View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17179_low_13 (Length: 397)

Name: NF17179_low_13
Description: NF17179
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17179_low_13
NF17179_low_13
[»] chr5 (21 HSPs)
chr5 (1-389)||(16700320-16700707)
chr5 (83-389)||(22846594-22846930)
chr5 (214-389)||(23274533-23274710)
chr5 (219-389)||(25917404-25917574)
chr5 (214-362)||(20057608-20057757)
chr5 (257-389)||(20971812-20971944)
chr5 (2-58)||(22846549-22846605)
chr5 (219-389)||(18957969-18958141)
chr5 (219-389)||(24660318-24660486)
chr5 (219-389)||(27736268-27736439)
chr5 (79-182)||(23274765-23274868)
chr5 (219-389)||(24511498-24511668)
chr5 (80-182)||(17304569-17304671)
chr5 (258-357)||(23375064-23375164)
chr5 (219-389)||(24129077-24129247)
chr5 (69-126)||(27736566-27736623)
chr5 (80-178)||(18957817-18957915)
chr5 (7-140)||(18340782-18340914)
chr5 (219-351)||(25087615-25087748)
chr5 (219-351)||(25145584-25145717)
chr5 (219-267)||(19765007-19765055)
[»] chr3 (13 HSPs)
chr3 (214-389)||(19305679-19305855)
chr3 (214-357)||(5555024-5555168)
chr3 (214-389)||(13885325-13885501)
chr3 (219-389)||(23295491-23295661)
chr3 (258-389)||(24507390-24507521)
chr3 (235-355)||(24698259-24698378)
chr3 (8-97)||(19300927-19301016)
chr3 (296-381)||(25921641-25921725)
chr3 (103-174)||(19305556-19305626)
chr3 (331-389)||(4733137-4733194)
chr3 (1-127)||(7652375-7652500)
chr3 (331-389)||(8942544-8942601)
chr3 (219-252)||(13079925-13079958)
[»] chr7 (18 HSPs)
chr7 (214-374)||(9653373-9653533)
chr7 (229-389)||(10375652-10375813)
chr7 (219-389)||(29699173-29699343)
chr7 (219-379)||(10203885-10204046)
chr7 (219-389)||(5224113-5224283)
chr7 (219-325)||(10939217-10939324)
chr7 (214-353)||(30239141-30239281)
chr7 (219-284)||(17191508-17191573)
chr7 (262-357)||(13390579-13390675)
chr7 (219-374)||(19018340-19018496)
chr7 (276-389)||(9991160-9991273)
chr7 (331-389)||(11347488-11347545)
chr7 (219-376)||(12355718-12355876)
chr7 (219-252)||(831015-831048)
chr7 (219-252)||(1196195-1196228)
chr7 (219-252)||(1375998-1376031)
chr7 (81-182)||(10939056-10939157)
chr7 (293-389)||(19335858-19335955)
[»] chr4 (7 HSPs)
chr4 (214-374)||(13524398-13524558)
chr4 (220-380)||(21070497-21070657)
chr4 (214-389)||(10491971-10492146)
chr4 (277-374)||(16656231-16656330)
chr4 (331-389)||(20324137-20324195)
chr4 (219-389)||(7310918-7311088)
chr4 (331-389)||(39044617-39044674)
[»] scaffold0561 (1 HSPs)
scaffold0561 (214-353)||(156-295)
[»] scaffold0103 (3 HSPs)
scaffold0103 (235-388)||(39872-40026)
scaffold0103 (1-93)||(35693-35785)
scaffold0103 (331-389)||(35559-35616)
[»] chr8 (7 HSPs)
chr8 (219-389)||(24375193-24375364)
chr8 (214-389)||(16648212-16648388)
chr8 (219-389)||(14992734-14992904)
chr8 (326-365)||(22741295-22741334)
chr8 (219-308)||(18426700-18426790)
chr8 (331-389)||(24751861-24751918)
chr8 (328-369)||(24176035-24176076)
[»] chr2 (7 HSPs)
chr2 (219-357)||(24373364-24373503)
chr2 (219-357)||(29842288-29842427)
chr2 (219-375)||(17979948-17980104)
chr2 (219-357)||(25907194-25907333)
chr2 (7-110)||(19391163-19391265)
chr2 (296-389)||(18595129-18595221)
chr2 (214-251)||(39666644-39666681)
[»] chr1 (17 HSPs)
chr1 (214-388)||(17317719-17317894)
chr1 (263-389)||(29984439-29984566)
chr1 (214-317)||(18748968-18749072)
chr1 (221-376)||(25379810-25379966)
chr1 (219-389)||(16153104-16153272)
chr1 (61-157)||(17318005-17318101)
chr1 (214-369)||(18577409-18577567)
chr1 (331-389)||(20408850-20408908)
chr1 (214-358)||(24592599-24592744)
chr1 (328-369)||(23511113-23511154)
chr1 (219-278)||(16969126-16969185)
chr1 (82-181)||(18748814-18748913)
chr1 (331-389)||(15545874-15545932)
chr1 (331-389)||(21217644-21217701)
chr1 (219-311)||(25220630-25220723)
chr1 (329-369)||(13333245-13333285)
chr1 (83-127)||(20409710-20409754)
[»] scaffold0160 (1 HSPs)
scaffold0160 (277-357)||(6355-6436)
[»] scaffold1121 (1 HSPs)
scaffold1121 (259-389)||(1010-1140)
[»] scaffold0032 (1 HSPs)
scaffold0032 (288-370)||(70323-70406)
[»] chr6 (6 HSPs)
chr6 (221-389)||(20402805-20402973)
chr6 (329-388)||(6643803-6643862)
chr6 (113-179)||(13769575-13769642)
chr6 (331-389)||(15935051-15935108)
chr6 (221-381)||(25927566-25927727)
chr6 (333-389)||(24005839-24005895)
[»] scaffold0711 (1 HSPs)
scaffold0711 (235-357)||(3765-3888)
[»] scaffold0577 (2 HSPs)
scaffold0577 (219-286)||(1113-1180)
scaffold0577 (331-389)||(1011-1068)
[»] scaffold0023 (2 HSPs)
scaffold0023 (331-389)||(97325-97382)
scaffold0023 (112-156)||(97573-97618)
[»] scaffold0016 (1 HSPs)
scaffold0016 (258-357)||(17301-17401)
[»] scaffold0285 (1 HSPs)
scaffold0285 (306-389)||(20804-20886)
[»] scaffold0613 (1 HSPs)
scaffold0613 (219-252)||(4890-4923)


