View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17179_low_11 (Length: 410)
Name: NF17179_low_11
Description: NF17179
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17179_low_11 |
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Alignment Details
Target: chr1 (Bit Score: 157; Significance: 2e-83; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 229 - 393
Target Start/End: Complemental strand, 52238792 - 52238628
Alignment:
| Q |
229 |
gcaaataatccaaaaataatttataaacagagacaaaataatttgtttttcttcttaaaaagtgtcatgtaaataatctatgttattgaatatcataata |
328 |
Q |
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| T |
52238792 |
gcaaataatccaaaaataatttataaacagagacaaaataatttgtttttcttcttaaaaagtgtcatgtaaataatctaagttattgaatatcataata |
52238693 |
T |
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| Q |
329 |
tatttttatataattaataacaaaaggttaatcacttttattttgtgtgcatactgcatattacc |
393 |
Q |
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| T |
52238692 |
tatttttatataattaataacaaacggttaatcacttttattttgtgtgcatactgcatattacc |
52238628 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 148; E-Value: 5e-78
Query Start/End: Original strand, 11 - 162
Target Start/End: Complemental strand, 52239051 - 52238900
Alignment:
| Q |
11 |
cataggagaattcttgatatgtattttagttttgatgaatactgctaatcctctaagtaaaattaattctttcaaaatttatttacaaaaatatgacata |
110 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52239051 |
cataggagaattcttgatatgtattttagttttgatgaatactgctaatcctctaagtaaaattaattctttcaaaatttatttacaaaaatatgacata |
52238952 |
T |
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| Q |
111 |
atatttcttaattggatccaaccaaacttcatcaatatcgacgtgttcagct |
162 |
Q |
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| T |
52238951 |
atatttcataattggatccaaccaaacttcatcaatatcgacgtgttcagct |
52238900 |
T |
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