View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17179_high_35 (Length: 224)

Name: NF17179_high_35
Description: NF17179
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17179_high_35
NF17179_high_35
[»] chr3 (11 HSPs)
chr3 (35-224)||(39671103-39671310)
chr3 (162-224)||(39020165-39020229)
chr3 (187-224)||(44677490-44677527)
chr3 (163-224)||(10206979-10207048)
chr3 (187-224)||(24482969-24483006)
chr3 (187-224)||(32767704-32767741)
chr3 (187-224)||(33375888-33375925)
chr3 (167-223)||(36121826-36121885)
chr3 (187-224)||(49363257-49363294)
chr3 (187-224)||(50206976-50207013)
chr3 (188-224)||(46253651-46253687)
[»] chr6 (5 HSPs)
chr6 (167-224)||(14986751-14986812)
chr6 (187-224)||(11547535-11547572)
chr6 (187-224)||(13143388-13143425)
chr6 (189-224)||(2777322-2777357)
chr6 (187-224)||(30152536-30152573)
[»] scaffold0204 (1 HSPs)
scaffold0204 (167-224)||(23086-23141)
[»] chr4 (15 HSPs)
chr4 (167-224)||(48335564-48335619)
chr4 (186-224)||(41262351-41262389)
chr4 (187-224)||(439266-439303)
chr4 (187-224)||(39344986-39345023)
chr4 (166-222)||(25318073-25318128)
chr4 (185-221)||(47240843-47240879)
chr4 (185-224)||(6141784-6141823)
chr4 (165-224)||(22819647-22819714)
chr4 (164-224)||(31275151-31275210)
chr4 (187-224)||(624318-624355)
chr4 (187-224)||(5932163-5932200)
chr4 (187-224)||(9118870-9118907)
chr4 (191-224)||(26206983-26207016)
chr4 (187-224)||(30079874-30079911)
chr4 (163-218)||(35820174-35820230)
[»] chr7 (7 HSPs)
chr7 (165-222)||(46773650-46773715)
chr7 (187-224)||(32815196-32815233)
chr7 (187-220)||(37808774-37808807)
chr7 (164-221)||(21822608-21822673)
chr7 (164-224)||(39231734-39231802)
chr7 (164-223)||(26749014-26749068)
chr7 (191-224)||(40353296-40353329)
[»] chr2 (7 HSPs)
chr2 (168-223)||(13265975-13266029)
chr2 (164-223)||(29684619-29684686)
chr2 (187-224)||(13347821-13347858)
chr2 (187-224)||(35589393-35589430)
chr2 (167-220)||(17779391-17779447)
chr2 (191-224)||(433882-433915)
chr2 (187-224)||(18176968-18177005)
[»] chr1 (12 HSPs)
chr1 (160-221)||(38303697-38303755)
chr1 (187-224)||(44294043-44294080)
chr1 (189-224)||(20565124-20565159)
chr1 (189-224)||(29586023-29586058)
chr1 (167-224)||(47398458-47398511)
chr1 (189-223)||(26837482-26837516)
chr1 (187-224)||(1852957-1852994)
chr1 (187-224)||(3603139-3603176)
chr1 (187-224)||(8411724-8411761)
chr1 (187-224)||(9008253-9008290)
chr1 (187-224)||(33024577-33024614)
chr1 (187-224)||(36577418-36577455)
[»] chr8 (9 HSPs)
chr8 (187-224)||(33589236-33589273)
chr8 (187-224)||(34018836-34018873)
chr8 (163-224)||(41520964-41521033)
chr8 (187-224)||(1633896-1633933)
chr8 (187-224)||(11017833-11017870)
chr8 (187-224)||(11658006-11658043)
chr8 (187-224)||(16966813-16966850)
chr8 (187-224)||(45529252-45529289)
chr8 (188-224)||(7956013-7956049)
[»] chr5 (9 HSPs)
chr5 (187-224)||(8267826-8267863)
chr5 (164-224)||(8675439-8675507)
chr5 (168-218)||(2688998-2689047)
chr5 (165-224)||(5042246-5042313)
chr5 (165-224)||(23126349-23126416)
chr5 (187-220)||(5821622-5821655)
chr5 (187-224)||(21064232-21064269)
chr5 (187-224)||(35099011-35099048)
chr5 (188-224)||(16437571-16437607)
[»] scaffold0321 (1 HSPs)
scaffold0321 (187-224)||(19664-19701)


Alignment Details
Target: chr3 (Bit Score: 127; Significance: 1e-65; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 35 - 224
Target Start/End: Complemental strand, 39671310 - 39671103
Alignment:
Q  35 tcattttaaacctaactcaaattcacacatgaaaagtattctcctccaagaccaacaaacgacatatactccaaacccct---------tacatgcacct 125  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||         |||||||||||    