Alignment Details
Target: chr5 (Bit Score: 298; Significance: 1e-167; HSPs: 21)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 1 - 389
Target Start/End: Original strand, 16700320 - 16700707
Alignment:
Q  1 caccacaagtctctgacttggagtgaatcgtttcggtagttttctgaatcgtatcatgtatgaatcggttcaaaacaacttgaatcgtatcatgaaatct 100  Q
    |||||||||||||||||||||| ||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16700320 caccacaagtctctgacttggactgaatcgtttcagtggttttctgaatcgtatcatgtatgaatcggttcaaaacaacttgaatcgtatcatgaaatct 16700419  T
Q  101 ttctgacttaccttgaatcgattcaaagaaatttgaatcgcatcaatctccatcctgaggtttttgaatcgattcaaatcttcatgcatcttcattattt 200  Q
    |||| ||||||||||||||||||||||||||||||||||| |||||||||||||||| | ||||||||| |||||||||||||||||||| |||||||||    
T  16700420 ttctaacttaccttgaatcgattcaaagaaatttgaatcgtatcaatctccatcctgggatttttgaattgattcaaatcttcatgcatcatcattattt 16700519  T
Q  201 ccatannnnnnnnagctttctgaatcgattcacacatttagtgaatcgattcgcatagttgtttttggacgaatatttgcacttgccaccctttt-tata 299  Q
    ||||         |||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  16700520 ccat--tttttttagctgtctgaatcgattcacacatttagtgaatcaattcgcatagttgtttttggacgaatatttgcacttgccacccttttctata 16700617  T
Q  300 tatactcacttcatcataacactcaactcactgaatcagttgcatctattctctctagagtctctaaaccccattgttcatatattcttc 389  Q
    |||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16700618 tatactcacttcatcataacactcaactcattgaatcagatgcatctattctctctagagtctctaaaccccattgttcatatattcttc 16700707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 83 - 389
Target Start/End: Original strand, 22846594 - 22846930
Alignment:
Q  83 aatcgtatcatgaaatctttctgacttaccttgaatcgattcaaagaaatttgaatcgcatcaatctccatcctgaggtttttgaatcgattca------ 176  Q
    |||||||||||||||||||||||||||||||||||| ||||  ||| ||||||||||| |||||||| |||| ||  ||||||||||||| |||          
T  22846594 aatcgtatcatgaaatctttctgacttaccttgaattgatttgaagtaatttgaatcgtatcaatcttcatcttggtgtttttgaatcgactcagatctt 22846693  T
Q  177 --------------aatcttcatgcatcttcattatttccatannnnnnnn-agctttctgaatcgattcacacatttagtgaatcgattcgcatagttg 261  Q
                  ||||||||||||||||||||||||| | |         |||| || ||||||||||||||||||||||||||||||  ||||||||    
T  22846694 gtgtgatacatttcaatcttcatgcatcttcattatttcgagattggtttttagctgtccgaatcgattcacacatttagtgaatcgattaacatagttg 22846793  T
Q  262 tttttggacgaatatttgcacttgccaccctttt-tatatatactcacttcatcataac--------actcaactcactgaatcagttgcatctattctc 352  Q
    || ||||||||| ||||  ||||||| | ||||| |||||||||||||||| |||||||        || ||||||| ||||||||||||||||||||||    
T  22846794 ttcttggacgaaaatttatacttgccccgcttttctatatatactcacttcctcataacctcataacacccaactcattgaatcagttgcatctattctc 22846893  T
Q  353 tctagagtctctaaaccccattgttcatatattcttc 389  Q
    ||||||||||||||||| |||| ||||||||||||||    
T  22846894 tctagagtctctaaaccgcattattcatatattcttc 22846930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 214 - 389
Target Start/End: Complemental strand, 23274710 - 23274533
Alignment:
Q  214 agctttctgaatcgattcacacatttagtgaatcgattcgcatagttgtttttggacgaatatttgcacttgccaccctttt-tatatatactcacttca 312  Q
    |||| |||||||| ||||||  ||||||||||||||||| | |||||||||||||| ||| ||||||| |||||||| |||| | ||||||||||||||     
T  23274710 agctgtctgaatcaattcacctatttagtgaatcgattcacctagttgtttttggaagaaaatttgcatttgccaccattttgtttatatactcacttcc 23274611  T
Q  313 tcataacactcaactca-ctgaatcagttgcatctattctctctagagtctctaaaccccattgttcatatattcttc 389  Q
    || |||||| |||||||  ||||||||||||||||||| ||||||||| ||||||||| |||| |||||| |||||||    
T  23274610 tcgtaacacccaactcatttgaatcagttgcatctattgtctctagagactctaaacctcattcttcatacattcttc 23274533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 219 - 389
Target Start/End: Complemental strand, 25917574 - 25917404
Alignment:
Q  219 tctgaatcgattcacacatttagtgaatcgattcgcatagttgtttttggacgaatatttgcacttgccaccctttt-tatatatactcacttcatcata 317  Q
    ||||||| |||||||||||||||||||| ||||| |   ||||||||||| ||||  ||||| |||||||||||||| ||||||||| ||| || |||||    
T  25917574 tctgaattgattcacacatttagtgaattgattcactatgttgtttttggccgaaattttgctcttgccacccttttctatatatacacacatcctcata 25917475  T
Q  318 acactcaactcactgaatcagttgcatctattctctctagagtctctaaaccccattgttcatatattcttc 389  Q
    ||||  ||   | ||||||| |||||| |||||||||||| ||||| ||| | ||||||||||| |||||||    
T  25917474 acacagaaaatattgaatcaattgcatttattctctctag-gtctcaaaaactcattgttcataaattcttc 25917404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 214 - 362
Target Start/End: Complemental strand, 20057757 - 20057608
Alignment:
Q  214 agctttctgaatcgattcacacatttagtgaatcgattcgcatagttgtttttggacgaatatttgcacttgccaccctttt-tatatatactcacttca 312  Q
    |||| |||||||||||||||||||||||| | |||||||     ||||||||||| | ||| |||||||||||||| ||||| || |||||||||  ||     
T  20057757 agctgtctgaatcgattcacacatttagttattcgattcattgtgttgtttttggccaaatttttgcacttgccactcttttctacatatactcatatcc 20057658  T
Q  313 tcataacactcaactcactgaatcagttgcatctattctctctagagtct 362  Q
    ||||||||| |||   ||||||||| ||||||||||||| ||||||||||    
T  20057657 tcataacacccaatgaactgaatcatttgcatctattctatctagagtct 20057608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 257 - 389
Target Start/End: Original strand, 20971812 - 20971944
Alignment:
Q  257 agttgtttttggacgaatatttgcacttgcca-ccctttttatatatactcacttcatcataacactcaactcactgaatcagttgcatctattctctct 355  Q
    ||||||||||| ||||| |||||||||||||  |||||| |||||||||||||||| |||||||||  || | | ||||||| |||||||||||||||||    
T  20971812 agttgtttttgaacgaaaatttgcacttgccctccctttctatatatactcacttcctcataacaccaaatttattgaatcatttgcatctattctctct 20971911  T
Q  356 agagtctctaaaccccattgttcatatattcttc 389  Q
    || ||||  ||| | ||||||||||| |||||||    
T  20971912 ag-gtctaaaaaactcattgttcataaattcttc 20971944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 2 - 58
Target Start/End: Original strand, 22846549 - 22846605
Alignment:
Q  2 accacaagtctctgacttggagtgaatcgtttcggtagttttctgaatcgtatcatg 58  Q
    |||||||||||||||||| ||||||||||||||||| ||||||| ||||||||||||    
T  22846549 accacaagtctctgactttgagtgaatcgtttcggtggttttctaaatcgtatcatg 22846605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 219 - 389
Target Start/End: Original strand, 18957969 - 18958141
Alignment:
Q  219 tctgaatcgattcacacatttagtgaatcgattcgcatagttgtttttggacgaatatttgcacttgccaccctttt---tatatatactcacttcatca 315  Q
    |||||||||||||||||||| ||||||||||||| |   ||||||||||| ||||  |||||  ||||||| |||||   |||||| || ||| || |||    
T  18957969 tctgaatcgattcacacattaagtgaatcgattcactatgttgtttttggccgaaattttgcttttgccacacttttctatatatacacacacgtcctca 18958068  T
Q  316 taacactcaactcactgaatcagttgcatctattctctctagagtctctaaaccccattgttcatatattcttc 389  Q
    | |||| |||   | ||||||| |||| |||||||||||||| ||||| ||| | ||||||||||| |||||||    
T  18958069 tgacacccaaagtattgaatcatttgcttctattctctctag-gtctcaaaaactcattgttcatacattcttc 18958141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 219 - 389
Target Start/End: Original strand, 24660318 - 24660486
Alignment:
Q  219 tctgaatcgattcacacatttagtgaatcgattcgcatagttgtttttggacgaatatttgcacttgccac-cctttttatatatactcacttcatcata 317  Q
    |||||||||||||||||||||||||||||||||| | | |||| ||||||  |||  ||| ||| |||||| ||| | ||||||||||||| || |||||    
T  24660318 tctgaatcgattcacacatttagtgaatcgattcactttgttgcttttggttgaaattttacacctgccactcctctctatatatactcacctcctcata 24660417  T
Q  318 acactcaactcactgaatcagttgcatctattctctctagagtctctaaaccccattgttcatatattcttc 389  Q
      |||| | | | | ||||| ||| | ||||||||||||| ||||| ||| | ||||||||||| |||||||    
T  24660418 --actccaattattcaatcatttgtacctattctctctag-gtctcaaaaactcattgttcataaattcttc 24660486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 219 - 389
Target Start/End: Complemental strand, 27736439 - 27736268
Alignment:
Q  219 tctgaatcgattcacacatttagtgaatcgattcgcatagttgtttttggacgaatatttgcacttgccaccctttt-tatatatactcacttcatcata 317  Q
    |||||||| ||||| ||||||||||||||||||| |   ||| |||||||  |||   ||||||||  ||||||||| |||||||| |||||||  ||||    
T  27736439 tctgaatcaattcaaacatttagtgaatcgattcactatgttatttttggctgaaatgttgcacttaacacccttttctatatatagtcacttccacata 27736340  T
Q  318 acac-tcaactcactgaatcagttgcatctattctctctagagtctctaaaccccattgttcatatattcttc 389  Q
    |||| | |||| | ||||| | || |||||||||||||||||||||| ||||  |||| |||||| |||||||    
T  27736339 acacctaaact-attgaatgatttccatctattctctctagagtctccaaacttcattcttcatacattcttc 27736268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 79 - 182
Target Start/End: Complemental strand, 23274868 - 23274765
Alignment:
Q  79 cttgaatcgtatcatgaaatctttctgacttaccttgaatcgattcaaagaaatttgaatcgcatcaatctccatcctgaggtttttgaatcgattcaaa 178  Q
    |||||| |||||||   ||||||||| |||| | |||||||||||||||  ||||| ||||| ||||| ||||||| || || || ||||||||||||||    
T  23274868 cttgaaccgtatcacataatctttcttacttgcattgaatcgattcaaaataattttaatcgtatcaacctccatcatggggattatgaatcgattcaaa 23274769  T
Q  179 tctt 182  Q
    ||||    
T  23274768 tctt 23274765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 219 - 389
Target Start/End: Complemental strand, 24511668 - 24511498
Alignment:
