View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17179_low_1 (Length: 599)

Name: NF17179_low_1
Description: NF17179
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17179_low_1
NF17179_low_1
[»] chr6 (6 HSPs)
chr6 (12-581)||(2386227-2386795)
chr6 (186-234)||(24333044-24333092)
chr6 (192-233)||(3525236-3525277)
chr6 (190-231)||(4308887-4308928)
chr6 (194-231)||(31776191-31776228)
chr6 (200-232)||(30536883-30536915)
[»] chr2 (7 HSPs)
chr2 (190-232)||(37276854-37276896)
chr2 (190-231)||(37419586-37419627)
chr2 (190-232)||(1830149-1830191)
chr2 (186-232)||(15370241-15370287)
chr2 (193-230)||(40059381-40059418)
chr2 (193-230)||(40085281-40085318)
chr2 (193-229)||(43985322-43985358)
[»] chr4 (11 HSPs)
chr4 (200-233)||(28615454-28615487)
chr4 (190-233)||(679401-679444)
chr4 (186-233)||(41433481-41433528)
chr4 (188-231)||(53034718-53034761)
chr4 (190-232)||(22662169-22662211)
chr4 (190-232)||(22666648-22666690)
chr4 (192-233)||(27043747-27043788)
chr4 (198-231)||(52428782-52428815)
chr4 (201-233)||(7367971-7368003)
chr4 (192-232)||(25571371-25571411)
chr4 (183-231)||(54575522-54575570)
[»] chr3 (5 HSPs)
chr3 (192-233)||(25447162-25447203)
chr3 (192-233)||(36507009-36507050)
chr3 (191-233)||(47903997-47904039)
chr3 (192-229)||(26911703-26911740)
chr3 (192-228)||(33405114-33405150)
[»] chr8 (3 HSPs)
chr8 (186-229)||(39551130-39551173)
chr8 (200-233)||(10727464-10727497)
chr8 (192-232)||(38602439-38602479)
[»] chr7 (5 HSPs)
chr7 (186-233)||(28691753-28691800)
chr7 (186-233)||(41040271-41040318)
chr7 (192-229)||(9210933-9210970)
chr7 (192-233)||(37064385-37064426)
chr7 (192-232)||(44822070-44822110)
[»] chr5 (6 HSPs)
chr5 (182-229)||(18286893-18286940)
chr5 (190-232)||(3280654-3280696)
chr5 (192-233)||(32197845-32197886)
chr5 (201-233)||(10638452-10638484)
chr5 (200-232)||(32010065-32010097)
chr5 (200-232)||(40335791-40335823)
[»] chr1 (4 HSPs)
chr1 (186-225)||(4200340-4200379)
chr1 (182-232)||(37241739-37241788)
chr1 (190-231)||(6292602-6292643)
chr1 (200-233)||(30013996-30014029)