T  39671310 tcattctaaacctaactcaaattcacacatgaaaagtattctcctccaagaccaacaaacgacatatactccaaaccccttactaaatatacatgcacct 39671211  T
Q  126 aacacattttaatagccaaaatataaagtctattagataaagagaaatgatatttgaacat--------tgacaatttttgcaacaattttctctc-tca 216  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        |||||| ||||||||||| |||||||| |||    
T  39671210 aacacattttaatagccaaaatataaagtctattagataaagagaaatgatatttgaacatctatttagtgacaacttttgcaacaactttctctcttca 39671111  T
Q  217 tactcaca 224  Q
    ||||||||    
T  39671110 tactcaca 39671103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 162 - 224
Target Start/End: Complemental strand, 39020229 - 39020165
Alignment:
Q  162 ataaagagaaatgatatttgaacatt--gacaatttttgcaacaattttctctctcatactcaca 224  Q
    ||||||||||||||||||||||||||  ||||| |||| ||| || ||| |||||||||||||||    
T  39020229 ataaagagaaatgatatttgaacattcagacaacttttacaataactttttctctcatactcaca 39020165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 187 - 224
Target Start/End: Complemental strand, 44677527 - 44677490
Alignment:
Q  187 tgacaatttttgcaacaattttctctctcatactcaca 224  Q
    |||||| |||||||||||||||||||||||||||||||    
T  44677527 tgacaacttttgcaacaattttctctctcatactcaca 44677490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 163 - 224
Target Start/End: Complemental strand, 10207048 - 10206979
Alignment:
Q  163 taaagagaaatgatatttgaacat--------tgacaatttttgcaacaattttctctctcatactcaca 224  Q
    ||||||||||||||||||||||||        |||||| ||||||||||| |||||||||||||||||||    
T  10207048 taaagagaaatgatatttgaacatccatttagtgacaacttttgcaacaactttctctctcatactcaca 10206979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 187 - 224
Target Start/End: Complemental strand, 24483006 - 24482969
Alignment:
Q  187 tgacaatttttgcaacaattttctctctcatactcaca 224  Q
    |||||| ||||||||||| |||||||||||||||||||    
T  24483006 tgacaacttttgcaacaactttctctctcatactcaca 24482969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 187 - 224
Target Start/End: Original strand, 32767704 - 32767741
Alignment:
Q  187 tgacaatttttgcaacaattttctctctcatactcaca 224  Q
    |||||| |||||||| ||||||||||||||||||||||    
T  32767704 tgacaacttttgcaataattttctctctcatactcaca 32767741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 187 - 224
Target Start/End: Original strand, 33375888 - 33375925
Alignment:
Q  187 tgacaatttttgcaacaattttctctctcatactcaca 224  Q
    |||||| |||| ||||||||||||||||||||||||||    
T  33375888 tgacaacttttacaacaattttctctctcatactcaca 33375925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 167 - 223
Target Start/End: Original strand, 36121826 - 36121885
Alignment:
Q  167 gagaaatgatatttgaacat---tgacaatttttgcaacaattttctctctcatactcac 223  Q
    ||||||||||||||||||||   |||||| ||||||||||| ||||| ||| ||||||||    
T  36121826 gagaaatgatatttgaacataaatgacaacttttgcaacaactttctttcttatactcac 36121885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 187 - 224
Target Start/End: Complemental strand, 49363294 - 49363257
Alignment:
Q  187 tgacaatttttgcaacaattttctctctcatactcaca 224  Q
    |||||| ||||||||||| |||||||||||||||||||    
T  49363294 tgacaacttttgcaacaactttctctctcatactcaca 49363257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 187 - 224
Target Start/End: Complemental strand, 50207013 - 50206976
Alignment:
Q  187 tgacaatttttgcaacaattttctctctcatactcaca 224  Q
    |||||| ||||||||||| |||||||||||||||||||    
T  50207013 tgacaacttttgcaacaactttctctctcatactcaca 50206976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 188 - 224
Target Start/End: Original strand, 46253651 - 46253687
Alignment:
Q  188 gacaatttttgcaacaattttctctctcatactcaca 224  Q
    ||||| ||||||||||||||| |||||||||||||||    