Q  219 tctgaatcgattcacacatttagtgaatcgattcgcatagttgtttttggacgaatatttgcacttgccaccctttt-tatatatactcacttcatcata 317  Q
    ||||||| |||||||| |||||||| || ||||| |   ||||||||||  ||||  ||||||||| |  |||  || |||||||||||||||| |||||    
T  24511668 tctgaattgattcacatatttagtggattgattcactatgttgtttttgtccgaaattttgcacttacggccccattctatatatactcacttcctcata 24511569  T
Q  318 acactcaactcactgaatcagttgcatctattctctctagagtctctaaaccccattgttcatatattcttc 389  Q
    |||| |||   | ||||||| |||||| ||||||||| || ||||||||| | ||||||||||| |||||||    
T  24511568 acacccaaagtattgaatcatttgcatttattctctccag-gtctctaaaactcattgttcatacattcttc 24511498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 80 - 182
Target Start/End: Complemental strand, 17304671 - 17304569
Alignment:
Q  80 ttgaatcgtatcatgaaatctttctgacttaccttgaatcgattcaaagaaatttgaatcgcatcaatctccatcctgaggtttttgaatcgattcaaat 179  Q
    ||||||||||||||||||||||||||| |||  ||| |||||||||||  | ||||||||   ||||||| | ||| | | ||| |||||||||||||||    
T  17304671 ttgaatcgtatcatgaaatctttctgatttatattgtatcgattcaaaatagtttgaatcctttcaatcttcttcccgggctttatgaatcgattcaaat 17304572  T
Q  180 ctt 182  Q
    |||    
T  17304571 ctt 17304569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 258 - 357
Target Start/End: Complemental strand, 23375164 - 23375064
Alignment:
Q  258 gttgtttttggacgaatatttgcacttgccaccctttt-tatatatactcacttcatcataacactcaactcactgaatcagttgcatctattctctcta 356  Q
    ||||||||||||| ||  |||||||||||||| ||||| ||||||||| |||||| ||||||||| ||| | | || | || |||||| |||||||||||    
T  23375164 gttgtttttggacaaaactttgcacttgccactcttttctatatatacacacttcctcataacacccaattgattggaacatttgcatatattctctcta 23375065  T
Q  357 g 357  Q
    |    
T  23375064 g 23375064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 219 - 389
Target Start/End: Original strand, 24129077 - 24129247
Alignment:
Q  219 tctgaatcgattcacacatttagtgaatcgattcgcatagttgtttttggacgaatatttgcacttgccaccctttt-tatatatactcacttcatcata 317  Q
    |||||||| |||| | |||||| |||||| |||| | |||||||| ||| || || ||||||||| |||  | |||| ||||||||||| ||   |||||    
T  24129077 tctgaatcaattcgctcatttaatgaatcaattcacttagttgttattgcacaaaaatttgcactagccctcattttctatatatactccctctctcata 24129176  T
Q  318 acactcaactcactgaatcagttgcatctattctctctagagtctctaaaccccattgttcatatattcttc 389  Q
    || |  || ||| ||||||| ||||||||||||||||| | ||||| ||| | ||||||||||| |||||||    
T  24129177 actcctaattcattgaatcatttgcatctattctctctcg-gtctcaaaaactcattgttcataaattcttc 24129247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 69 - 126
Target Start/End: Complemental strand, 27736623 - 27736566
Alignment:
Q  69 ttcaaaacaacttgaatcgtatcatgaaatctttctgacttaccttgaatcgattcaa 126  Q
    |||||||||  |||||||||||||||||| || |||||||||  ||||||||||||||    
T  27736623 ttcaaaacagtttgaatcgtatcatgaaaactctctgacttatgttgaatcgattcaa 27736566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 80 - 178
Target Start/End: Original strand, 18957817 - 18957915
Alignment:
Q  80 ttgaatcgtatcatgaaatctttctgacttaccttgaatcgattcaaagaaatttgaatcgcatcaatctccatcctgaggtttttgaatcgattcaaa 178  Q
    |||||| ||||||| ||| || ||||||||   ||||||||||||| |  ||||||||| | |||||||| ||||| | | | ||||||||||||||||    
T  18957817 ttgaattgtatcataaaaactgtctgactttggttgaatcgattcataagaatttgaatggtatcaatcttcatccagggatatttgaatcgattcaaa 18957915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 7 - 140
Target Start/End: Complemental strand, 18340914 - 18340782
Alignment:
Q  7 aagtctctgacttggagtgaatcgtttcggtagttttctgaatcgtatcatgtatgaatcggttcaaaacaacttgaatcgtatcatgaaatctttctga 106  Q
    |||||| |||||||| |||||| |||||   |||||| |||||| |||||  | ||||||| ||||||| |  ||||||||||| ||| || |||| |||    
T  18340914 aagtctttgacttggggtgaattgtttcatgagtttt-tgaatcttatcacatctgaatcgattcaaaatattttgaatcgtatgatggaaactttttga 18340816  T
Q  107 cttaccttgaatcgattcaaagaaatttgaatcg 140  Q
    |||   ||||||||| ||||| || |||||||||    
T  18340815 cttgtgttgaatcgaatcaaataagtttgaatcg 18340782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 219 - 351
Target Start/End: Complemental strand, 25087748 - 25087615
Alignment:
Q  219 tctgaatcgattcacacatttagtgaatcgattcgcatagttgtttttggacgaatatttgcacttg-ccaccctttttatatatactcacttcatcata 317  Q
    |||||||||||||| ||||| ||||||| || || |  |||| ||||||  |||| ||||||||||| ||| | ||| | |||||||||||||| ||| |    
T  25087748 tctgaatcgattcaaacattaagtgaattgactcactcagttatttttgagcgaaaatttgcacttgcccaacttttctgtatatactcacttcctcaca 25087649  T
Q  318 acactcaactcactgaatcagttgcatctattct 351  Q
    ||||  ||   | ||||||| |||||||||||||    
T  25087648 acacaaaagatattgaatcatttgcatctattct 25087615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 219 - 351
Target Start/End: Complemental strand, 25145717 - 25145584
Alignment:
Q  219 tctgaatcgattcacacatttagtgaatcgattcgcatagttgtttttggacgaatatttgcacttg-ccaccctttttatatatactcacttcatcata 317  Q
    |||||||||||||| ||||| ||||||| || || |  |||| ||||||  |||| ||||||||||| ||| | ||| | |||||||||||||| ||| |    
T  25145717 tctgaatcgattcaaacattaagtgaattgactcactcagttatttttgagcgaaaatttgcacttgcccaacttttctgtatatactcacttcctcaca 25145618  T
Q  318 acactcaactcactgaatcagttgcatctattct 351  Q
    ||||  ||   | ||||||| |||||||||||||    
T  25145617 acacaaaagatattgaatcatttgcatctattct 25145584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 219 - 267
Target Start/End: Original strand, 19765007 - 19765055
Alignment:
Q  219 tctgaatcgattcacacatttagtgaatcgattcgcatagttgtttttg 267  Q
    ||||||||||||||| |||||| ||||||||||| |  |||||||||||    
T  19765007 tctgaatcgattcactcatttaatgaatcgattcaccaagttgtttttg 19765055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 101; Significance: 6e-50; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 214 - 389
Target Start/End: Original strand, 19305679 - 19305855
Alignment:
Q  214 agctttctgaatcgattcacacatttagtgaatcgattcgcatagttgtttttggacgaatatttgcacttgccaccctttt-tatatatactcacttca 312  Q
    |||| |||||||||||||||||||| ||||||||||||| |||||||||||||| ||  | ||||||||||  ||||||||| ||||||||||||||||     
T  19305679 agctgtctgaatcgattcacacattaagtgaatcgattcacatagttgtttttgaacataaatttgcacttctcacccttttctatatatactcacttcc 19305778  T
Q  313 tcataacactcaactcactgaatcagttgcatctattctctctagagtctctaaaccccattgttcatatattcttc 389  Q
    || |||||| ||| ||| |||||||||||||||||||| |||| ||||||||||||| |||||||||||||||||||    
T  19305779 tcgtaacacccaagtcattgaatcagttgcatctattcactcttgagtctctaaacctcattgttcatatattcttc 19305855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 214 - 357
Target Start/End: Complemental strand, 5555168 - 5555024
Alignment:
Q  214 agctttctgaatcgattcacacatttagtgaatcgattcgcatagttgtttttggacgaatatttgcacttgccaccctttt-tatatatactcacttca 312  Q
    |||| |||||||||||||||||||| |||||||| |||| |   ||||||||||| ||||  |||||||||||||||||||| ||||||||| ||||||     
T  5555168 agctgtctgaatcgattcacacattaagtgaatccattcactctgttgtttttggtcgaaattttgcacttgccacccttttctatatatacacacttcc 5555069  T
Q  313 tcataacactcaactcactgaatcagttgcatctattctctctag 357  Q
    || |||||| |||  || ||||||| ||||| |||||||||||||    
T  5555068 tcgtaacacccaaagcattgaatcatttgcaactattctctctag 5555024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 214 - 389
Target Start/End: Original strand, 13885325 - 13885501
Alignment:
Q  214 agctttctgaatcgattcacacatttagtgaatcgattcgcatagttgtttttggacgaatatttgcacttgccaccctttt-tatatatactcacttca 312  Q
    |||| ||| |||||||||||||||| ||||||||||||| |   ||||||||||| ||||  ||||||| | |||||||||| ||||||||| ||||||     
T  13885325 agctgtctaaatcgattcacacattaagtgaatcgattcactatgttgtttttggccgaaattttgcacctcccacccttttctatatatacacacttcc 13885424  T
Q  313 tcataacactcaactcactgaatcagttgcatctattctctctagagtctc-taaaccccattgttcatatattcttc 389  Q
    || |||||| |||  || ||||||| ||||||||||||||||||| |||||  |||| | |||||||||| |||||||    
T  13885425 tcgtaacacccaaaacattgaatcatttgcatctattctctctag-gtctcaaaaactcaattgttcataaattcttc 13885501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 219 - 389
Target Start/End: Original strand, 23295491 - 23295661
Alignment:
Q  219 tctgaatcgattcacacatttagtgaatcgattcgcatagttgtttttggacgaatatttgcacttgccaccctttt-tatatatactcacttcatcata 317  Q
    ||||||| |||||||||||| |||||||||||||    ||||||||||||  |||  ||||| |||||||||||||| |||||||||||||| | | |||    
T  23295491 tctgaattgattcacacattaagtgaatcgattcaataagttgtttttggctgaaattttgctcttgccacccttttctatatatactcactaccttata 23295590  T
Q  318 acactcaactcactgaatcagttgcatctattctctctagagtctctaaaccccattgttcatatattcttc 389  Q
    ||||  || ||| ||||||| ||||| ||||||||| ||| ||||| ||| | ||||||||||| |||||||    
T  23295591 acaccaaattcattgaatcatttgcaactattctctttag-gtctcaaaaactcattgttcatacattcttc 23295661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 258 - 389
Target Start/End: Original strand, 24507390 - 24507521
Alignment:
Q  258 gttgtttttggacgaatatttgcacttgcca-ccctttttatatatactcacttcatcataacactcaactcactgaatcagttgcatctattctctcta 356  Q
    ||||||||| | ||||  |||||||||| || ||| || |||||||| ||||||| ||||||||| |||   | ||||||| |||||| |||||||||||    
T  24507390 gttgttttttgccgaaattttgcacttgtcatcccattctatatatattcacttcctcataacacccaaggtattgaatcatttgcatttattctctcta 24507489  T
