View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17179_high_21 (Length: 326)
Name: NF17179_high_21
Description: NF17179
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17179_high_21 |
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Alignment Details
Target: chr2 (Bit Score: 149; Significance: 1e-78; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 17 - 165
Target Start/End: Complemental strand, 41637902 - 41637754
Alignment:
| Q |
17 |
atattaaataaactccaattctatacacatagtaatcagccaacgaataaacaagatacaatttgatatttttgtcaaatcaaacaagcttaacccacca |
116 |
Q |
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| T |
41637902 |
atattaaataaactccaattctatacacatagtaatcagccaacgaataaacaagatacaatttgatatttttgtcaaatcaaacaagcttaacccacca |
41637803 |
T |
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| Q |
117 |
gtgatgtagtcgccttcatgcggacggaagacatatacactctacatgt |
165 |
Q |
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| T |
41637802 |
gtgatgtagtcgccttcatgcggacggaagacatatacactctacatgt |
41637754 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 146; E-Value: 7e-77
Query Start/End: Original strand, 163 - 308
Target Start/End: Complemental strand, 41637593 - 41637448
Alignment:
| Q |
163 |
tgtggtgatgttatgtgttgttagaccattgttttactttgtagcggccaccatggccacaaaagtagaacaatatgcaatctccatcttccatggctaa |
262 |
Q |
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| T |
41637593 |
tgtggtgatgttatgtgttgttagaccattgttttactttgtagcggccaccatggccacaaaagtagaacaatatgcaatctccatcttccatggctaa |
41637494 |
T |
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| Q |
263 |
gatcatgtcctctagtttgttaagaaccattggtgaggttggattc |
308 |
Q |
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| T |
41637493 |
gatcatgtcctctagtttgttaagaaccattggtgaggttggattc |
41637448 |
T |
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