Alignment Details
Target: chr6 (Bit Score: 530; Significance: 0; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 530; E-Value: 0
Query Start/End: Original strand, 12 - 581
Target Start/End: Complemental strand, 2386795 - 2386227
Alignment:
Q  12 atggacatcatccacgacacagacactgacacaacgacaatgctactaatttgagaaacacacaattcatataagatgttatcataagctagtccttgag 111  Q
    ||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2386795 atggacatcagacacgacacagacactgacacaacgacaatgctactaatttgagaaacacacaattcatataagatgttatcataagctagtccttgag 2386696  T
Q  112 ggcttatgaaagtaagctgaaaactacacatggatattttttaagctgtttctgtatattctcaaaaaggctcgcaaatgcttatatcagtagataaact 211  Q
    |||||||||||||||||||||||||||  ||||| |||||||||||||||||||||||||||||||||||||||||||||||  | || |||||||||||    
T  2386695 ggcttatgaaagtaagctgaaaactacgaatggacattttttaagctgtttctgtatattctcaaaaaggctcgcaaatgctgtt-tctgtagataaact 2386597  T
Q  212 taaataagtcaatccaaacagaaagttactgttaatttgaatattcaactttttcttcactagttattgacattttttcttgtgttttcttcctataggg 311  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2386596 taaataagtcaatccaaacagaaagttactgttaatttgaatattcaactttttcttcactagttattgacattttttcttgtgttttcttcctataggg 2386497  T
Q  312 acttgcagcattgacaacaacagccctagcaagatcatggcatcacaaaaacagatcaatgtcatcttcatttctttcattatctctctatttaatctca 411  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2386496 acttgcagcattgacaacaacagccctagcaagatcatggcatcacaaaaacagatcaatgtcatcttcatttctttcattatctctctatttaatctca 2386397  T
Q  412 ttaggccaaggtggatataatccatctctacaagcctttggagctgatcaacttggtgaagatgaagaactaccttgtagtaacacagatgatacaagta 511  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2386396 ttaggccaaggtggatataatccatctctacaagcctttggagctgatcaacttggtgaagatgaagaactaccttgtagtaacacagatgatacaagta 2386297  T
Q  512 gcaacaaaaaagcacttttctttcaatggtggtattttggtgtttgtgctggaagcctaatgggtgtaac 581  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2386296 gcaacaaaaaagcacttttctttcaatggtggtattttggtgtttgtgctggaagcctaatgggtgtaac 2386227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 186 - 234
Target Start/End: Original strand, 24333044 - 24333092
Alignment:
Q  186 caaatgcttatatcagtagataaacttaaataagtcaatccaaacagaa 234  Q
    ||||||||||| |||||| ||||||| ||||| ||||||||||||||||    
T  24333044 caaatgcttatgtcagtacataaactgaaatatgtcaatccaaacagaa 24333092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 192 - 233
Target Start/End: Original strand, 3525236 - 3525277
Alignment:
Q  192 cttatatcagtagataaacttaaataagtcaatccaaacaga 233  Q
    ||||| ||| ||||||||||||||| ||||||||||||||||    
T  3525236 cttatgtcactagataaacttaaattagtcaatccaaacaga 3525277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 190 - 231
Target Start/End: Original strand, 4308887 - 4308928
Alignment:
Q  190 tgcttatatcagtagataaacttaaataagtcaatccaaaca 231  Q
    ||||||| |||||||||||||| ||||||| |||||||||||    
T  4308887 tgcttatgtcagtagataaactcaaataagccaatccaaaca 4308928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 194 - 231
Target Start/End: Complemental strand, 31776228 - 31776191
Alignment:
Q  194 tatatcagtagataaacttaaataagtcaatccaaaca 231  Q
    ||||||||||||||| || |||||||||||||||||||    
T  31776228 tatatcagtagataagctcaaataagtcaatccaaaca 31776191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 200 - 232
Target Start/End: Complemental strand, 30536915 - 30536883
Alignment:
Q  200 agtagataaacttaaataagtcaatccaaacag 232  Q
    |||||||||||| ||||||||||||||||||||    
T  30536915 agtagataaactcaaataagtcaatccaaacag 30536883  T

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Target: chr2 (Bit Score: 35; Significance: 0.0000000002; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 190 - 232
Target Start/End: Original strand, 37276854 - 37276896
Alignment:
Q  190 tgcttatatcagtagataaacttaaataagtcaatccaaacag 232  Q
    ||||||||| |||||||||||||||||||||| ||||||||||    
T  37276854 tgcttatattagtagataaacttaaataagtcgatccaaacag 37276896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 190 - 231
Target Start/End: Complemental strand, 37419627 - 37419586
Alignment:
Q  190 tgcttatatcagtagataaacttaaataagtcaatccaaaca 231  Q
    ||||||||| |||||||||||| |||||||||||||||||||    
T  37419627 tgcttatataagtagataaactcaaataagtcaatccaaaca 37419586  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 190 - 232
Target Start/End: Original strand, 1830149 - 1830191
Alignment:
Q  190 tgcttatatcagtagataaacttaaataagtcaatccaaacag 232  Q
    ||||||| |||||| ||||||| ||||||||||||||||||||    
T  1830149 tgcttatgtcagtaaataaactcaaataagtcaatccaaacag 1830191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 186 - 232
Target Start/End: Complemental strand, 15370287 - 15370241
Alignment:
Q  186 caaatgcttatatcagtagataaacttaaataagtcaatccaaacag 232  Q
    |||||||||||  |||||||||| || ||||||||||||||||||||    
T  15370287 caaatgcttatgccagtagataagctcaaataagtcaatccaaacag 15370241  T