Q  357 gagtctctaaaccccattgttcatatattcttc 389  Q
    | ||||| ||| | ||||||||||| |||||||    
T  24507490 g-gtctcaaaaactcattgttcataaattcttc 24507521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 235 - 355
Target Start/End: Complemental strand, 24698378 - 24698259
Alignment:
Q  235 catttagtgaatcgattcgcatagttgtttttggacgaatatttgcacttgccaccctttttatatatactcacttcatcataacactcaactcactgaa 334  Q
    |||||||||||||||||| |   ||||||||||  ||||| | | ||||||||||||  ||| |||||||||||||| |||||||||  ||  || ||||    
T  24698378 catttagtgaatcgattcactatgttgtttttgcccgaatttctacacttgccaccccattt-tatatactcacttcctcataacacctaagacattgaa 24698280  T
Q  335 tcagttgcatctattctctct 355  Q
    ||| ||||| |||||||||||    
T  24698279 tcatttgcaactattctctct 24698259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 8 - 97
Target Start/End: Original strand, 19300927 - 19301016
Alignment:
Q  8 agtctctgacttggagtgaatcgtttcggtagttttctgaatcgtatcatgtatgaatcggttcaaaacaacttgaatcgtatcatgaaa 97  Q
    |||| ||||||||||  ||||||||||  |  ||||||||| |||||||| | | |||||  ||||| ||||||||||||||||||||||    
T  19300927 agtcgctgacttggatagaatcgtttcattgattttctgaaacgtatcatattttaatcgactcaaatcaacttgaatcgtatcatgaaa 19301016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 296 - 381
Target Start/End: Original strand, 25921641 - 25921725
Alignment:
Q  296 tatatatactcacttcatcataacactcaactcactgaatcagttgcatctattctctctagagtctctaaaccccattgttcata 381  Q
    ||||||||||||| || ||||||||| |||   | ||||||| ||||||||||||||||||| ||||| ||| | |||||||||||    
T  25921641 tatatatactcacctcctcataacacccaaagtattgaatcatttgcatctattctctctag-gtctcaaaaactcattgttcata 25921725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 103 - 174
Target Start/End: Original strand, 19305556 - 19305626
Alignment:
Q  103 ctgacttaccttgaatcgattcaaagaaatttgaatcgcatcaatctccatcctgaggtttttgaatcgatt 174  Q
    ||||||||||||||||||| |||||| ||||||||| | |||| ||| |||| |||| ||||| ||||||||    
T  19305556 ctgacttaccttgaatcga-tcaaagtaatttgaattgtatcattcttcatcttgagattttttaatcgatt 19305626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 331 - 389
Target Start/End: Original strand, 4733137 - 4733194
Alignment:
Q  331 tgaatcagttgcatctattctctctagagtctctaaaccccattgttcatatattcttc 389  Q
    ||||||| ||||||||||||||||||| ||||| ||| ||||||| ||||| |||||||    
T  4733137 tgaatcatttgcatctattctctctag-gtctcaaaaacccattgctcatacattcttc 4733194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 127
Target Start/End: Original strand, 7652375 - 7652500
Alignment:
Q  1 caccacaagtctctgacttggagtgaatcgtttcggtagttttctgaatcgtatcatgtatgaatcggttcaaaacaacttgaatcgtatcatgaaatct 100  Q
    ||||| ||||||||||||| | ||||||||||||   |||||| |||||| |||||  | | ||||| |||||||   |||||||||||||||| || ||    
T  7652375 caccagaagtctctgacttagggtgaatcgtttcatgagtttt-tgaatcttatcacctcttaatcgattcaaaattgcttgaatcgtatcatggaaact 7652473  T
Q  101 ttctgacttaccttgaatcgattcaaa 127  Q
    |||| ||||   |||||| ||||||||    
T  7652474 ttctcacttgtgttgaattgattcaaa 7652500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 331 - 389
Target Start/End: Original strand, 8942544 - 8942601
Alignment:
Q  331 tgaatcagttgcatctattctctctagagtctctaaaccccattgttcatatattcttc 389  Q
    ||||||| ||||||||||||||||||| ||||| ||| | ||||||||||| |||||||    
T  8942544 tgaatcatttgcatctattctctctag-gtctcaaaaactcattgttcatacattcttc 8942601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 219 - 252
Target Start/End: Original strand, 13079925 - 13079958
Alignment:
Q  219 tctgaatcgattcacacatttagtgaatcgattc 252  Q
    |||||||||||||| |||||||||||||||||||    
T  13079925 tctgaatcgattcaaacatttagtgaatcgattc 13079958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 98; Significance: 4e-48; HSPs: 18)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 214 - 374
Target Start/End: Complemental strand, 9653533 - 9653373
Alignment:
Q  214 agctttctgaatcgattcacacatttagtgaatcgattcgcatagttgtttttggacgaatatttgcacttgccaccctttt-tatatatactcacttca 312  Q
    |||| ||||| |||||||||||||||||||||||||||| |||||||||||||||||||| |||| ||||||| |||||||| ||||||||||||||||     
T  9653533 agctatctgactcgattcacacatttagtgaatcgattcacatagttgtttttggacgaaaattttcacttgc-acccttttctatatatactcacttcc 9653435  T
Q  313 tcataacactcaactcactgaatcagttgcatctattctctctagagtctctaaaccccatt 374  Q
    ||||||||| ||||||| ||||| |||| |||| ||||||||||||||||||||||| ||||    
T  9653434 tcataacacccaactcattgaattagttacatcgattctctctagagtctctaaacctcatt 9653373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 229 - 389
Target Start/End: Original strand, 10375652 - 10375813
Alignment:
Q  229 ttcacacatttagtgaatcgattcg-catagttgtttttggacgaatatttgcacttgccaccctttt-tatatatactcacttcatcataacactcaac 326  Q
    |||| |||||||||||||||||||  ||| ||||||||| | ||||  ||||||| |||||||||||| |||||||| ||||||| ||||||||| ||||    
T  10375652 ttcatacatttagtgaatcgattcaacat-gttgttttttgtcgaaattttgcacctgccacccttttctatatatattcacttcctcataacacccaac 10375750  T
Q  327 tcactgaatcagttgcatctattctctctagagtctctaaaccccattgttcatatattcttc 389  Q
    ||| |||||||||||||||||||||||||||| |||| ||||| ||||||||||| |||||||    
T  10375751 tcattgaatcagttgcatctattctctctagaatctccaaacctcattgttcatacattcttc 10375813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 219 - 389
Target Start/End: Original strand, 29699173 - 29699343
Alignment:
Q  219 tctgaatcgattcacacatttagtgaatcgattcgcatagttgtttttggacgaatatttgcacttgccaccctttt-tatatatactcacttcatcata 317  Q
    |||||||||||||||||| | ||||||||||||| |   ||||| ||||| ||||| ||||||||| |||||||||| ||||||||| |||||| |||||    
T  29699173 tctgaatcgattcacacagtaagtgaatcgattcactctgttgtatttggccgaatttttgcactttccacccttttctatatatacacacttcctcata 29699272  T
Q  318 acactcaactcactgaatcagttgcatctattctctctagagtctctaaaccccattgttcatatattcttc 389  Q
    |||| ||| ||| ||||||| ||||| ||||||||||||| ||||| ||| | ||||||||||| |||||||    
T  29699273 acacccaattcattgaatcatttgcaactattctctctag-gtctcaaaaactcattgttcatacattcttc 29699343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 219 - 379
Target Start/End: Complemental strand, 10204046 - 10203885
Alignment:
Q  219 tctgaatcgattcacacatttagtgaatcgattcgcatagttgtttttggacgaatatttgcacttgccaccctttt-tatatatactcacttcatcata 317  Q
    |||||||||||||||||||| |||||||||||||   | ||||||||||| ||||   ||||||||  ||||||||| |||| |||| |||||| |||||    
T  10204046 tctgaatcgattcacacattaagtgaatcgattcattttgttgtttttggccgaaatattgcacttatcacccttttctatacatacccacttcctcata 10203947  T
Q  318 aca-ctcaactcactgaatcagttgcatctattctctctagagtctctaaaccccattgttca 379  Q
    ||| || |||| ||||||||| |||||||||||| |||||||||||| || || |||||||||    
T  10203946 acacctaaact-actgaatcatttgcatctattccctctagagtctccaaccctcattgttca 10203885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 219 - 389
Target Start/End: Complemental strand, 5224283 - 5224113
Alignment:
Q  219 tctgaatcgattcacacatttagtgaatcgattcgcatagttgtttttggacgaatatttgcacttgccaccctttt--tatatatactcacttcatcat 316  Q
    |||||||||||||| ||||| ||||||||||||| |  ||||||||||||| |||  ||||||||||  || |||||  |||||||||||||||| |||     
T  5224283 tctgaatcgattcaaacattaagtgaatcgattcactcagttgtttttggatgaaattttgcacttg-tactctttttctatatatactcacttcctcac 5224185  T
Q  317 aacactcaactcactgaatcagttgcatctattctctctagagtctctaaaccccattgttcatatattcttc 389  Q
    |||||  || ||| ||||||| |||||| |||||||||||| ||||| ||| | ||||||||||| |||||||    
T  5224184 aacaccaaaatcattgaatcatttgcatatattctctctag-gtctcaaaaactcattgttcataaattcttc 5224113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 219 - 325
Target Start/End: Original strand, 10939217 - 10939324
Alignment:
Q  219 tctgaatcgattcacacatttagtgaatcgattcgcatagttgtttttggacgaatatttgcacttgccaccctttt-tatatatactcacttcatcata 317  Q
    ||||||| |||||||  |||||||||||| |||| |||||||||||||||| ||| |||||||||| ||  ||||||  ||||||||||||||| |||||    
T  10939217 tctgaattgattcacggatttagtgaatcaattcacatagttgtttttggaagaaaatttgcacttaccctccttttcaatatatactcacttcctcata 10939316  T
Q  318 acactcaa 325  Q
    ||||||||    
T  10939317 acactcaa 10939324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 214 - 353
Target Start/End: Complemental strand, 30239281 - 30239141
Alignment:
Q  214 agctttctgaatcgattcacacatttagtgaatcgattcgcatagttgtttttggacgaatatttgcacttgccaccctttt-tatatatactcacttca 312  Q
    |||| |||||||||||||||||||| ||||||||||||| |   |||||||||||  |||  |||||||||||||||||||| ||||||||| || ||      
T  30239281 agctgtctgaatcgattcacacattaagtgaatcgattcaccatgttgtttttggctgaaattttgcacttgccacccttttctatatatacacattttc 30239182  T
Q  313 tcataacactcaactcactgaatcagttgcatctattctct 353  Q
    ||  ||||| ||| | | ||||||| |||||||||||||||    
T  30239181 tcgcaacacccaaattattgaatcatttgcatctattctct 30239141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 219 - 284
Target Start/End: Complemental strand, 17191573 - 17191508
Alignment:
Q  219 tctgaatcgattcacacatttagtgaatcgattcgcatagttgtttttggacgaatatttgcactt 284  Q
    ||||||||||||||| |||||| ||||||||||| | |||||||||||| ||||| ||||||||||    
T  17191573 tctgaatcgattcactcatttaatgaatcgattcacttagttgtttttgcacgaaaatttgcactt 17191508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 262 - 357