T  46253651 gacaacttttgcaacaattttttctctcatactcaca 46253687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 167 - 224
Target Start/End: Complemental strand, 14986812 - 14986751
Alignment:
Q  167 gagaaatgatatttgaacatt----gacaatttttgcaacaattttctctctcatactcaca 224  Q
    |||||||||||||||||||||    ||||| |||||||||||||||||||||||||||||||    
T  14986812 gagaaatgatatttgaacatttagtgacaacttttgcaacaattttctctctcatactcaca 14986751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 187 - 224
Target Start/End: Complemental strand, 11547572 - 11547535
Alignment:
Q  187 tgacaatttttgcaacaattttctctctcatactcaca 224  Q
    |||||| |||||||||||||||||||||||||||||||    
T  11547572 tgacaacttttgcaacaattttctctctcatactcaca 11547535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 187 - 224
Target Start/End: Complemental strand, 13143425 - 13143388
Alignment:
Q  187 tgacaatttttgcaacaattttctctctcatactcaca 224  Q
    |||||||||||||||||| |||||||||||||||||||    
T  13143425 tgacaatttttgcaacaactttctctctcatactcaca 13143388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 189 - 224
Target Start/End: Complemental strand, 2777357 - 2777322
Alignment:
Q  189 acaatttttgcaacaattttctctctcatactcaca 224  Q
    |||| |||||||||||||||||||||||||||||||    
T  2777357 acaacttttgcaacaattttctctctcatactcaca 2777322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 187 - 224
Target Start/End: Complemental strand, 30152573 - 30152536
Alignment:
Q  187 tgacaatttttgcaacaattttctctctcatactcaca 224  Q
    |||||| ||||||||||| |||||||||||||||||||    
T  30152573 tgacaacttttgcaacaactttctctctcatactcaca 30152536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0204 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: scaffold0204
Description:

Target: scaffold0204; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 167 - 224
Target Start/End: Original strand, 23086 - 23141
Alignment:
Q  167 gagaaatgatatttgaacattgacaatttttgcaacaattttctctctcatactcaca 224  Q
    ||||||||||||| ||||||  |||||||||||||||||||||||||||||| |||||    
T  23086 gagaaatgatattcgaacat--acaatttttgcaacaattttctctctcatattcaca 23141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 167 - 224
Target Start/End: Original strand, 48335564 - 48335619
Alignment:
Q  167 gagaaatgatatttgaacattgacaatttttgcaacaattttctctctcatactcaca 224  Q
    ||||||||||||| ||||||  |||||||||||||||||||||||||||||| |||||    
T  48335564 gagaaatgatattcgaacat--acaatttttgcaacaattttctctctcatattcaca 48335619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 186 - 224
Target Start/End: Complemental strand, 41262389 - 41262351
Alignment:
Q  186 ttgacaatttttgcaacaattttctctctcatactcaca 224  Q
    |||||||||||||||||||||||||||||| ||||||||    
T  41262389 ttgacaatttttgcaacaattttctctctcttactcaca 41262351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 187 - 224
Target Start/End: Complemental strand, 439303 - 439266
Alignment:
Q  187 tgacaatttttgcaacaattttctctctcatactcaca 224  Q
    |||||||||| |||||||||||||||||||||||||||    
T  439303 tgacaattttcgcaacaattttctctctcatactcaca 439266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 187 - 224
Target Start/End: Complemental strand, 39345023 - 39344986
Alignment:
Q  187 tgacaatttttgcaacaattttctctctcatactcaca 224  Q
    |||||||||||||||||| |||||||||||||||||||    
T  39345023 tgacaatttttgcaacaactttctctctcatactcaca 39344986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 166 - 222
Target Start/End: Complemental strand, 25318128 - 25318073
Alignment:
Q  166 agagaaatgatatttgaacattgacaatttttgcaacaattttctctctcatactca 222  Q
    |||||||||||||||||| || || || |||||| ||||||||||||||||||||||    