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Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 193 - 230
Target Start/End: Complemental strand, 40059418 - 40059381
Alignment:
Q  193 ttatatcagtagataaacttaaataagtcaatccaaac 230  Q
    |||| |||||||||||||| ||||||||||||||||||    
T  40059418 ttatgtcagtagataaactcaaataagtcaatccaaac 40059381  T

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Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 193 - 230
Target Start/End: Complemental strand, 40085318 - 40085281
Alignment:
Q  193 ttatatcagtagataaacttaaataagtcaatccaaac 230  Q
    |||| |||||||||||||| ||||||||||||||||||    
T  40085318 ttatgtcagtagataaactcaaataagtcaatccaaac 40085281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 193 - 229
Target Start/End: Original strand, 43985322 - 43985358
Alignment:
Q  193 ttatatcagtagataaacttaaataagtcaatccaaa 229  Q
    |||| |||||||||||||||||||||||| |||||||    
T  43985322 ttatgtcagtagataaacttaaataagtcgatccaaa 43985358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 34; Significance: 0.0000000009; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 200 - 233
Target Start/End: Original strand, 28615454 - 28615487
Alignment:
Q  200 agtagataaacttaaataagtcaatccaaacaga 233  Q
    ||||||||||||||||||||||||||||||||||    
T  28615454 agtagataaacttaaataagtcaatccaaacaga 28615487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 190 - 233
Target Start/End: Original strand, 679401 - 679444
Alignment:
Q  190 tgcttatatcagtagataaacttaaataagtcaatccaaacaga 233  Q
    |||||||| ||||||||||||| |||||||||||| ||||||||    
T  679401 tgcttataccagtagataaactcaaataagtcaattcaaacaga 679444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 186 - 233
Target Start/End: Original strand, 41433481 - 41433528
Alignment:
Q  186 caaatgcttatatcagtagataaacttaaataagtcaatccaaacaga 233  Q
    ||||||||||| |||| ||||||||| |||||||||||| ||||||||    
T  41433481 caaatgcttatgtcaggagataaactcaaataagtcaattcaaacaga 41433528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 188 - 231
Target Start/End: Complemental strand, 53034761 - 53034718
Alignment:
Q  188 aatgcttatatcagtagataaacttaaataagtcaatccaaaca 231  Q
    ||||||||||||||||||||| || ||||||||||| |||||||    
T  53034761 aatgcttatatcagtagataagctcaaataagtcaaaccaaaca 53034718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 190 - 232
Target Start/End: Complemental strand, 22662211 - 22662169
Alignment:
Q  190 tgcttatatcagtagataaacttaaataagtcaatccaaacag 232  Q
    ||||||| | |||||||||||| ||||||||||||||||||||    
T  22662211 tgcttatgttagtagataaactcaaataagtcaatccaaacag 22662169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 190 - 232
Target Start/End: Complemental strand, 22666690 - 22666648
Alignment:
Q  190 tgcttatatcagtagataaacttaaataagtcaatccaaacag 232  Q
    ||||||| | |||||||||||| ||||||||||||||||||||    
T  22666690 tgcttatgttagtagataaactcaaataagtcaatccaaacag 22666648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 192 - 233
Target Start/End: Complemental strand, 27043788 - 27043747
Alignment:
Q  192 cttatatcagtagataaacttaaataagtcaatccaaacaga 233  Q
    ||||| ||||||||||| || |||||||||||||||||||||    
T  27043788 cttatgtcagtagataagctcaaataagtcaatccaaacaga 27043747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 198 - 231
Target Start/End: Original strand, 52428782 - 52428815
Alignment:
Q  198 tcagtagataaacttaaataagtcaatccaaaca 231  Q
    |||||||||||||| |||||||||||||||||||    
T  52428782 tcagtagataaactcaaataagtcaatccaaaca 52428815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 201 - 233
Target Start/End: Complemental strand, 7368003 - 7367971
Alignment:
Q  201 gtagataaacttaaataagtcaatccaaacaga 233  Q
    ||||||||||| |||||||||||||||||||||    
T  7368003 gtagataaactcaaataagtcaatccaaacaga 7367971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 192 - 232
Target Start/End: Original strand, 25571371 - 25571411
Alignment:
Q  192 cttatatcagtagataaacttaaataagtcaatccaaacag 232  Q
    ||||| |||||||||||||| ||||||| ||||||||||||    
T  25571371 cttatgtcagtagataaactcaaataagccaatccaaacag 25571411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 183 - 231
Target Start/End: Complemental strand, 54575570 - 54575522
Alignment:
