View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17179_high_4 (Length: 554)

Name: NF17179_high_4
Description: NF17179
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17179_high_4
NF17179_high_4
[»] chr1 (6 HSPs)
chr1 (15-435)||(35034318-35034745)
chr1 (404-435)||(34748049-34748080)
chr1 (399-435)||(24987606-24987642)
chr1 (399-435)||(26095812-26095848)
chr1 (387-435)||(28410900-28410948)
chr1 (399-435)||(32131926-32131962)
[»] chr2 (7 HSPs)
chr2 (399-435)||(30371383-30371419)
chr2 (400-435)||(23260319-23260354)
chr2 (397-435)||(28484615-28484653)
chr2 (398-435)||(34635703-34635740)
chr2 (398-434)||(16577371-16577407)
chr2 (399-435)||(19493471-19493507)
chr2 (399-435)||(22116153-22116189)
[»] scaffold0384 (1 HSPs)
scaffold0384 (400-435)||(4248-4283)
[»] chr8 (5 HSPs)
chr8 (401-435)||(9513828-9513862)
chr8 (397-435)||(39515145-39515183)
chr8 (397-434)||(12330329-12330366)
chr8 (392-433)||(26170420-26170461)
chr8 (398-435)||(34985345-34985382)
[»] chr7 (1 HSPs)
chr7 (401-435)||(5766638-5766672)
[»] chr4 (3 HSPs)
chr4 (401-435)||(51965372-51965406)
chr4 (399-435)||(11563540-11563576)
chr4 (399-435)||(37273418-37273454)
[»] scaffold0769 (1 HSPs)
scaffold0769 (398-435)||(4174-4211)
[»] chr5 (4 HSPs)
chr5 (398-435)||(20698543-20698580)
chr5 (398-435)||(22551519-22551556)
chr5 (398-435)||(37205003-37205040)
chr5 (399-435)||(10976770-10976806)
[»] chr3 (4 HSPs)
chr3 (398-435)||(49872972-49873009)
chr3 (401-434)||(51252049-51252082)
chr3 (399-435)||(6510213-6510249)
chr3 (399-431)||(9322117-9322149)
[»] chr6 (1 HSPs)
chr6 (395-435)||(13114392-13114432)


Alignment Details
Target: chr1 (Bit Score: 325; Significance: 0; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 15 - 435
Target Start/End: Complemental strand, 35034745 - 35034318
Alignment:
Q  15 cataggcaatgcagatggtggtgatggtggtggcggcatgctgacatttctacgcactccagctgcattagtatttctcgagtatgttggtc---ttttc 111  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||   |||||    
T  35034745 cataggcaatgcagatggtggtgatggtggtggcggcatgctggcatttctacgcactccagctgcattagtatttctcgagtatgttggtcgacttttc 35034646  T
Q  112 ttatcaacgacaggtccatgtgtatgttttccatcatatgtaacaagtacatattttggatctttagcatccctttccacttgttttttaatgttacaat 211  Q
    ||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35034645 ttatcaatgacaggtccatgggtatgttttccatcatatgtaacaagtacatattttggatctttagcatccctttccacttgttttttaatgttacaat 35034546  T
Q  212 tgtgtgttgaacatttgtaataccccctacaattcacacaatattaaataattaggaatcaaaacatattcatatatatgattcatgatacaatgatact 311  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  35034545 tgtgtgttgaacatttgtagtaccccctacaattcacacaatattaaataattaggaatcaaaacatattcatatatatgatgcatgatacaatgatact 35034446  T
Q  312 aaaaccttttatgtaaatggacaacttttagataatgataagaaactttgtagctatttaaaacacacgcgc------atgcataattacaattagggtt 405  Q
    ||||||||| ||||||||||||||  |||||||||||||||||||||||||||||||| ||||||||| |||      ||||||||||| |||| |||||    
T  35034445 aaaaccttt-atgtaaatggacaatgtttagataatgataagaaactttgtagctattcaaaacacacacgcgcacacatgcataattaaaatt-gggtt 35034348  T
Q  406 aatatgtctttactccctgtaatataggtc 435  Q
    |||| |||||||  ||||||||||||||||    
T  35034347 aataggtctttatcccctgtaatataggtc 35034318  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 404 - 435
Target Start/End: Original strand, 34748049 - 34748080
Alignment:
Q  404 ttaatatgtctttactccctgtaatataggtc 435  Q
    ||||||||||||||||||||||||||||||||    
T  34748049 ttaatatgtctttactccctgtaatataggtc 34748080  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 399 - 435
Target Start/End: Original strand, 24987606 - 24987642
Alignment:
Q  399 tagggttaatatgtctttactccctgtaatataggtc 435  Q
    ||||||||||| |||||||| ||||||||||||||||    
T  24987606 tagggttaataggtctttaccccctgtaatataggtc 24987642  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 399 - 435
Target Start/End: Original strand, 26095812 - 26095848
Alignment:
Q  399 tagggttaatatgtctttactccctgtaatataggtc 435  Q
    ||||||||||| |||||||| ||||||||||||||||    
T  26095812 tagggttaataggtctttaccccctgtaatataggtc 26095848  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 387 - 435
Target Start/End: Original strand, 28410900 - 28410948
Alignment:
Q  387 cataattacaattagggttaatatgtctttactccctgtaatataggtc 435  Q
    |||||| | |||||||||||||| |||||||  ||||||||||||||||    
T  28410900 cataataataattagggttaataggtctttatcccctgtaatataggtc 28410948  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 399 - 435
Target Start/End: Complemental strand, 32131962 - 32131926
Alignment:
Q  399 tagggttaatatgtctttactccctgtaatataggtc 435  Q
    ||||||||||| |||||||| ||||||||||||||||    
T  32131962 tagggttaataggtctttaccccctgtaatataggtc 32131926  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000003; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 399 - 435
Target Start/End: Original strand, 30371383 - 30371419
Alignment:
Q  399 tagggttaatatgtctttactccctgtaatataggtc 435  Q
    ||||||||||| |||||||||||||||||||||||||    
T  30371383 tagggttaataggtctttactccctgtaatataggtc 30371419  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 400 - 435
Target Start/End: Original strand, 23260319 - 23260354
Alignment:
Q  400 agggttaatatgtctttactccctgtaatataggtc 435  Q
    |||||||||| |||||||||||||||||||||||||    
T  23260319 agggttaataggtctttactccctgtaatataggtc 23260354  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 397 - 435
Target Start/End: Complemental strand, 28484653 - 28484615
Alignment:
Q  397 attagggttaatatgtctttactccctgtaatataggtc 435  Q
    |||||| |||||| |||||||||||||||||||||||||    
T  28484653 attaggattaataggtctttactccctgtaatataggtc 28484615  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 398 - 435
Target Start/End: Original strand, 34635703 - 34635740
Alignment:
Q  398 ttagggttaatatgtctttactccctgtaatataggtc 435  Q
    |||||||||||| |||||||| ||||||||||||||||    
T  34635703 ttagggttaataggtctttaccccctgtaatataggtc 34635740  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 398 - 434
Target Start/End: Complemental strand, 16577407 - 16577371
Alignment:
Q  398 ttagggttaatatgtctttactccctgtaatataggt 434  Q
    |||||||||||| |||||||| |||||||||||||||    
T  16577407 ttagggttaataggtctttaccccctgtaatataggt 16577371  T

