View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17179_high_26 (Length: 279)
Name: NF17179_high_26
Description: NF17179
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17179_high_26 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 207; Significance: 1e-113; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 1 - 261
Target Start/End: Complemental strand, 4473530 - 4473274
Alignment:
| Q |
1 |
ttatagttatgcttccttcaaccctacttattagatccgttgaaaaaatnnnnnnnnnnnnnnncacttagagaagtaatttttgtgaaatcataactta |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
4473530 |
ttatagttatgcttccttcaaccctacttattagatccgttgaaaaaatgagagagagag----cacttagagaagtaatttttgtgaaatcataactta |
4473435 |
T |
|
| Q |
101 |
caacacagtacgtagtaggcagaatcgagcatcatccatattaaaaatacgtttcatgttgaaattgatgtaaaacaacactttagaaatatgaatttca |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4473434 |
caacacagtacgtagtaggcagaatcgagcatcatccatattaaaaatacgtttcatgttgaaattgatgtaaaacaacactttagaaatatgaatttca |
4473335 |
T |
|
| Q |
201 |
ttgccaacatacacgaaaaatccatttaactcatgatttgcataatttaaacgaccaattt |
261 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
4473334 |
ttgccaacatacacgaaaaatccatttaactcatgatttgcataacttaaacgaccaattt |
4473274 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University