T  25318128 agagaaatgatatttgaatat-gataacttttgcgacaattttctctctcatactca 25318073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 185 - 221
Target Start/End: Original strand, 47240843 - 47240879
Alignment:
Q  185 attgacaatttttgcaacaattttctctctcatactc 221  Q
    |||||||||||||||||||| ||||||||||||||||    
T  47240843 attgacaatttttgcaacaactttctctctcatactc 47240879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 185 - 224
Target Start/End: Complemental strand, 6141823 - 6141784
Alignment:
Q  185 attgacaatttttgcaacaattttctctctcatactcaca 224  Q
    |||||||| ||||||||||| |||||||||||||||||||    
T  6141823 attgacaacttttgcaacaactttctctctcatactcaca 6141784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 165 - 224
Target Start/End: Original strand, 22819647 - 22819714
Alignment:
Q  165 aagagaaatgatatttgaacat--------tgacaatttttgcaacaattttctctctcatactcaca 224  Q
    ||||||||||||||||||||||        |||||| ||||||||||| |||||||||||||||||||    
T  22819647 aagagaaatgatatttgaacatccattttgtgacaacttttgcaacaactttctctctcatactcaca 22819714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 164 - 224
Target Start/End: Original strand, 31275151 - 31275210
Alignment:
Q  164 aaagagaaatgatatttgaacattgacaa-tttttgcaacaattttctctctcatactcaca 224  Q
    |||||||||||||||||| ||| |||||| ||||||  |||| |||||||||||||||||||    
T  31275151 aaagagaaatgatatttgtacagtgacaactttttg--acaactttctctctcatactcaca 31275210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 187 - 224
Target Start/End: Complemental strand, 624355 - 624318
Alignment:
Q  187 tgacaatttttgcaacaattttctctctcatactcaca 224  Q
    |||||| ||||||||||| |||||||||||||||||||    
T  624355 tgacaacttttgcaacaactttctctctcatactcaca 624318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 187 - 224
Target Start/End: Complemental strand, 5932200 - 5932163
Alignment:
Q  187 tgacaatttttgcaacaattttctctctcatactcaca 224  Q
    |||||| ||||||||||| |||||||||||||||||||    
T  5932200 tgacaacttttgcaacaactttctctctcatactcaca 5932163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 187 - 224
Target Start/End: Complemental strand, 9118907 - 9118870
Alignment:
Q  187 tgacaatttttgcaacaattttctctctcatactcaca 224  Q
    |||||| ||||||||||||||||||||||||| |||||    
T  9118907 tgacaacttttgcaacaattttctctctcataatcaca 9118870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 191 - 224
Target Start/End: Complemental strand, 26207016 - 26206983
Alignment:
Q  191 aatttttgcaacaattttctctctcatactcaca 224  Q
    |||||||||||||||||||||||||||| |||||    
T  26207016 aatttttgcaacaattttctctctcatattcaca 26206983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 187 - 224
Target Start/End: Original strand, 30079874 - 30079911
Alignment:
Q  187 tgacaatttttgcaacaattttctctctcatactcaca 224  Q
    |||||| ||||||||||| |||||||||||||||||||    
T  30079874 tgacaacttttgcaacaactttctctctcatactcaca 30079911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 163 - 218
Target Start/End: Original strand, 35820174 - 35820230
Alignment:
Q  163 taaagagaaatgatatttgaacatt-gacaatttttgcaacaattttctctctcata 218  Q
    |||| ||||||||||||||||||||  |||| |||| |||||| |||||||||||||    
T  35820174 taaacagaaatgatatttgaacattcaacaacttttacaacaactttctctctcata 35820230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 37; Significance: 0.000000000005; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 165 - 222
Target Start/End: Complemental strand, 46773715 - 46773650
Alignment:
Q  165 aagagaaatgatatttgaacat--------tgacaatttttgcaacaattttctctctcatactca 222  Q
    ||||||||||||||||||||||        ||||||||||||||||||||||||||||||||||||    
