
43034071 |
T |
|
| Q |
318 |
tgaatcatat |
327 |
Q |
| |
|
|||||||||| |
|
|
| T |
43034070 |
tgaatcatat |
43034061 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 24 - 102
Target Start/End: Complemental strand, 43038450 - 43038372
Alignment:
| Q |
24 |
aatttttgttcatcgactgtttcctttctttttgtagctcttgctgtcagagatacactcgagtcacaatgcaaggagt |
102 |
Q |
| |
|
||||||||||||| ||||| ||| || |||||||||||| |||| |||||||||| || ||||||| ||||| ||||| |
|
|
| T |
43038450 |
aatttttgttcattgactgcttcattcctttttgtagcttttgccgtcagagataagcttgagtcactatgcagggagt |
43038372 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 290 - 332
Target Start/End: Original strand, 48507009 - 48507051
Alignment:
| Q |
290 |
tatttcatttgttctaatcatatttgcttgaatcatatatatc |
332 |
Q |
| |
|
||||| ||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
48507009 |
tattttatttgttctaatcatatttgcttaaatcatatatatc |
48507051 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 27 - 75
Target Start/End: Original strand, 39242839 - 39242887
Alignment:
| Q |
27 |
ttttgttcatcgactgtttcctttctttttgtagctcttgctgtcagag |
75 |
Q |
| |
|
|||||||||| ||||||||||| || ||||||||||||||||||||||| |
|
|
| T |
39242839 |
ttttgttcattgactgtttcctctccttttgtagctcttgctgtcagag |
39242887 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University