Target Start/End: Original strand, 13390579 - 13390675
Alignment:
Q  262 tttttggacgaatatttgcacttgccacc-ctttttatatatactcacttcatcataacactcaactcactgaatcagttgcatctattctctctag 357  Q
    ||||||| | ||| ||||||||||||||  |||| |||||||||||||||| ||||||| |||||   | ||||||| |||||||||||||||||||    
T  13390579 tttttggccaaatttttgcacttgccacttctttctatatatactcacttcctcataactctcaaaatattgaatcatttgcatctattctctctag 13390675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 219 - 374
Target Start/End: Original strand, 19018340 - 19018496
Alignment:
Q  219 tctgaatcgattcacacatttagtgaatcgattcgc-atagttgtttttggacgaatatttgcacttgccaccctttt-tatatatactcacttcatcat 316  Q
    |||||||||| ||||||||| ||||||||||||| | ||| |||||||||| | ||| | ||||||| |||| |||   ||||||||||||  |  ||||    
T  19018340 tctgaatcgaatcacacattaagtgaatcgattcactata-ttgtttttggccaaatttgtgcacttaccactcttcactatatatactcatattctcat 19018438  T
Q  317 aacactcaactcactgaatcagttgcatctattctctctagagtctctaaaccccatt 374  Q
    ||||| |||   ||| ||||| |||||| ||||||||||| |||||||||||| ||||    
T  19018439 aacacccaaactacttaatcatttgcatttattctctctaaagtctctaaacctcatt 19018496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 276 - 389
Target Start/End: Complemental strand, 9991273 - 9991160
Alignment:
Q  276 tttgcacttgccaccctttt-tatatatactcacttcatcataacactcaactcactgaatcagttgcatctattctctctagagtctctaaaccccatt 374  Q
    ||||| ||| |||||||||| |||||||||||||| | |||||||||  || | | ||||||| ||||| |||||||||||||| |||| ||| | ||||    
T  9991273 tttgctctttccacccttttctatatatactcactacctcataacaccaaattaattgaatcatttgcaactattctctctaga-tctcaaaaactcatt 9991175  T
Q  375 gttcatatattcttc 389  Q
    |||| || |||||||    
T  9991174 gttcgtacattcttc 9991160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 331 - 389
Target Start/End: Complemental strand, 11347545 - 11347488
Alignment:
Q  331 tgaatcagttgcatctattctctctagagtctctaaaccccattgttcatatattcttc 389  Q
    ||||||| ||||||||||||||||||| ||||| ||| | ||||||||||| |||||||    
T  11347545 tgaatcatttgcatctattctctctag-gtctcaaaaactcattgttcatacattcttc 11347488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 219 - 376
Target Start/End: Original strand, 12355718 - 12355876
Alignment:
Q  219 tctgaatcgattcacacatttagtgaatcgattcgcatagttgtttttggacgaatatttgcacttgccaccctttt-tatatatactcacttcatcata 317  Q
    ||||||| ||||||  |||| ||||||||||||| | | | ||||||||| | ||   ||||||||  |||| |||| ||||||||| ||| ||||||||    
T  12355718 tctgaattgattcaagcattaagtgaatcgattcacgttgatgtttttggccaaaacattgcacttatcacctttttgtatatatacccacgtcatcata 12355817  T
Q  318 acactcaactcactgaatcagttgcatctattctctctagagtctctaaaccccattgt 376  Q
    ||||  ||   ||||||||| |||||| |||||||| |||| |||| ||| | ||||||    
T  12355818 acaccaaaactactgaatcatttgcatttattctctttagaatctccaaagctcattgt 12355876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 219 - 252
Target Start/End: Complemental strand, 831048 - 831015
Alignment:
Q  219 tctgaatcgattcacacatttagtgaatcgattc 252  Q
    ||||||||||||||| ||||||||||||||||||    
T  831048 tctgaatcgattcactcatttagtgaatcgattc 831015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 219 - 252
Target Start/End: Complemental strand, 1196228 - 1196195
Alignment:
Q  219 tctgaatcgattcacacatttagtgaatcgattc 252  Q
    ||||||||||||||| ||||||||||||||||||    
T  1196228 tctgaatcgattcactcatttagtgaatcgattc 1196195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 219 - 252
Target Start/End: Original strand, 1375998 - 1376031
Alignment:
Q  219 tctgaatcgattcacacatttagtgaatcgattc 252  Q
    ||||||||||||||| ||||||||||||||||||    
T  1375998 tctgaatcgattcactcatttagtgaatcgattc 1376031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 81 - 182
Target Start/End: Original strand, 10939056 - 10939157
Alignment:
Q  81 tgaatcgtatcatgaaatctttctgacttaccttgaatcgattcaaagaaatttgaatcgcatcaatctccatcctgaggtttttgaatcgattcaaatc 180  Q
    ||||| ||||||| ||||||||||||||| | |||| |||| | | |  | ||||||||| ||||| || ||||||| | ||| | ||||||||||||||    
T  10939056 tgaattgtatcataaaatctttctgacttgctttgattcgaataatatcagtttgaatcgtatcaaccttcatcctgggatttattaatcgattcaaatc 10939155  T
Q  181 tt 182  Q
    ||    
T  10939156 tt 10939157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 293 - 389
Target Start/End: Complemental strand, 19335955 - 19335858
Alignment:
Q  293 ttttatatatactcac-ttcatcataacactcaactcactgaatcagttgcatctattctctctagagtctctaaaccccattgttcatatattcttc 389  Q
    |||||||||||| ||| ||| |||||||||  ||   ||||||||| ||| ||||||||||||||| ||||| ||||| |||||| ||| | ||||||    
T  19335955 ttttatatatacccaccttcttcataacacctaaacaactgaatcatttgtatctattctctctagggtctccaaacctcattgtccatttcttcttc 19335858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 98; Significance: 4e-48; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 214 - 374
Target Start/End: Complemental strand, 13524558 - 13524398
Alignment:
Q  214 agctttctgaatcgattcacacatttagtgaatcgattcgcatagttgtttttggacgaatatttgcacttgccaccctttt-tatatatactcacttca 312  Q
    |||| ||||| |||||||||||||||||||||||||||| |||||||||||||||||||| |||| ||||||| |||||||| ||||||||||||||||     
T  13524558 agctatctgactcgattcacacatttagtgaatcgattcacatagttgtttttggacgaaaattttcacttgc-acccttttctatatatactcacttcc 13524460  T
Q  313 tcataacactcaactcactgaatcagttgcatctattctctctagagtctctaaaccccatt 374  Q
    ||||||||| ||||||| ||||| |||| |||| ||||||||||||||||||||||| ||||    
T  13524459 tcataacacccaactcattgaattagttacatcgattctctctagagtctctaaacctcatt 13524398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 220 - 380
Target Start/End: Complemental strand, 21070657 - 21070497
Alignment:
Q  220 ctgaatcgattcacacatttagtgaatcgattcgcatagttgtttttggacgaatatttgcacttgccaccctttt-tatatatactcacttcatcataa 318  Q
    |||||||||||||  |||||||||||||||||| |||||||||||||||||||| | |||||||| ||  |||||| |||||||| ||||||   |||||    
T  21070657 ctgaatcgattcagtcatttagtgaatcgattcacatagttgtttttggacgaaaaattgcacttaccctccttttctatatatattcactttcccataa 21070558  T
Q  319 cactcaactcactgaatcagttgcatctattctctctagagtctctaaaccccattgttcat 380  Q
    |   |||   | ||||||| |||||||||||||| |||| ||||| ||| | ||||||||||    
T  21070557 cttccaaaatattgaatcatttgcatctattctccctag-gtctcaaaaactcattgttcat 21070497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 214 - 389
Target Start/End: Original strand, 10491971 - 10492146
Alignment:
Q  214 agctttctgaatcgattcacacatttagtgaatcgattcgcatagttgtttttggacgaatatttgcacttgccaccctttt-tatatatactcacttca 312  Q
    |||| |||||||||||||||||||| |||||| |||||| |   ||||||||||| ||||  |||   |||||| ||||||| ||||||||| ||||||     
T  10491971 agctgtctgaatcgattcacacattaagtgaaccgattcactctgttgtttttggccgaaatttttttcttgccgcccttttctatatatacacacttcc 10492070  T
Q  313 tcataacactcaactcactgaatcagttgcatctattctctctagagtctctaaaccccattgttcatatattcttc 389  Q
    ||||||||| ||| | | ||||||| ||||| ||||| ||| ||| ||||| ||| | ||||||||||| |||||||    
T  10492071 tcataacacccaaattattgaatcatttgcaactattttctttag-gtctcaaaaactcattgttcataaattcttc 10492146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 277 - 374
Target Start/End: Original strand, 16656231 - 16656330
Alignment:
Q  277 ttgcacttgccacccttttt--atatatactcacttcatcataacactcaactcactgaatcagttgcatctattctctctagagtctctaaaccccatt 374  Q
    ||||||||||||||||||||  ||||||||| |  || || |||||| |||  || ||||||| ||||||||||||| ||||||||||| ||||| ||||    
T  16656231 ttgcacttgccaccctttttctatatatacttatatcctcctaacacccaaaccattgaatcatttgcatctattctatctagagtctccaaacctcatt 16656330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 331 - 389
Target Start/End: Complemental strand, 20324195 - 20324137
Alignment:
Q  331 tgaatcagttgcatctattctctctagagtctctaaaccccattgttcatatattcttc 389  Q
    ||||||| ||||||||| |||||||||||| || ||||| ||||||||||| |||||||    
T  20324195 tgaatcatttgcatctagtctctctagagtttccaaacctcattgttcatacattcttc 20324137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 219 - 389
Target Start/End: Complemental strand, 7311088 - 7310918
Alignment:
Q  219 tctgaatcgattcacacatttagtgaatcgattcgcatagttgtttttggacgaatatttgcacttg-ccaccctttttatatatactcacttcatcata 317  Q
    ||||||||||||||| ||||||||||||||||||   |||||||||| | |||||  ||||| ||||   ||| ||  |||||| ||||   || |||||    
T  7311088 tctgaatcgattcactcatttagtgaatcgattcatttagttgttttggcacgaaattttgctcttgattaccattactatataaactcctctcctcata 7310989  T
Q  318 acactcaactcactgaatcagttgcatctattctctctagagtctctaaaccccattgttcatatattcttc 389  Q
    ||  |||| ||| ||||||| ||||| |||||||||| || ||||| ||| | ||| ||||||| |||||||    
T  7310988 actttcaattcattgaatcatttgcaactattctctccag-gtctcaaaaactcatcgttcatacattcttc 7310918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 331 - 389
Target Start/End: Original strand, 39044617 - 39044674
Alignment:
Q  331 tgaatcagttgcatctattctctctagagtctctaaaccccattgttcatatattcttc 389  Q
    ||||||| ||||||||||||||||||| ||||| ||| | ||||||||||| |||||||    
T  39044617 tgaatcatttgcatctattctctctag-gtctcaaaaactcattgttcatacattcttc 39044674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0561 (Bit Score: 73; Significance: 3e-33; HSPs: 1)
Name: scaffold0561
Description:

