View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17179_low_15 (Length: 383)

Name: NF17179_low_15
Description: NF17179
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17179_low_15
NF17179_low_15
[»] chr6 (2 HSPs)
chr6 (19-380)||(11526808-11527170)
chr6 (264-349)||(20930665-20930750)
[»] chr7 (2 HSPs)
chr7 (50-349)||(30221862-30222163)
chr7 (180-231)||(230767-230818)
[»] chr5 (2 HSPs)
chr5 (50-349)||(17627726-17628027)
chr5 (179-217)||(26206607-26206645)
[»] chr3 (3 HSPs)
chr3 (50-349)||(32022260-32022561)
chr3 (180-231)||(12488395-12488446)
chr3 (180-241)||(4083467-4083528)
[»] chr2 (3 HSPs)
chr2 (102-241)||(12747234-12747373)
chr2 (165-241)||(14699325-14699401)
chr2 (177-241)||(44882894-44882957)
[»] chr4 (1 HSPs)
chr4 (50-241)||(42877715-42877909)
[»] chr1 (3 HSPs)
chr1 (179-241)||(41341548-41341610)
chr1 (264-349)||(41341440-41341525)
chr1 (181-241)||(31402093-31402153)
[»] chr8 (1 HSPs)
chr8 (180-241)||(27051774-27051835)


Alignment Details
Target: chr6 (Bit Score: 295; Significance: 1e-165; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 295; E-Value: 1e-165
Query Start/End: Original strand, 19 - 380
Target Start/End: Complemental strand, 11527170 - 11526808
Alignment:
Q  19 tatataagaaaatagaagatagaaagagaatggaggggaccaaaccaaaactcccttatgaagagaacctaaaattaggcaaaccaattttgtttctaac 118  Q
    |||||||||| |||||||||| ||| |||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  11527170 tatataagaagatagaagatacaaaaagaagggaggggaccaaaccaaaactccctgatgaagagaacctaaaattaggcaaaccaattttgtttctaac 11527071  T
Q  119 ataggatttcctagcaaacaaaggtatattactccaaaattcataatgatttaaagtaa-gaccaaagtttgcaagggaatcagctacatgatttccttc 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||| ||||||||||| ||||    
T  11527070 ataggatttcctagcaaacaaaggtatattactccaaaattcataatgattcaaagtaaagaccaaagtttgcaagggaatcacctacatgatttgcttc 11526971  T
Q  218 tctaaaaatatgagttactatacagtttaaaccagttagggtaacttgaacattgttccaacgattactaaattgccaaggaacaagagatgaattttta 317  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||    
T  11526970 tctaaaaatatgagttactatacagtttaaacaagttagggtaacttgaacattgttccaacgattcctaaattgccaaggaacaagagatgaatttcta 11526871  T
Q  318 aaagcgtgaaccactaacatagaatttgtctccagccacaaattggtccaatggttctctgct 380  Q
    |||| |||||||||||||||||||| |||||||||||||||||| ||||||||||| ||||||    
T  11526870 aaagtgtgaaccactaacatagaatctgtctccagccacaaattagtccaatggttttctgct 11526808  T

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Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 264 - 349
Target Start/End: Complemental strand, 20930750 - 20930665
Alignment:
Q  264 tgaacattgttccaacgattactaaattgccaaggaacaagagatgaatttttaaaagcgtgaaccactaacatagaatttgtctc 349  Q
    |||||||||||||| | ||| |||| |||||| ||||||||   ||||||||||||||| || |  ||||||||||||||||||||    
T  20930750 tgaacattgttccatctatttctaatttgccatggaacaaggtttgaatttttaaaagcctgcaaaactaacatagaatttgtctc 20930665  T

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Target: chr7 (Bit Score: 87; Significance: 1e-41; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 50 - 349
Target Start/End: Complemental strand, 30222163 - 30221862
Alignment:
Q  50 ggaggggaccaaaccaaaa--ctcccttatgaagagaacctaaaattaggcaaaccaattttgtttctaacataggatttcctagcaaacaaaggtatat 147  Q
    |||||||||||||||||||  |||||| | ||||| |||||||| | ||| |||||||||||||| ||||||||||||| ||||||||||||||||||||    
T  30222163 ggaggggaccaaaccaaaaaactccctcaggaagaaaacctaaattcaggtaaaccaattttgttcctaacataggattccctagcaaacaaaggtatat 30222064  T
Q  148 tactccaaaattcataatgatttaaagtaagaccaaagtttgcaagggaatcagctacatgatttccttctctaaaaatatgagttactatacagtttaa 247  Q
     |  | |||| ||| | ||||  | ||  || ||||||||||| |||||||||||||| || |||||||| || ||||| ||||| |||||||| || |     
T  30222063 gatccaaaaaatcaaagtgatccagagacagcccaaagtttgcgagggaatcagctacttggtttccttccctgaaaatgtgagtaactatacaattcat 30221964  T
Q  248 accagttagggtaacttgaacattgttccaacgattactaaattgccaaggaacaagagatgaatttttaaaagcgtgaaccactaacatagaatttgtc 347  Q
    |  |||||   ||| ||||||||||||||| |  || || | ||||||||| || ||||  ||||| |||||||| |||||||| |||||||||| ||||    
T  30221963 attagttaatttaagttgaacattgttccatctgtttctgacttgccaaggcactagagtggaattcttaaaagcttgaaccaccaacatagaatctgtc 30221864  T
Q  348 tc 349  Q
    ||    
T  30221863 tc 30221862  T

