View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17179_high_6 (Length: 534)
Name: NF17179_high_6
Description: NF17179
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17179_high_6 |
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Alignment Details
Target: chr5 (Bit Score: 203; Significance: 1e-110; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 203; E-Value: 1e-110
Query Start/End: Original strand, 308 - 522
Target Start/End: Complemental strand, 27549140 - 27548926
Alignment:
| Q |
308 |
accaatacacaagacatagacacatgtacaaagatttacaaatgaaaagttatattgtttgttagttgagatgggtcggagttagctctttatttctaga |
407 |
Q |
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| T |
27549140 |
accaatacacaagacgtagacacatgtacaaagatttacaaatgaaaagttatattgtttgttagttgagatgggtcggatttagctctttatttctaga |
27549041 |
T |
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| Q |
408 |
ggaacaaattgttggaatgctcgttatttcttcaatcatttttaaaatttgtattttagactaacactatctcataaactagattaagagaagctagttt |
507 |
Q |
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| T |
27549040 |
ggaacaaattgttggaatgctcgttatttcttcaatcatttttaaaatttgtattttagactaacactatctcataaactagattaagagaagctacttt |
27548941 |
T |
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| Q |
508 |
ataacatgatagctg |
522 |
Q |
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| T |
27548940 |
ataacatgatagctg |
27548926 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 175; E-Value: 6e-94
Query Start/End: Original strand, 19 - 208
Target Start/End: Complemental strand, 27549391 - 27549202
Alignment:
| Q |
19 |
gaaaaggatagaaggaaaggaatattttttattattattgaaataattaaatgatgtttatttttgtgtggttgggatcacacaaaaattattttcaatt |
118 |
Q |
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| T |
27549391 |
gaaaaggatagaaggaaaggaatattttttattattattgaaataattaaatgatgtttatttttgtgtggttgggatcacacaaaaattattttcaatt |
27549292 |
T |
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| Q |
119 |
tgttcaacccaaagtgaccccatacctgcc-tatatataccactttactttttaaatgataagtttggtcttccgtcttcgctacaatgaa |
208 |
Q |
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| T |
27549291 |
tgttcaacccaaagtgaccccatacctgccttatatataccactttacttttt-aatgataagtttggtcttccgtcttcgctacaatgaa |
27549202 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 204 - 240
Target Start/End: Complemental strand, 27549189 - 27549153
Alignment:
| Q |
204 |
atgaacaattttttatgacattcttgaaaagatatac |
240 |
Q |
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| T |
27549189 |
atgaacaattttttatgacattcttgaaaagatatac |
27549153 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 42 - 70
Target Start/End: Original strand, 41542225 - 41542253
Alignment:
| Q |
42 |
attttttattattattgaaataattaaat |
70 |
Q |
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| T |
41542225 |
attttttattattattgaaataattaaat |
41542253 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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