View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17179_low_14 (Length: 395)
Name: NF17179_low_14
Description: NF17179
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17179_low_14 |
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Alignment Details
Target: chr1 (Bit Score: 327; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 1 - 381
Target Start/End: Complemental strand, 12773908 - 12773528
Alignment:
| Q |
1 |
tttaaaaacttttttccagattttgttgaatgcttttgtaagaaataaattttacaaaatgaaattttaatgagagaaagagagagggtgtatggcctac |
100 |
Q |
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| T |
12773908 |
tttaaaaacttttttccagattttgttgaatgcttttgtaagaattaaattttacaaaatgaaattttaatgagagaaagagagagggtgtatggcctac |
12773809 |
T |
|
| Q |
101 |
ggtattgtggacccaaacttttgtcatgtaacgacatataggatgtgtgtaaggagtaagaaacagctatagctatatacatcactctctctctttcact |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
12773808 |
ggtattgtggacccaaacttttgtcatgtaacgacatataggatgtgtgtaaggagtaagaaacagctatagctatatacaccactctctctctttcact |
12773709 |
T |
|
| Q |
201 |
ttctctatcttgtttcgcatattctgactcactcccagacaaactttcacgtaccaccctgccccacttaaaccttacaaaaaatgtttaaagaagtaag |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
12773708 |
ttctctatcttgtttcgcatattctgactcactcccagacaaactttcacgtaccaccctgccccacttaaaacttacaaaaaatgtttaaagaagtaag |
12773609 |
T |
|
| Q |
301 |
aaaaaagtgatgannnnnnnnnnaattctccaattctatctgatgagaattggatccgtcgaaacgtaagaaaagtctgat |
381 |
Q |
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||||||||||||| |||||| ||||||||||||| |||||| |||||||||||||||||||||||||||||| |
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| T |
12773608 |
aaaaaagtgatgattttttttttaattcttcaattctatctgaagagaatgggatccgtcgaaacgtaagaaaagtctgat |
12773528 |
T |
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