Target: scaffold0561; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 214 - 353
Target Start/End: Original strand, 156 - 295
Alignment:
Q  214 agctttctgaatcgattcacacatttagtgaatcgattcgcatagttgtttttggacgaatatttgcacttgccaccctttt-tatatatactcacttca 312  Q
    |||| ||||| |||||||||||||||||| ||||||||| |||| |||||||| |||||| ||||||||||||||||||||| |||||||| |||||||     
T  156 agctatctgagtcgattcacacatttagtaaatcgattcacataattgtttttagacgaagatttgcacttgccacccttttctatatatattcacttcc 255  T
Q  313 tcataacactcaactcactgaatcagttgcatctattctct 353  Q
    ||||||||| ||| ||| | |||||||||||| ||||||||    
T  256 tcataacacccaaatcaat-aatcagttgcatatattctct 295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0103 (Bit Score: 67; Significance: 1e-29; HSPs: 3)
Name: scaffold0103
Description:

Target: scaffold0103; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 235 - 388
Target Start/End: Complemental strand, 40026 - 39872
Alignment:
Q  235 catttagtgaatcgattcgcatagttgtttttggacgaatatttgcacttgccaccctttt-tatatatactcacttcatcataacactcaactcactga 333  Q
    |||||||||||| ||||| |   ||||||||||| ||||  ||| |||||||||||||||| |||| ||| ||||||| ||||||||| |||  || |||    
T  40026 catttagtgaattgattcactatgttgtttttggccgaaatttttcacttgccacccttttctatagatagtcacttcctcataacacccaaaacattga 39927  T
Q  334 atcagttgcatctattctctctagagtctctaaaccccattgttcatatattctt 388  Q
     ||| ||||||||||||||||||||||||| ||||| ||||||||||||||||||    
T  39926 ctcatttgcatctattctctctagagtctccaaacctcattgttcatatattctt 39872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0103; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 1 - 93
Target Start/End: Complemental strand, 35785 - 35693
Alignment:
Q  1 caccacaagtctctgacttggagtgaatcgtttcggtagttttctgaatcgtatcatgtatgaatcggttcaaaacaacttgaatcgtatcat 93  Q
    |||||| ||||||||||||||||||||||||||| || || || |||| ||||||||   |||||||  |||||||||| ||||| |||||||    
T  35785 caccaccagtctctgacttggagtgaatcgtttcagttgtgttttgaaacgtatcatacttgaatcgactcaaaacaacctgaattgtatcat 35693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0103; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 331 - 389
Target Start/End: Complemental strand, 35616 - 35559
Alignment:
Q  331 tgaatcagttgcatctattctctctagagtctctaaaccccattgttcatatattcttc 389  Q
    ||||||||||||||||||||||||||| ||||| ||| | ||||||||||| |||||||    
T  35616 tgaatcagttgcatctattctctctag-gtctccaaaactcattgttcatacattcttc 35559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 64; Significance: 7e-28; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 219 - 389
Target Start/End: Complemental strand, 24375364 - 24375193
Alignment:
Q  219 tctgaatcgattcacacatttagtgaatcgattcgcatagttgtttttggacgaatatttgcacttgccacccttttt-atatatactcacttcatcata 317  Q
    ||||||||||||||| |||| ||||| ||||||| |   ||||||||||| ||||  ||||||||| ||||||||||| ||||||||||||||| |||||    
T  24375364 tctgaatcgattcacgcattaagtgactcgattcactatgttgtttttggccgaaattttgcactttccacccttttttatatatactcacttcctcata 24375265  T
Q  318 acactcaactcactgaatcagttgcatctattctctctagagtctctaaaccccattgttcatatattcttc 389  Q
     |||  ||   | ||||||| |||||| ||||||||||| |||||| ||||| ||||||||||||| |||||    
T  24375264 ccacctaaaaaattgaatcatttgcatatattctctctacagtctccaaaccacattgttcatataatcttc 24375193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 214 - 389
Target Start/End: Complemental strand, 16648388 - 16648212
Alignment:
Q  214 agctttctgaatcgattcacacatttagtgaatcgattcgcatagttgtttttggacgaatatttgcacttgccaccctttt-tatatatactcacttca 312  Q
    |||| ||||||| ||||||||||||||||||| |||||| |   ||||||||||| | ||  |||||||| ||||||||||| |||||||| |||||||     
T  16648388 agctgtctgaattgattcacacatttagtgaaacgattcaccatgttgtttttggccaaaattttgcactggccacccttttctatatatagtcacttcc 16648289  T
Q  313 tcataacactcaactcactgaatcagttgcatctattctctctagagtctctaaaccccattgttcatatattcttc 389  Q
    ||||||||| |||     ||||||| |||||| ||||||||||| |||||| || || ||||||||||| |||||||    
T  16648288 tcataacacccaaacgcttgaatcatttgcatatattctctctatagtctccaagcctcattgttcatacattcttc 16648212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 219 - 389
Target Start/End: Complemental strand, 14992904 - 14992734
Alignment:
Q  219 tctgaatcgattcacacatttagtgaatcgattcgcatagttgtttttggacgaatatttgcacttgccaccctttt-tatatatactcacttcatcata 317  Q
    |||||||||||||||||| |  || ||| ||||| |   |||| |||||| ||||  ||||||||||||| |||||| ||||||||| |||||| |||||    
T  14992904 tctgaatcgattcacacagtatgttaatagattcactctgttgattttggccgaaattttgcacttgccatccttttatatatatacacacttcctcata 14992805  T
Q  318 acactcaactcactgaatcagttgcatctattctctctagagtctctaaaccccattgttcatatattcttc 389  Q
    |||| |||   | | ||||| ||||| ||||||||||||| ||||| ||| | | ||||||||| |||||||    
T  14992804 acacccaaaaaatttaatcatttgcaactattctctctag-gtctcaaaaactctttgttcatacattcttc 14992734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 326 - 365
Target Start/End: Original strand, 22741295 - 22741334
Alignment:
Q  326 ctcactgaatcagttgcatctattctctctagagtctcta 365  Q
    |||||||||||| |||||||||||||||||||| ||||||    
T  22741295 ctcactgaatcatttgcatctattctctctagattctcta 22741334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 219 - 308
Target Start/End: Complemental strand, 18426790 - 18426700
Alignment:
Q  219 tctgaatcgattcacacatttagtgaatcgattcgcatagttgtttttggacgaatatttgcacttgccac-cctttttatatatactcac 308  Q
    |||||||||||||||| |||||| ||| | |||| |   ||||||||||| ||||| ||| |||||||||| ||| | |||||||||||||    
T  18426790 tctgaatcgattcacatatttagggaaacaattcactatgttgtttttggccgaatttttacacttgccactcctctctatatatactcac 18426700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 331 - 389
Target Start/End: Original strand, 24751861 - 24751918
Alignment:
Q  331 tgaatcagttgcatctattctctctagagtctctaaaccccattgttcatatattcttc 389  Q
    ||||||| ||||||||||| ||||||| ||||| ||| ||||||||||||| |||||||    
T  24751861 tgaatcatttgcatctattatctctag-gtctcaaaaacccattgttcatacattcttc 24751918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 328 - 369
Target Start/End: Complemental strand, 24176076 - 24176035
Alignment:
Q  328 cactgaatcagttgcatctattctctctagagtctctaaacc 369  Q
    |||||||||| ||||| ||||||||||||||||||| |||||    
T  24176076 cactgaatcatttgcagctattctctctagagtctccaaacc 24176035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 60; Significance: 2e-25; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 219 - 357
Target Start/End: Original strand, 24373364 - 24373503
Alignment:
Q  219 tctgaatcgattcacacatttagtgaatcgattcgcatagttgtttttggacgaatatttgcacttgccaccctttt-tatatatactcacttcatcata 317  Q
    ||||||| |||||||||||| ||||||||||||| |   |||||||||||  |||  |||||||||||||||||||| | ||||||| |||||| |||||    
T  24373364 tctgaattgattcacacattaagtgaatcgattcactctgttgtttttggctgaaattttgcacttgccacccttttctgtatatacacacttcctcata 24373463  T
Q  318 acactcaactcactgaatcagttgcatctattctctctag 357  Q
    |||| ||| ||| ||||||| ||||| |||||||||||||    
T  24373464 acacccaaatcattgaatcatttgcaactattctctctag 24373503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 219 - 357
Target Start/End: Complemental strand, 29842427 - 29842288
Alignment:
Q  219 tctgaatcgattcacacatttagtgaatcgattcgcatagttgtttttggacgaatatttgcacttgccaccct-ttttatatatactcacttcatcata 317  Q
    ||||||||||||||||||||| ||||||||||||||  |||| ||||||| ||||| ||| ||||||||||||| || |||||| ||||||||| |||||    
T  29842427 tctgaatcgattcacacatttggtgaatcgattcgctaagttatttttggccgaatttttacacttgccaccctattctatataaactcacttcctcata 29842328  T
Q  318 acactcaactcactgaatcagttgcatctattctctctag 357  Q
    |||| ||  | | ||||| | |||||| ||||||||||||    
T  29842327 acacccatattattgaataatttgcatatattctctctag 29842288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 219 - 375
Target Start/End: Original strand, 17979948 - 17980104
Alignment:
Q  219 tctgaatcgattcacacatttagtgaatcgattc-gcatagttgtttttggacgaatatttgcacttgccaccctttttatatatactcacttcatcata 317  Q
    |||||||||| ||||||||| | ||||||||||| | || ||||||||||| | ||    || ||||||| |||||| ||||||||||||  ||||  ||    
T  17979948 tctgaatcgaatcacacattaaatgaatcgattcagtat-gttgtttttggccaaaatagtggacttgcccccctttctatatatactcatatcatggta 17980046  T
Q  318 acactcaactcactgaatcagttgcatctattctctctagagtctctaaaccccattg 375  Q
    |||| |||   ||| ||||| ||||||||||||||||||||||||| ||||| |||||    
T  17980047 acacccaaacaacttaatcatttgcatctattctctctagagtctccaaacctcattg 17980104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 219 - 357
Target Start/End: Complemental strand, 25907333 - 25907194
Alignment:
Q  219 tctgaatcgattcacacatttagtgaatcgattcgcatagttgtttttggacgaatatttgcacttgc-caccctttttatatatactcacttcatcata 317  Q
    ||||||||||||| | |||||| ||||| ||||| |||||||| ||||||||||| | || ||||||| | |  ||||||||||||||||||   |||||    
T  25907333 tctgaatcgattccctcatttaatgaattgattcacatagttgattttggacgaaaaattacacttgcactcattttttatatatactcactctctcata 25907234  T
Q  318 acactcaactcactgaatcagttgcatctattctctctag 357  Q
    |  | |||   ||||||||| |||||| ||||||||||||    
T  25907233 attcccaaaatactgaatcatttgcatatattctctctag 25907194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 7 - 110
Target Start/End: Complemental strand, 19391265 - 19391163
Alignment:
Q  7 aagtctctgacttggagtgaatcgtttcggtagttttctgaatcgtatcatgtatgaatcggttcaaaacaacttgaatcgtatcatgaaatctttctga 106  Q
    ||||||||||||| | ||||||||||||  || |||||||||||| |||||| ||||||||  |||||  |  |||||||||||||  ||| || |||||    
T  19391265 aagtctctgacttagggtgaatcgtttca-taattttctgaatcgaatcatggatgaatcgagtcaaattactttgaatcgtatcaataaaactctctga 19391167  T
Q  107 ctta 110  Q