T  46773715 aagagaaatgatatttgaacatccattcagtgacaatttttgcaacaattttctctctcatactca 46773650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 187 - 224
Target Start/End: Original strand, 32815196 - 32815233
Alignment:
Q  187 tgacaatttttgcaacaattttctctctcatactcaca 224  Q
    |||||||||||||||||||||| |||||||||||||||    
T  32815196 tgacaatttttgcaacaattttttctctcatactcaca 32815233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 187 - 220
Target Start/End: Complemental strand, 37808807 - 37808774
Alignment:
Q  187 tgacaatttttgcaacaattttctctctcatact 220  Q
    ||||||||||||||||||||||||||||||||||    
T  37808807 tgacaatttttgcaacaattttctctctcatact 37808774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 164 - 221
Target Start/End: Complemental strand, 21822673 - 21822608
Alignment:
Q  164 aaagagaaatgatatttgaacat--------tgacaatttttgcaacaattttctctctcatactc 221  Q
    |||||||||||||||||||||||        ||||||||||||||||||| |||||||||||||||    
T  21822673 aaagagaaatgatatttgaacatctattttgtgacaatttttgcaacaatgttctctctcatactc 21822608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 164 - 224
Target Start/End: Complemental strand, 39231802 - 39231734
Alignment:
Q  164 aaagagaaatgatatttgaacat--------tgacaatttttgcaacaattttctctctcatactcaca 224  Q
    |||||||||||||||||||||||        |||||| ||||||||||| |||||||||||||||||||    
T  39231802 aaagagaaatgatatttgaacatccagttagtgacaacttttgcaacaactttctctctcatactcaca 39231734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 164 - 223
Target Start/End: Original strand, 26749014 - 26749068
Alignment:
Q  164 aaagagaaatgatatttgaacattgacaatttttgcaacaattttctctctcatactcac 223  Q
    ||||||||||||||||||||||   ||||||||||  |||| ||||||||||||||||||    
T  26749014 aaagagaaatgatatttgaaca---acaatttttg--acaactttctctctcatactcac 26749068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 191 - 224
Target Start/End: Original strand, 40353296 - 40353329
Alignment:
Q  191 aatttttgcaacaattttctctctcatactcaca 224  Q
    |||||||||||||| |||||||||||||||||||    
T  40353296 aatttttgcaacaactttctctctcatactcaca 40353329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 36; Significance: 0.00000000002; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 168 - 223
Target Start/End: Original strand, 13265975 - 13266029
Alignment:
Q  168 agaaatgatatttgaacattgacaatttttgcaacaattttctctctcatactcac 223  Q
    |||||||||||||| |||   |||||||||||||||||||||||||||||||||||    
T  13265975 agaaatgatatttgtacaac-acaatttttgcaacaattttctctctcatactcac 13266029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 164 - 223
Target Start/End: Complemental strand, 29684686 - 29684619
Alignment:
Q  164 aaagagaaatgatatttgaacatt--------gacaatttttgcaacaattttctctctcatactcac 223  Q
    ||||||||||||||||||||||||        ||||||||||||||||| ||||||||||||||||||    
T  29684686 aaagagaaatgatatttgaacatttatttagtgacaatttttgcaacaactttctctctcatactcac 29684619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 187 - 224
Target Start/End: Complemental strand, 13347858 - 13347821
Alignment:
Q  187 tgacaatttttgcaacaattttctctctcatactcaca 224  Q
    |||||||||||||||||| |||||||||||||||||||    
T  13347858 tgacaatttttgcaacaactttctctctcatactcaca 13347821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 187 - 224
Target Start/End: Complemental strand, 35589430 - 35589393
Alignment:
Q  187 tgacaatttttgcaacaattttctctctcatactcaca 224  Q
    |||||| |||||||||||||||||||||||||||||||    
T  35589430 tgacaacttttgcaacaattttctctctcatactcaca 35589393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 167 - 220
Target Start/End: Original strand, 17779391 - 17779447
Alignment:
