View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17179_low_12 (Length: 406)
Name: NF17179_low_12
Description: NF17179
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17179_low_12 |
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Alignment Details
Target: chr4 (Bit Score: 96; Significance: 6e-47; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 231 - 349
Target Start/End: Complemental strand, 51709196 - 51709075
Alignment:
| Q |
231 |
acaagacaaaagctaaagagatg---gaatctttccttttttgctcatttcaaccttagctttcatcttttccttccacaccttccaaaacacacccatt |
327 |
Q |
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| T |
51709196 |
acaagacaaaagctaaagagaagaaggaatctttccttttttcctcatttcaaccttagctttcatcttttccttccacaccttcccaaacacacccatt |
51709097 |
T |
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| Q |
328 |
tttgtggaaatcaaggctgcca |
349 |
Q |
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|||||||||||||||||||||| |
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| T |
51709096 |
tttgtggaaatcaaggctgcca |
51709075 |
T |
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Target: chr4; HSP #2
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 121 - 195
Target Start/End: Complemental strand, 51709268 - 51709194
Alignment:
| Q |
121 |
aagttgacttaatcagaaatcatcttcttcatacatcccatatttgtgctactttttcaggaatctttctccaca |
195 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51709268 |
aagttgacttaatcataaatcatcttcttcatacatcccatatttgtgctactttttcaggaatctttctccaca |
51709194 |
T |
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