    ||||    
T  19391166 ctta 19391163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 296 - 389
Target Start/End: Original strand, 18595129 - 18595221
Alignment:
Q  296 tatatatactcacttcatcataacactcaactcactgaatcagttgcatctattctctctagagtctctaaaccccattgttcatatattcttc 389  Q
    |||||||| || |||| ||||||| |  || ||| ||||||| ||||| ||||||||||||| ||||| ||| | ||||||||||| |||||||    
T  18595129 tatatatagtctcttcctcataactcctaattcattgaatcatttgcaactattctctctag-gtctcaaaaactcattgttcatacattcttc 18595221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 214 - 251
Target Start/End: Original strand, 39666644 - 39666681
Alignment:
Q  214 agctttctgaatcgattcacacatttagtgaatcgatt 251  Q
    |||| |||||||||||||| ||||||||||||||||||    
T  39666644 agctgtctgaatcgattcatacatttagtgaatcgatt 39666681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 60; Significance: 2e-25; HSPs: 17)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 214 - 388
Target Start/End: Complemental strand, 17317894 - 17317719
Alignment:
Q  214 agctttctgaatcgattcacacatttagtgaatcgattcgcatagttgtttttggacgaatatttgcacttgccaccctttt-tatatatactcacttca 312  Q
    |||| ||||||| ||||||  |||||||||||||||||| |   |||||||||||| |||   |||||||| ||||| |||| |||||||| |||||||     
T  17317894 agctgtctgaattgattcaagcatttagtgaatcgattcactatgttgtttttggatgaaatattgcacttaccacctttttctatatatagtcacttcc 17317795  T
Q  313 tcataacactcaactcactgaatcagttgcatctattctctctagagtctctaaaccccattgttcatatattctt 388  Q
    ||||||||| |||   | ||||| | |||||| |||||||||||||||||| ||||| ||||||||||| ||||||    
T  17317794 tcataacacccaaaatattgaataatttgcatttattctctctagagtctccaaacctcattgttcatacattctt 17317719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 263 - 389
Target Start/End: Complemental strand, 29984566 - 29984439
Alignment:
Q  263 ttttggacgaatatttgcacttgccaccctttt-tatatatactcacttcatcataacactcaactcactgaatcagttgcatctattctctctagagtc 361  Q
    |||||| |||||  ||||||||  |||| |||| |||||||| ||||||| |||||||||||||  || ||||||| |||||||||||||||||||||||    
T  29984566 ttttggccgaattattgcacttatcacctttttctatatatagtcacttcctcataacactcaaaacattgaatcatttgcatctattctctctagagtc 29984467  T
Q  362 tctaaaccccattgttcatatattcttc 389  Q
    || | ||| ||||||||||| |||||||    
T  29984466 tccagacctcattgttcatacattcttc 29984439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 214 - 317
Target Start/End: Original strand, 18748968 - 18749072
Alignment:
Q  214 agctttctgaatcgattcacacatttagtgaatcgattcgcatagttgtttttggacgaatatttgcacttg-ccaccctttttatatatactcacttca 312  Q
    |||| ||| ||| |||||||||||||||||||||||||| |||||||||||||||| ||| |||||| |||| || | |||| ||||||||||||||||     
T  18748968 agctgtctaaattgattcacacatttagtgaatcgattcacatagttgtttttggaagaaaatttgctcttgccctctctttctatatatactcacttcc 18749067  T
Q  313 tcata 317  Q
    |||||    
T  18749068 tcata 18749072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 221 - 376
Target Start/End: Original strand, 25379810 - 25379966
Alignment:
Q  221 tgaatcgattcacacatttagtgaatcgattcgcatag-ttgtttttggacgaatatttgcacttgccaccctttt-tatatatactcacttcatcataa 318  Q
    |||||||| ||||||||| |||||||||||||  |||  || ||||||| | ||   ||||||||||||||||||| ||||||||||||  || || |||    
T  25379810 tgaatcgaatcacacattaagtgaatcgattca-atacattatttttggccaaaatattgcacttgccacccttttctatatatactcatatcctcttaa 25379908  T
Q  319 cactcaactcactgaatcagttgcatctattctctctagagtctctaaaccccattgt 376  Q
    |||||||   ||||||||| ||||||||||||||| ||||||||  ||||| ||||||    
T  25379909 cactcaaactactgaatcatttgcatctattctctttagagtctacaaacctcattgt 25379966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 219 - 389
Target Start/End: Original strand, 16153104 - 16153272
Alignment:
Q  219 tctgaatcgattcacacatttagtgaatcgattcgcatagttgtttttggacgaatatttgcacttgccaccctttttatatatactcacttcatcataa 318  Q
    |||||||| ||||| || |||||||||| |||||  |||||| |||||||||||| |||||||| || ||| | |||  ||||||| || |   ||||||    
T  16153104 tctgaatcaattcatacttttagtgaattgattcaaatagttatttttggacgaaaatttgcacctg-cactcatttactatatacccattctctcataa 16153202  T
Q  319 cactcaactcactgaatcagttgcatctattctctctagagtctctaaaccccattgttcatatattcttc 389  Q
    | | ||  ||| |||| || ||||||||||||||||||| ||||| ||| | ||||||||||| |||||||    
T  16153203 ctcccatttcattgaaccatttgcatctattctctctag-gtctcaaaaactcattgttcataaattcttc 16153272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 61 - 157
Target Start/End: Complemental strand, 17318101 - 17318005
Alignment:
Q  61 tgaatcggttcaaaacaacttgaatcgtatcatgaaatctttctgacttaccttgaatcgattcaaagaaatttgaatcgcatcaatctccatcctg 157  Q
    ||||||| |||||||||  |||||||||||||||||| || ||||||||   ||||||||||||| | || |||||||||  |||| || |||||||    
T  17318101 tgaatcgattcaaaacagtttgaatcgtatcatgaaaactctctgacttgtgttgaatcgattcataaaagtttgaatcgattcaaccttcatcctg 17318005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 214 - 369
Target Start/End: Complemental strand, 18577567 - 18577409
Alignment:
Q  214 agctttctgaatcgattcacacatttagtgaatcgattcgcatagttgtttttggacgaatatttgcacttgccaccctttt---tatatatactcactt 310  Q
    |||| ||||||| |||||||||||||||||| |||||||     ||||||||||| | ||  |||||||||||||| |||||   ||||||||||||  |    
T  18577567 agctgtctgaatggattcacacatttagtgactcgattcattatgttgtttttggccaaaattttgcacttgccactcttttctatatatatactcatat 18577468  T
Q  311 catcataacactcaactcactgaatcagttgcatctattctctctagagtctctaaacc 369  Q
      ||||| ||| |||   || |||||| |||||| |||||||||| ||||||| |||||    
T  18577467 tctcatatcacgcaaactacagaatcatttgcatttattctctcttgagtctccaaacc 18577409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 331 - 389
Target Start/End: Complemental strand, 20408908 - 20408850
Alignment:
Q  331 tgaatcagttgcatctattctctctagagtctctaaaccccattgttcatatattcttc 389  Q
    |||||||||| |||||||||||| || |||||| ||||| ||||||||||| |||||||    
T  20408908 tgaatcagttccatctattctctatacagtctccaaacctcattgttcatacattcttc 20408850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 214 - 358
Target Start/End: Complemental strand, 24592744 - 24592599
Alignment:
Q  214 agctttctgaatcgattcacacatttagtgaatcgattcgcatagttgtttttggacgaatatttgcacttgccaccctttt-tatatatactcacttca 312  Q
    |||| ||| |||||| ||||||||||||||| |||||||     ||||||||||  | ||||||||  |||||||||||||| |||||||| |||  ||     
T  24592744 agctgtctaaatcgaatcacacatttagtgagtcgattcattatgttgtttttgaccaaatatttgatcttgccacccttttgtatatatattcatatcc 24592645  T
Q  313 tcataaca-ctcaactcactgaatcagttgcatctattctctctaga 358  Q
    || ||||| || |||| ||||||||| ||||||||||| ||||||||    
T  24592644 tcgtaacacctaaact-actgaatcatttgcatctattatctctaga 24592599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 328 - 369
Target Start/End: Complemental strand, 23511154 - 23511113
Alignment:
Q  328 cactgaatcagttgcatctattctctctagagtctctaaacc 369  Q
    |||||||||| |||||| ||||||||||||||||||||||||    
T  23511154 cactgaatcatttgcatatattctctctagagtctctaaacc 23511113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 219 - 278
Target Start/End: Original strand, 16969126 - 16969185
Alignment:
Q  219 tctgaatcgattcacacatttagtgaatcgattcgcatagttgtttttggacgaatattt 278  Q
    ||||||||||||||| |||||||||||||||||| |   |||||||||| ||||| ||||    
T  16969126 tctgaatcgattcactcatttagtgaatcgattcaccatgttgtttttgtacgaaaattt 16969185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 82 - 181
Target Start/End: Original strand, 18748814 - 18748913
Alignment:
Q  82 gaatcgtatcatgaaatctttctgacttaccttgaatcgattcaaagaaatttgaatcgcatcaatctccatcctgaggtttttgaatcgattcaaatct 181  Q
    |||||||||||  ||||||||||||||| || |||||||||||||   | ||||||||| |||   || ||||||| |  ||||||||| ||||||||||    
T  18748814 gaatcgtatcacaaaatctttctgacttgccatgaatcgattcaagatagtttgaatcgtatcggccttcatcctgggtattttgaatcaattcaaatct 18748913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 331 - 389
Target Start/End: Original strand, 15545874 - 15545932
Alignment:
Q  331 tgaatcagttgcatctattctctctagagtctctaaaccccattgttcatatattcttc 389  Q
    ||||||| ||||||||||| ||||||||||||| | |||  |||||||||| |||||||    
T  15545874 tgaatcatttgcatctattatctctagagtctccatacctaattgttcatacattcttc 15545932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 331 - 389
Target Start/End: Original strand, 21217644 - 21217701
Alignment:
Q  331 tgaatcagttgcatctattctctctagagtctctaaaccccattgttcatatattcttc 389  Q
    ||||||| ||||||||||||||||||| ||||| ||| | ||||||||||| |||||||    
T  21217644 tgaatcaattgcatctattctctctag-gtctcaaaaactcattgttcatacattcttc 21217701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 219 - 311
Target Start/End: Original strand, 25220630 - 25220723
Alignment:
Q  219 tctgaatcgattcacacatttagtgaatcgattcgcatagttgtttttggacgaatatttgcacttgccac-cctttttatatatactcacttc 311  Q
    |||||||||||||||  ||||||||||||||||  |   ||||||||||| ||||  ||| |||||| ||| ||| | ||||||||||||||||    
T  25220630 tctgaatcgattcacgtatttagtgaatcgattaactatgttgtttttggccgaaattttacacttggcactcctctctatatatactcacttc 25220723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 329 - 369
Target Start/End: Complemental strand, 13333285 - 13333245
Alignment:
Q  329 actgaatcagttgcatctattctctctagagtctctaaacc 369  Q
    ||||||||| |||||| |||||||||||||||||| |||||    
T  13333285 actgaatcatttgcatttattctctctagagtctccaaacc 13333245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 83 - 127
Target Start/End: Complemental strand, 20409754 - 20409710
Alignment:
Q  83 aatcgtatcatgaaatctttctgacttaccttgaatcgattcaaa 127  Q
    |||||||||||||||||||| ||||||   |||||||||||||||    
T  20409754 aatcgtatcatgaaatctttatgacttgtgttgaatcgattcaaa 20409710  T