Q  183 tcgcaaatgcttatatcagtagataaacttaaataagtcaatccaaaca 231  Q
    |||||||||||||| ||  || ||||||| |||||||||||||||||||    
T  54575570 tcgcaaatgcttatgtctataaataaactcaaataagtcaatccaaaca 54575522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 34; Significance: 0.0000000009; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 192 - 233
Target Start/End: Complemental strand, 25447203 - 25447162
Alignment:
Q  192 cttatatcagtagataaacttaaataagtcaatccaaacaga 233  Q
    ||||| |||||||||||||| |||||||||||||||||||||    
T  25447203 cttatgtcagtagataaactcaaataagtcaatccaaacaga 25447162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 192 - 233
Target Start/End: Complemental strand, 36507050 - 36507009
Alignment:
Q  192 cttatatcagtagataaacttaaataagtcaatccaaacaga 233  Q
    |||||||||||||||||||| ||||||| |||||||||||||    
T  36507050 cttatatcagtagataaactcaaataagccaatccaaacaga 36507009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 191 - 233
Target Start/End: Complemental strand, 47904039 - 47903997
Alignment:
Q  191 gcttatatcagtagataaacttaaataagtcaatccaaacaga 233  Q
    |||||||||||  |||||||| |||||||||||||||||||||    
T  47904039 gcttatatcagaggataaactcaaataagtcaatccaaacaga 47903997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 192 - 229
Target Start/End: Original strand, 26911703 - 26911740
Alignment:
Q  192 cttatatcagtagataaacttaaataagtcaatccaaa 229  Q
    ||||| |||||||||||||| |||||||||||||||||    
T  26911703 cttatgtcagtagataaactcaaataagtcaatccaaa 26911740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 192 - 228
Target Start/End: Complemental strand, 33405150 - 33405114
Alignment:
Q  192 cttatatcagtagataaacttaaataagtcaatccaa 228  Q
    ||||| |||||||||||||| ||||||||||||||||    
T  33405150 cttatgtcagtagataaactcaaataagtcaatccaa 33405114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 186 - 229
Target Start/End: Complemental strand, 39551173 - 39551130
Alignment:
Q  186 caaatgcttatatcagtagataaacttaaataagtcaatccaaa 229  Q
    |||||||||||||| |||||||| || |||||||||||||||||    
T  39551173 caaatgcttatatccgtagataatctcaaataagtcaatccaaa 39551130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 200 - 233
Target Start/End: Original strand, 10727464 - 10727497
Alignment:
Q  200 agtagataaacttaaataagtcaatccaaacaga 233  Q
    |||||||||||| |||||||||||||||||||||    
T  10727464 agtagataaactcaaataagtcaatccaaacaga 10727497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 192 - 232
Target Start/End: Original strand, 38602439 - 38602479
Alignment:
Q  192 cttatatcagtagataaacttaaataagtcaatccaaacag 232  Q
    ||||| ||||||||||| || ||||||||||||||||||||    
T  38602439 cttatgtcagtagataagctcaaataagtcaatccaaacag 38602479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 186 - 233
Target Start/End: Complemental strand, 28691800 - 28691753
Alignment:
Q  186 caaatgcttatatcagtagataaacttaaataagtcaatccaaacaga 233  Q
    ||||||||||| | || ||||||||| |||||||||||||||||||||    
T  28691800 caaatgcttatgttagcagataaactcaaataagtcaatccaaacaga 28691753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 186 - 233
Target Start/End: Original strand, 41040271 - 41040318
Alignment:
Q  186 caaatgcttatatcagtagataaacttaaataagtcaatccaaacaga 233  Q
    ||||| |||||||||||||||||||| |||||| ||||| ||||||||    
T  41040271 caaatacttatatcagtagataaactcaaataaatcaattcaaacaga 41040318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 192 - 229
Target Start/End: Original strand, 9210933 - 9210970
Alignment:
Q  192 cttatatcagtagataaacttaaataagtcaatccaaa 229  Q
    ||||||||||||||||| || |||||||||||||||||    
T  9210933 cttatatcagtagataagctcaaataagtcaatccaaa 9210970  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 192 - 233
Target Start/End: Complemental strand, 37064426 - 37064385
Alignment:
Q  192 cttatatcagtagataaacttaaataagtcaatccaaacaga 233  Q
    |||||||||||||||||  | |||||||||||||||||||||    
T  37064426 cttatatcagtagataagatcaaataagtcaatccaaacaga 37064385  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 192 - 232
Target Start/End: Original strand, 44822070 - 44822110
Alignment:
Q  192 cttatatcagtagataaacttaaataagtcaatccaaacag 232  Q
    ||||| |||| ||||||||| ||||||||||||||||||||    
T  44822070 cttatgtcagcagataaactcaaataagtcaatccaaacag 44822110  T

