View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17179_high_33 (Length: 235)

Name: NF17179_high_33
Description: NF17179
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17179_high_33
NF17179_high_33
[»] chr8 (2 HSPs)
chr8 (65-219)||(41851207-41851361)
chr8 (7-48)||(41851170-41851211)
[»] chr4 (1 HSPs)
chr4 (127-200)||(49559631-49559704)
[»] chr6 (1 HSPs)
chr6 (127-198)||(6562808-6562879)
[»] chr3 (1 HSPs)
chr3 (156-199)||(33229668-33229711)


Alignment Details
Target: chr8 (Bit Score: 151; Significance: 5e-80; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 65 - 219
Target Start/End: Original strand, 41851207 - 41851361
Alignment:
Q  65 tgttggtgaggttgaatcatgtatgaattttatgtcaaaattttggacaaatgttgaatgattttgaatttagatgaatgccacaagttttatgtcattt 164  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  41851207 tgttggtgaggttgaatcatgtatgaattttatgtcaaaattttggacaaatgttgaatgattttgaatttagatgaatggcacaagttttatgtcattt 41851306  T
Q  165 tcaatgttgaatgaattttaagtgttcaatgtgtttgagctttgagcatgttatg 219  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41851307 tcaatgttgaatgaattttaagtgttcaatgtgtttgagctttgagcatgttatg 41851361  T

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Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 7 - 48
Target Start/End: Original strand, 41851170 - 41851211
Alignment:
Q  7 gagtgagatgaaatgctggaatgaatagttaattttgtgttg 48  Q
    ||||| ||||||||||||||||||||||||||||||||||||    
T  41851170 gagtgtgatgaaatgctggaatgaatagttaattttgtgttg 41851211  T

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Target: chr4 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 127 - 200
Target Start/End: Original strand, 49559631 - 49559704
Alignment:
Q  127 tttgaatttagatgaatgccacaagttttatgtcattttcaatgttgaatgaattttaagtgttcaatgtgttt 200  Q
    ||||||||||  |||||| |||||||||||||||||||| |||||||||| |||||| |||||| |||||||||    
T  49559631 tttgaatttatttgaatgtcacaagttttatgtcattttgaatgttgaataaattttgagtgttgaatgtgttt 49559704  T

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Target: chr6 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 127 - 198
Target Start/End: Original strand, 6562808 - 6562879
Alignment:
Q  127 tttgaatttagatgaatgccacaagttttatgtcattttcaatgttgaatgaattttaagtgttcaatgtgt 198  Q
    ||||||||||| |||||| ||||| |||||| ||||||| |||||| ||| |||||| |||||| |||||||    
T  6562808 tttgaatttagttgaatgtcacaaattttatatcattttaaatgttcaataaattttgagtgttgaatgtgt 6562879  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 156 - 199
Target Start/End: Original strand, 33229668 - 33229711
Alignment:
Q  156 atgtcattttcaatgttgaatgaattttaagtgttcaatgtgtt 199  Q
    |||||||||| ||||||||||||||||| |||||| ||||||||    
T  33229668 atgtcattttgaatgttgaatgaattttgagtgttgaatgtgtt 33229711  T

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