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Target: scaffold0160 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: scaffold0160
Description:

Target: scaffold0160; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 277 - 357
Target Start/End: Original strand, 6355 - 6436
Alignment:
Q  277 ttgcacttgccaccctttt-tatatatactcacttcatcataacactcaactcactgaatcagttgcatctattctctctag 357  Q
    |||| |||||||||||||| |||||||||||||| | ||||||||| ||| ||| ||||||| |||||||||||||||||||    
T  6355 ttgctcttgccacccttttctatatatactcactacctcataacacccaattcattgaatcatttgcatctattctctctag 6436  T

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Target: scaffold1121 (Bit Score: 44; Significance: 6e-16; HSPs: 1)
Name: scaffold1121
Description:

Target: scaffold1121; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 259 - 389
Target Start/End: Original strand, 1010 - 1140
Alignment:
Q  259 ttgtttttggacgaatatttgcacttgccaccctttt-tatatatactcacttcatcataacactcaactcactgaatcagttgcatctattctctctag 357  Q
    |||||||||| | ||  ||||||||||||||| |||| ||||||||| |||||| ||||||| ||||| ||| ||||||| ||| |  |||||||||||     
T  1010 ttgtttttggccaaaattttgcacttgccacctttttctatatatacacacttcctcataactctcaaatcattgaatcatttgaacttattctctcta- 1108  T
Q  358 agtctctaaaccccattgttcatatattcttc 389  Q
    |||||| ||| | ||||||||||| |||||||    
T  1109 agtctcaaaaactcattgttcatacattcttc 1140  T

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Target: scaffold0032 (Bit Score: 44; Significance: 6e-16; HSPs: 1)
Name: scaffold0032
Description:

Target: scaffold0032; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 288 - 370
Target Start/End: Original strand, 70323 - 70406
Alignment:
Q  288 accctttt-tatatatactcacttcatcataacactcaactcactgaatcagttgcatctattctctctagagtctctaaaccc 370  Q
    |||||||| |||||||| ||||||| ||||||||| |||   | ||||||||||||||||||||||||||||||||||| ||||    
T  70323 acccttttctatatatagtcacttcctcataacacccaaagtattgaatcagttgcatctattctctctagagtctctacaccc 70406  T

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Target: chr6 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 221 - 389
Target Start/End: Original strand, 20402805 - 20402973
Alignment:
Q  221 tgaatcgattcacacatttagtgaatcgattcgcatagttgtttttggacgaatatttgcacttg-ccaccctttttatatatactcacttcatcataac 319  Q
    |||||||| ||| |||||||||||||||||||   |||||||||||||||||| ||||| ||||| || | |||| ||||||||| ||| |  |||| |     
T  20402805 tgaatcgaatcatacatttagtgaatcgattcatgtagttgtttttggacgaaaatttgtacttgccctcactttctatatatacccaccttctcatcat 20402904  T
Q  320 actcaactcactgaatcagttgcatctattctctctagagtctctaaaccccattgttcatatattcttc 389  Q
    ||  || | | || |||| ||||||||||||||||||| ||||  ||| | ||||||||||| |||||||    
T  20402905 accaaaattattgtatcatttgcatctattctctctag-gtctaaaaaactcattgttcataaattcttc 20402973  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 329 - 388
Target Start/End: Complemental strand, 6643862 - 6643803
Alignment:
Q  329 actgaatcagttgcatctattctctctagagtctctaaaccccattgttcatatattctt 388  Q
    ||||||||| |||||| |||||||||||||||||| ||||| |||||  ||| |||||||    
T  6643862 actgaatcatttgcatatattctctctagagtctccaaacctcattgcccatttattctt 6643803  T

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Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 113 - 179
Target Start/End: Original strand, 13769575 - 13769642
Alignment:
Q  113 ttgaatcgattcaaagaaatttgaatcgcatcaatctccatcctgaggt-ttttgaatcgattcaaat 179  Q
    ||||||| |||||  |||||||||||||||||||||| ||||||| | | || |||||||||||||||    
T  13769575 ttgaatcaattcattgaaatttgaatcgcatcaatcttcatcctgggctcttgtgaatcgattcaaat 13769642  T

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Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 331 - 389
Target Start/End: Original strand, 15935051 - 15935108
Alignment:
Q  331 tgaatcagttgcatctattctctctagagtctctaaaccccattgttcatatattcttc 389  Q
    ||||||| ||||||||||||||||||| ||||| ||| | ||||||||||| |||||||    
T  15935051 tgaatcatttgcatctattctctctag-gtctcaaaaactcattgttcatacattcttc 15935108  T

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Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 221 - 381
Target Start/End: Original strand, 25927566 - 25927727
Alignment:
Q  221 tgaatcgattcacacatttagtgaatcgattcgcatagttgtttttggacgaatatttgcacttgccaccctttt-tatatatactcacttcatcataac 319  Q
    ||||||||||||  | |||| |||||| |||| |   ||||||||||| ||||  ||||||||| ||||||||||  ||||| ||||||||   |||| |    
T  25927566 tgaatcgattcaagcctttaatgaatcaattcactatgttgtttttggccgaaattttgcacttaccacccttttcgatataaactcactttcacatacc 25927665  T
Q  320 actcaactcactgaatcagttgcatctattctctctagagtctctaaaccccattgttcata 381  Q
    || ||| | | | ||||| | ||||||||| ||| ||||||||| ||| | |||||||||||    
T  25927666 acccaaattattcaatcattcgcatctattatctatagagtctccaaagctcattgttcata 25927727  T

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Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 333 - 389
Target Start/End: Complemental strand, 24005895 - 24005839
Alignment:
Q  333 aatcagttgcatctattctctctagagtctctaaaccccattgttcatatattcttc 389  Q
    ||||| ||||||||||||||||||||||||  ||||| |||| ||||| | ||||||    
T  24005895 aatcatttgcatctattctctctagagtcttcaaacctcatttttcatttgttcttc 24005839  T

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Target: scaffold0711 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0711
Description:

Target: scaffold0711; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 235 - 357
Target Start/End: Original strand, 3765 - 3888
Alignment:
Q  235 catttagtgaatcgattcgcatagttgtttttggacgaatatttgcacttgcca-ccctttttatatatactcacttcatcataacactcaactcactga 333  Q
    ||||||||||||||||||  | ||||  ||||| || || |||||||||||||  |||||| |||||||||||||||| |||||||||  || | | | |    
T  3765 catttagtgaatcgattcaaacagtttgttttgaacaaaaatttgcacttgccttccctttctatatatactcacttcctcataacaccaaaattattca 3864  T
Q  334 atcagttgcatctattctctctag 357  Q
    |||| |||||| ||||||||||||    
T  3865 atcatttgcatatattctctctag 3888  T

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Target: scaffold0577 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: scaffold0577
Description:

Target: scaffold0577; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 219 - 286
Target Start/End: Complemental strand, 1180 - 1113
Alignment:
Q  219 tctgaatcgattcacacatttagtgaatcgattcgcatagttgtttttggacgaatatttgcacttgc 286  Q
    ||||||||||||||   |||||||||||||||||  ||||||| |||| |||||||||||||||||||    
T  1180 tctgaatcgattcagtgatttagtgaatcgattcaaatagttggttttagacgaatatttgcacttgc 1113  T

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Target: scaffold0577; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 331 - 389
Target Start/End: Complemental strand, 1068 - 1011
Alignment:
Q  331 tgaatcagttgcatctattctctctagagtctctaaaccccattgttcatatattcttc 389  Q
    ||||||| ||||||||||||||||||| ||||| ||| | ||||||||||| |||||||    
T  1068 tgaatcatttgcatctattctctctag-gtctcaaaaactcattgttcataaattcttc 1011  T

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Target: scaffold0023 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 2)
Name: scaffold0023
Description:

Target: scaffold0023; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 331 - 389
Target Start/End: Complemental strand, 97382 - 97325
Alignment:
Q  331 tgaatcagttgcatctattctctctagagtctctaaaccccattgttcatatattcttc 389  Q
    ||||||| ||||||||||||||||||| ||||| ||| |||||||||||||||||||||    
T  97382 tgaatcatttgcatctattctctctag-gtctcaaaaacccattgttcatatattcttc 97325  T

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Target: scaffold0023; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 112 - 156
Target Start/End: Complemental strand, 97618 - 97573
Alignment:
Q  112 cttgaatcgattca-aagaaatttgaatcgcatcaatctccatcct 156  Q
    |||||||||||| | |||||||||||||||||||||||| ||||||    
T  97618 cttgaatcgatttataagaaatttgaatcgcatcaatcttcatcct 97573  T

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Target: scaffold0016 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 258 - 357
Target Start/End: Original strand, 17301 - 17401
Alignment:
Q  258 gttgtttttggacgaatatttgcacttgccaccctttt-tatatatactcacttcatcataacactcaactcactgaatcagttgcatctattctctcta 356  Q
    ||||||||||||| ||  |||||||||||||| ||||| ||||||||| |||||| ||||||||| ||| | | || | || |||||| |||||||||||    
T  17301 gttgtttttggacaaaactttgcacttgccactcttttctatatatacacacttcctcataacacccaattgattggaacatttgcatatattctctcta 17400  T
Q  357 g 357  Q
    |    
T  17401 g 17401  T

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Target: scaffold0285 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold0285
Description:

Target: scaffold0285; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 306 - 389
Target Start/End: Complemental strand, 20886 - 20804
Alignment:
Q  306 cacttcatcataacactcaactcactgaatcagttgcatctattctctctagagtctctaaaccccattgttcatatattcttc 389  Q
    |||||| ||||||||| ||| ||| ||||||| ||||| ||||||||||||| ||||| ||| | ||||||||||| |||||||    
T  20886 cacttcctcataacacccaaatcattgaatcatttgcaactattctctctag-gtctcaaaaactcattgttcatacattcttc 20804  T

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Target: scaffold0613 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0613
Description:

Target: scaffold0613; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 219 - 252
Target Start/End: Original strand, 4890 - 4923
Alignment:
Q  219 tctgaatcgattcacacatttagtgaatcgattc 252  Q
    ||||||||||||||| ||||||||||||||||||    
T  4890 tctgaatcgattcactcatttagtgaatcgattc 4923  T

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