Q  167 gagaaatgatatttgaacatt---gacaatttttgcaacaattttctctctcatact 220  Q
    ||||||| |||||||||||||   ||||||||||||||||| ||| |||||||||||    
T  17779391 gagaaataatatttgaacattagtgacaatttttgcaacaactttttctctcatact 17779447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 191 - 224
Target Start/End: Original strand, 433882 - 433915
Alignment:
Q  191 aatttttgcaacaattttctctctcatactcaca 224  Q
    |||||||||||||| |||||||||||||||||||    
T  433882 aatttttgcaacaactttctctctcatactcaca 433915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 187 - 224
Target Start/End: Original strand, 18176968 - 18177005
Alignment:
Q  187 tgacaatttttgcaacaattttctctctcatactcaca 224  Q
    |||||| ||||||||||| |||||||||||||||||||    
T  18176968 tgacaacttttgcaacaactttctctctcatactcaca 18177005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 36; Significance: 0.00000000002; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 160 - 221
Target Start/End: Complemental strand, 38303755 - 38303697
Alignment:
Q  160 agataaagagaaatgatatttgaacattgacaatttttgcaacaattttctctctcatactc 221  Q
    |||||||||||||||||||||||||||   ||| |||| |||||| ||||||||||||||||    
T  38303755 agataaagagaaatgatatttgaacat---caacttttacaacaactttctctctcatactc 38303697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 187 - 224
Target Start/End: Original strand, 44294043 - 44294080
Alignment:
Q  187 tgacaatttttgcaacaattttctctctcatactcaca 224  Q
    ||||||||||||||| ||||||||||||||||||||||    
T  44294043 tgacaatttttgcaataattttctctctcatactcaca 44294080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 189 - 224
Target Start/End: Complemental strand, 20565159 - 20565124
Alignment:
Q  189 acaatttttgcaacaattttctctctcatactcaca 224  Q
    |||||||||||||||| |||||||||||||||||||    
T  20565159 acaatttttgcaacaactttctctctcatactcaca 20565124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 189 - 224
Target Start/End: Original strand, 29586023 - 29586058
Alignment:
Q  189 acaatttttgcaacaattttctctctcatactcaca 224  Q
    |||| |||||||||||||||||||||||||||||||    
T  29586023 acaacttttgcaacaattttctctctcatactcaca 29586058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 167 - 224
Target Start/End: Complemental strand, 47398511 - 47398458
Alignment:
Q  167 gagaaatgatatttgaacattgacaatttttgcaacaattttctctctcatactcaca 224  Q
    |||||||||||||||||||||  || ||||||  ||||||||||||||||||||||||    
T  47398511 gagaaatgatatttgaacatt--cattttttg--acaattttctctctcatactcaca 47398458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 189 - 223
Target Start/End: Original strand, 26837482 - 26837516
Alignment:
Q  189 acaatttttgcaacaattttctctctcatactcac 223  Q
    |||| ||||||||||||||||||||||||||||||    
T  26837482 acaacttttgcaacaattttctctctcatactcac 26837516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 187 - 224
Target Start/End: Complemental strand, 1852994 - 1852957
Alignment:
Q  187 tgacaatttttgcaacaattttctctctcatactcaca 224  Q
    |||||| ||||||||||| |||||||||||||||||||    
T  1852994 tgacaacttttgcaacaactttctctctcatactcaca 1852957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 187 - 224
Target Start/End: Original strand, 3603139 - 3603176
Alignment:
Q  187 tgacaatttttgcaacaattttctctctcatactcaca 224  Q
    |||||| ||||||||||| |||||||||||||||||||    
T  3603139 tgacaacttttgcaacaactttctctctcatactcaca 3603176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 187 - 224
Target Start/End: Complemental strand, 8411761 - 8411724
Alignment:
Q  187 tgacaatttttgcaacaattttctctctcatactcaca 224  Q
    |||||| ||||||||||| |||||||||||||||||||    
T  8411761 tgacaacttttgcaacaactttctctctcatactcaca 8411724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 187 - 224