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Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 399 - 435
Target Start/End: Complemental strand, 19493507 - 19493471
Alignment:
Q  399 tagggttaatatgtctttactccctgtaatataggtc 435  Q
    ||||||||||| |||||||| ||||||||||||||||    
T  19493507 tagggttaataggtctttaccccctgtaatataggtc 19493471  T

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Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 399 - 435
Target Start/End: Original strand, 22116153 - 22116189
Alignment:
Q  399 tagggttaatatgtctttactccctgtaatataggtc 435  Q
    ||||||||||| |||||||| ||||||||||||||||    
T  22116153 tagggttaataggtctttaccccctgtaatataggtc 22116189  T

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Target: scaffold0384 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0384
Description:

Target: scaffold0384; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 400 - 435
Target Start/End: Original strand, 4248 - 4283
Alignment:
Q  400 agggttaatatgtctttactccctgtaatataggtc 435  Q
    |||||||||| |||||||||||||||||||||||||    
T  4248 agggttaataggtctttactccctgtaatataggtc 4283  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000005; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 401 - 435
Target Start/End: Original strand, 9513828 - 9513862
Alignment:
Q  401 gggttaatatgtctttactccctgtaatataggtc 435  Q
    |||||||||||||||||| ||||||||||||||||    
T  9513828 gggttaatatgtctttaccccctgtaatataggtc 9513862  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 397 - 435
Target Start/End: Complemental strand, 39515183 - 39515145
Alignment:
Q  397 attagggttaatatgtctttactccctgtaatataggtc 435  Q
    ||||||||||||| | |||||||||||||||||||||||    
T  39515183 attagggttaataggcctttactccctgtaatataggtc 39515145  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 397 - 434
Target Start/End: Original strand, 12330329 - 12330366
Alignment:
Q  397 attagggttaatatgtctttactccctgtaatataggt 434  Q
    ||||||||||||| |||||||| |||||||||||||||    
T  12330329 attagggttaataggtctttaccccctgtaatataggt 12330366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 392 - 433
Target Start/End: Complemental strand, 26170461 - 26170420
Alignment:
Q  392 ttacaattagggttaatatgtctttactccctgtaatatagg 433  Q
    ||||| ||||||||||||||||||||| ||||||||| ||||    
T  26170461 ttacatttagggttaatatgtctttaccccctgtaatttagg 26170420  T