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Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 182 - 229
Target Start/End: Original strand, 18286893 - 18286940
Alignment:
Q  182 ctcgcaaatgcttatatcagtagataaacttaaataagtcaatccaaa 229  Q
    ||||||||||||||||| ||||||||||||  ||||| ||||||||||    
T  18286893 ctcgcaaatgcttatattagtagataaactcgaataattcaatccaaa 18286940  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 190 - 232
Target Start/End: Complemental strand, 3280696 - 3280654
Alignment:
Q  190 tgcttatatcagtagataaacttaaataagtcaatccaaacag 232  Q
    |||||| ||||||||||||  ||||||||||||||||||||||    
T  3280696 tgcttaaatcagtagataagtttaaataagtcaatccaaacag 3280654  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 192 - 233
Target Start/End: Original strand, 32197845 - 32197886
Alignment:
Q  192 cttatatcagtagataaacttaaataagtcaatccaaacaga 233  Q
    ||||| |||||||||||||| ||| |||||||||||||||||    
T  32197845 cttatgtcagtagataaactcaaaaaagtcaatccaaacaga 32197886  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 201 - 233
Target Start/End: Complemental strand, 10638484 - 10638452
Alignment:
Q  201 gtagataaacttaaataagtcaatccaaacaga 233  Q
    |||||||| ||||||||||||||||||||||||    
T  10638484 gtagataatcttaaataagtcaatccaaacaga 10638452  T

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Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 200 - 232
Target Start/End: Original strand, 32010065 - 32010097
Alignment:
Q  200 agtagataaacttaaataagtcaatccaaacag 232  Q
    |||||||||||| ||||||||||||||||||||    
T  32010065 agtagataaactcaaataagtcaatccaaacag 32010097  T

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Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 200 - 232
Target Start/End: Complemental strand, 40335823 - 40335791
Alignment:
Q  200 agtagataaacttaaataagtcaatccaaacag 232  Q
    |||||||||||| ||||||||||||||||||||    
T  40335823 agtagataaactcaaataagtcaatccaaacag 40335791  T

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Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 186 - 225
Target Start/End: Original strand, 4200340 - 4200379
Alignment:
Q  186 caaatgcttatatcagtagataaacttaaataagtcaatc 225  Q
    |||||||||||||||||| ||||||| |||||||||||||    
T  4200340 caaatgcttatatcagtatataaactaaaataagtcaatc 4200379  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 182 - 232
Target Start/End: Complemental strand, 37241788 - 37241739
Alignment:
Q  182 ctcgcaaatgcttatatcagtagataaacttaaataagtcaatccaaacag 232  Q
    ||||||| |||||||  |||||||||| |||||||||||||||||||||||    
T  37241788 ctcgcaagtgcttatg-cagtagataagcttaaataagtcaatccaaacag 37241739  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 190 - 231
Target Start/End: Original strand, 6292602 - 6292643
Alignment:
Q  190 tgcttatatcagtagataaacttaaataagtcaatccaaaca 231  Q
    ||||||| ||||||||||| || |||||||||||||||||||    
T  6292602 tgcttatgtcagtagataagctcaaataagtcaatccaaaca 6292643  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 200 - 233
Target Start/End: Complemental strand, 30014029 - 30013996
Alignment:
Q  200 agtagataaacttaaataagtcaatccaaacaga 233  Q
    |||||||||||| |||||||||||||||||||||    
T  30014029 agtagataaactcaaataagtcaatccaaacaga 30013996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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