Target Start/End: Original strand, 9008253 - 9008290
Alignment:
Q  187 tgacaatttttgcaacaattttctctctcatactcaca 224  Q
    |||||| ||||||||||| |||||||||||||||||||    
T  9008253 tgacaacttttgcaacaactttctctctcatactcaca 9008290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 187 - 224
Target Start/End: Complemental strand, 33024614 - 33024577
Alignment:
Q  187 tgacaatttttgcaacaattttctctctcatactcaca 224  Q
    |||||| ||||||||||| |||||||||||||||||||    
T  33024614 tgacaacttttgcaacaactttctctctcatactcaca 33024577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 187 - 224
Target Start/End: Complemental strand, 36577455 - 36577418
Alignment:
Q  187 tgacaatttttgcaacaattttctctctcatactcaca 224  Q
    |||||| ||||||||||| |||||||||||||||||||    
T  36577455 tgacaacttttgcaacaactttctctctcatactcaca 36577418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 34; Significance: 0.0000000003; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 187 - 224
Target Start/End: Complemental strand, 33589273 - 33589236
Alignment:
Q  187 tgacaatttttgcaacaattttctctctcatactcaca 224  Q
    |||||| |||||||||||||||||||||||||||||||    
T  33589273 tgacaacttttgcaacaattttctctctcatactcaca 33589236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 187 - 224
Target Start/End: Original strand, 34018836 - 34018873
Alignment:
Q  187 tgacaatttttgcaacaattttctctctcatactcaca 224  Q
    |||||| |||||||||||||||||||||||||||||||    
T  34018836 tgacaacttttgcaacaattttctctctcatactcaca 34018873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 163 - 224
Target Start/End: Original strand, 41520964 - 41521033
Alignment:
Q  163 taaagagaaatgatatttgaacat--------tgacaatttttgcaacaattttctctctcatactcaca 224  Q
    ||||||||||||||||||||||||        ||| || |||||||||||||||||||||||||||||||    
T  41520964 taaagagaaatgatatttgaacatccatttagtgataacttttgcaacaattttctctctcatactcaca 41521033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 187 - 224
Target Start/End: Complemental strand, 1633933 - 1633896
Alignment:
Q  187 tgacaatttttgcaacaattttctctctcatactcaca 224  Q
    |||||| ||||||||||| |||||||||||||||||||    
T  1633933 tgacaacttttgcaacaactttctctctcatactcaca 1633896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 187 - 224
Target Start/End: Original strand, 11017833 - 11017870
Alignment:
Q  187 tgacaatttttgcaacaattttctctctcatactcaca 224  Q
    |||||| ||||||||||| |||||||||||||||||||    
T  11017833 tgacaacttttgcaacaactttctctctcatactcaca 11017870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 187 - 224
Target Start/End: Complemental strand, 11658043 - 11658006
Alignment:
Q  187 tgacaatttttgcaacaattttctctctcatactcaca 224  Q
    |||||| ||||||||||| |||||||||||||||||||    
T  11658043 tgacaacttttgcaacaactttctctctcatactcaca 11658006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 187 - 224
Target Start/End: Original strand, 16966813 - 16966850
Alignment:
Q  187 tgacaatttttgcaacaattttctctctcatactcaca 224  Q
    |||||| ||||||||||| |||||||||||||||||||    
T  16966813 tgacaacttttgcaacaactttctctctcatactcaca 16966850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 187 - 224
Target Start/End: Complemental strand, 45529289 - 45529252
Alignment:
Q  187 tgacaatttttgcaacaattttctctctcatactcaca 224  Q
    |||||||||||| ||||| |||||||||||||||||||    
T  45529289 tgacaatttttgtaacaactttctctctcatactcaca 45529252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 188 - 224
Target Start/End: Complemental strand, 7956049 - 7956013
Alignment:
Q  188 gacaatttttgcaacaattttctctctcatactcaca 224  Q
    ||||| ||||||||||| |||||||||||||||||||    