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Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 398 - 435
Target Start/End: Complemental strand, 34985382 - 34985345
Alignment:
Q  398 ttagggttaatatgtctttactccctgtaatataggtc 435  Q
    |||||||||||| |||||||| ||||||||||||||||    
T  34985382 ttagggttaataggtctttaccccctgtaatataggtc 34985345  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 401 - 435
Target Start/End: Original strand, 5766638 - 5766672
Alignment:
Q  401 gggttaatatgtctttactccctgtaatataggtc 435  Q
    |||||||||||||||||| ||||||||||||||||    
T  5766638 gggttaatatgtctttaccccctgtaatataggtc 5766672  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000005; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 401 - 435
Target Start/End: Original strand, 51965372 - 51965406
Alignment:
Q  401 gggttaatatgtctttactccctgtaatataggtc 435  Q
    ||||||||| |||||||||||||||||||||||||    
T  51965372 gggttaataggtctttactccctgtaatataggtc 51965406  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 399 - 435
Target Start/End: Complemental strand, 11563576 - 11563540
Alignment:
Q  399 tagggttaatatgtctttactccctgtaatataggtc 435  Q
    ||||||||||| |||||||| ||||||||||||||||    
T  11563576 tagggttaataggtctttaccccctgtaatataggtc 11563540  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 399 - 435
Target Start/End: Complemental strand, 37273454 - 37273418
Alignment:
Q  399 tagggttaatatgtctttactccctgtaatataggtc 435  Q
    ||||||||||| |||||||| ||||||||||||||||    
T  37273454 tagggttaataggtctttaccccctgtaatataggtc 37273418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0769 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0769
Description:

Target: scaffold0769; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 398 - 435
Target Start/End: Complemental strand, 4211 - 4174
Alignment:
Q  398 ttagggttaatatgtctttactccctgtaatataggtc 435  Q
    |||||||||||| |||||||| ||||||||||||||||    
T  4211 ttagggttaataggtctttaccccctgtaatataggtc 4174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 398 - 435
Target Start/End: Complemental strand, 20698580 - 20698543
Alignment:
Q  398 ttagggttaatatgtctttactccctgtaatataggtc 435  Q
    |||||||||||| ||||||||| |||||||||||||||    
T  20698580 ttagggttaataggtctttacttcctgtaatataggtc 20698543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 398 - 435
Target Start/End: Original strand, 22551519 - 22551556
Alignment:
Q  398 ttagggttaatatgtctttactccctgtaatataggtc 435  Q
    |||||||||||| |||||||| ||||||||||||||||    
T  22551519 ttagggttaataggtctttaccccctgtaatataggtc 22551556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 398 - 435
Target Start/End: Complemental strand, 37205040 - 37205003
Alignment:
Q  398 ttagggttaatatgtctttactccctgtaatataggtc 435  Q
    ||||||||||||||||||||| | ||||||||||||||    
T  37205040 ttagggttaatatgtctttaccctctgtaatataggtc 37205003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 399 - 435
Target Start/End: Complemental strand, 10976806 - 10976770
Alignment:
Q  399 tagggttaatatgtctttactccctgtaatataggtc 435  Q
    ||||||||||| |||||||| ||||||||||||||||    
T  10976806 tagggttaataggtctttaccccctgtaatataggtc 10976770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 398 - 435
Target Start/End: Complemental strand, 49873009 - 49872972
Alignment:
Q  398 ttagggttaatatgtctttactccctgtaatataggtc 435  Q
    |||||||||||| |||||||| ||||||||||||||||    
T  49873009 ttagggttaataggtctttaccccctgtaatataggtc 49872972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 401 - 434
Target Start/End: Original strand, 51252049 - 51252082
Alignment:
Q  401 gggttaatatgtctttactccctgtaatataggt 434  Q
    ||||||||| ||||||||||||||||||||||||    
T  51252049 gggttaataggtctttactccctgtaatataggt 51252082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 399 - 435
Target Start/End: Original strand, 6510213 - 6510249
Alignment:
Q  399 tagggttaatatgtctttactccctgtaatataggtc 435  Q
    ||||||||||| |||||||| ||||||||||||||||    
T  6510213 tagggttaataggtctttaccccctgtaatataggtc 6510249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 399 - 431
Target Start/End: Original strand, 9322117 - 9322149
Alignment:
Q  399 tagggttaatatgtctttactccctgtaatata 431  Q
    ||||||||||| |||||||||||||||||||||    
T  9322117 tagggttaataggtctttactccctgtaatata 9322149  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 395 - 435
Target Start/End: Original strand, 13114392 - 13114432
Alignment:
Q  395 caattagggttaatatgtctttactccctgtaatataggtc 435  Q
    ||||| ||||||||| |||||||| ||||||||||||||||    
T  13114392 caatttgggttaataggtctttaccccctgtaatataggtc 13114432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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