T  7956049 gacaacttttgcaacaactttctctctcatactcaca 7956013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 34; Significance: 0.0000000003; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 187 - 224
Target Start/End: Complemental strand, 8267863 - 8267826
Alignment:
Q  187 tgacaatttttgcaacaattttctctctcatactcaca 224  Q
    |||||||||||||||||| |||||||||||||||||||    
T  8267863 tgacaatttttgcaacaactttctctctcatactcaca 8267826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 164 - 224
Target Start/End: Complemental strand, 8675507 - 8675439
Alignment:
Q  164 aaagagaaatgatatttgaacat--------tgacaatttttgcaacaattttctctctcatactcaca 224  Q
    |||||||||||||||||||||||        ||| || |||||||||||||||||||||||||||||||    
T  8675507 aaagagaaatgatatttgaacatccattttgtgataacttttgcaacaattttctctctcatactcaca 8675439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 168 - 218
Target Start/End: Complemental strand, 2689047 - 2688998
Alignment:
Q  168 agaaatgatatttgaacattgacaatttttgcaacaattttctctctcata 218  Q
    ||||||||||||||||||| ||||| ||||||||||| ||||||| |||||    
T  2689047 agaaatgatatttgaacat-gacaacttttgcaacaactttctctttcata 2688998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 165 - 224
Target Start/End: Original strand, 5042246 - 5042313
Alignment:
Q  165 aagagaaatgatatttgaacat--------tgacaatttttgcaacaattttctctctcatactcaca 224  Q
    ||||||||||||||||||||||        |||||||||||||||||| ||| |||||||||||||||    
T  5042246 aagagaaatgatatttgaacatccatttagtgacaatttttgcaacaactttatctctcatactcaca 5042313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 165 - 224
Target Start/End: Complemental strand, 23126416 - 23126349
Alignment:
Q  165 aagagaaatgatatttgaacat--------tgacaatttttgcaacaattttctctctcatactcaca 224  Q
    ||||||||||||||||||||||        |||||| |||||||||||||||||||| ||||||||||    
T  23126416 aagagaaatgatatttgaacatccatttagtgacaacttttgcaacaattttctctcccatactcaca 23126349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 187 - 220
Target Start/End: Complemental strand, 5821655 - 5821622
Alignment:
Q  187 tgacaatttttgcaacaattttctctctcatact 220  Q
    |||||||||||||||||||||| |||||||||||    
T  5821655 tgacaatttttgcaacaattttttctctcatact 5821622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 187 - 224
Target Start/End: Complemental strand, 21064269 - 21064232
Alignment:
Q  187 tgacaatttttgcaacaattttctctctcatactcaca 224  Q
    |||||| ||||||||||| |||||||||||||||||||    
T  21064269 tgacaacttttgcaacaactttctctctcatactcaca 21064232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 187 - 224
Target Start/End: Complemental strand, 35099048 - 35099011
Alignment:
Q  187 tgacaatttttgcaacaattttctctctcatactcaca 224  Q
    |||||| ||||||||||| |||||||||||||||||||    
T  35099048 tgacaacttttgcaacaactttctctctcatactcaca 35099011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 188 - 224
Target Start/End: Complemental strand, 16437607 - 16437571
Alignment:
Q  188 gacaatttttgcaacaattttctctctcatactcaca 224  Q
    ||||| ||||||||||| |||||||||||||||||||    
T  16437607 gacaacttttgcaacaactttctctctcatactcaca 16437571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0321 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0321
Description:

Target: scaffold0321; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 187 - 224
Target Start/End: Original strand, 19664 - 19701
Alignment:
Q  187 tgacaatttttgcaacaattttctctctcatactcaca 224  Q
    |||||| ||||||||||| |||||||||||||||||||    
T  19664 tgacaacttttgcaacaactttctctctcatactcaca 19701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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