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Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 180 - 231
Target Start/End: Complemental strand, 230818 - 230767
Alignment:
Q  180 ccaaagtttgcaagggaatcagctaca-tgatttccttctctaaaaatatgag 231  Q
    ||||||||||||||||||||||| ||| |||||||||||||||||||||||||    
T  230818 ccaaagtttgcaagggaatcagc-acactgatttccttctctaaaaatatgag 230767  T

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Target: chr5 (Bit Score: 83; Significance: 3e-39; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 50 - 349
Target Start/End: Original strand, 17627726 - 17628027
Alignment:
Q  50 ggaggggaccaaaccaaaa--ctcccttatgaagagaacctaaaattaggcaaaccaattttgtttctaacataggatttcctagcaaacaaaggtatat 147  Q
    |||||||||||||||||||  |||||| | ||||| |||||||| | ||| |||||||||||||| ||||||||||||| |||| |||||||||||||||    
T  17627726 ggaggggaccaaaccaaaaaactccctcaggaagaaaacctaaattcaggtaaaccaattttgttcctaacataggattccctaacaaacaaaggtatat 17627825  T
Q  148 tactccaaaattcataatgatttaaagtaagaccaaagtttgcaagggaatcagctacatgatttccttctctaaaaatatgagttactatacagtttaa 247  Q
     |  | |||| ||| | ||||  | ||  || ||||||||||| |||||||||||||| || |||||||| || ||||| ||||| |||||||| || |     
T  17627826 gatccaaaaaatcaaagtgatccagagacagcccaaagtttgcgagggaatcagctacttggtttccttccctgaaaatgtgagtaactatacaattcat 17627925  T
Q  248 accagttagggtaacttgaacattgttccaacgattactaaattgccaaggaacaagagatgaatttttaaaagcgtgaaccactaacatagaatttgtc 347  Q
    |  |||||   ||| ||||||||||||||| |  || || | ||||||||| || ||||  ||||| |||||||| |||||||| |||||||||| ||||    
T  17627926 attagttaatttaagttgaacattgttccatctgtttctgacttgccaaggcactagagtggaattcttaaaagcttgaaccaccaacatagaatctgtc 17628025  T
Q  348 tc 349  Q
    ||    
T  17628026 tc 17628027  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 179 - 217
Target Start/End: Complemental strand, 26206645 - 26206607
Alignment:
Q  179 accaaagtttgcaagggaatcagctacatgatttccttc 217  Q
    ||||||||||||||||||||| ||||| |||||||||||    
T  26206645 accaaagtttgcaagggaatctgctacctgatttccttc 26206607  T

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Target: chr3 (Bit Score: 83; Significance: 3e-39; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 50 - 349
Target Start/End: Complemental strand, 32022561 - 32022260
Alignment:
Q  50 ggaggggaccaaaccaaaa--ctcccttatgaagagaacctaaaattaggcaaaccaattttgtttctaacataggatttcctagcaaacaaaggtatat 147  Q
    |||||||||||||||||||  |||||| | ||||| |||||||| | ||| |||||||||||||| ||||| ||||||| ||||||||||||||||||||    
T  32022561 ggaggggaccaaaccaaaaaactccctcaggaagaaaacctaaattcaggtaaaccaattttgttcctaacgtaggattccctagcaaacaaaggtatat 32022462  T
Q  148 tactccaaaattcataatgatttaaagtaagaccaaagtttgcaagggaatcagctacatgatttccttctctaaaaatatgagttactatacagtttaa 247  Q
     |  | |||| ||| | ||||  | ||  || ||||||||||| |||||||||||||| || |||||||| || ||||| ||||| |||||||| || |     
T  32022461 gatccaaaaaatcaaagtgatccagagacagcccaaagtttgcgagggaatcagctacttggtttccttccctgaaaatgtgagtaactatacaattcat 32022362  T
Q  248 accagttagggtaacttgaacattgttccaacgattactaaattgccaaggaacaagagatgaatttttaaaagcgtgaaccactaacatagaatttgtc 347  Q
    |  |||||   ||| ||||||||||||||| |  || || | ||||||||| || ||||  ||||| |||||||| |||||||| |||||||||| ||||    
T  32022361 attagttaatttaagttgaacattgttccatctgtttctgacttgccaaggcactagagtggaattcttaaaagcttgaaccaccaacatagaatctgtc 32022262  T
Q  348 tc 349  Q
    ||    
T  32022261 tc 32022260  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 180 - 231
Target Start/End: Complemental strand, 12488446 - 12488395
Alignment:
Q  180 ccaaagtttgcaagggaatcagctaca-tgatttccttctctaaaaatatgag 231  Q
    ||||||||||||||||||||| | ||| |||||||||||||||||||||||||    
T  12488446 ccaaagtttgcaagggaatcaac-acactgatttccttctctaaaaatatgag 12488395  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 180 - 241
Target Start/End: Complemental strand, 4083528 - 4083467
Alignment:
Q  180 ccaaagtttgcaagggaatcagctacatgatttccttctctaaaaatatgagttactataca 241  Q
    ||||||||||||||||||| ||| || || || ||||| ||||| |||||||| ||||||||    
T  4083528 ccaaagtttgcaagggaataagcaacttggttaccttccctaaagatatgagtaactataca 4083467  T

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Target: chr2 (Bit Score: 56; Significance: 4e-23; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 102 - 241
Target Start/End: Complemental strand, 12747373 - 12747234
Alignment:
Q  102 ccaattttgtttctaacataggatttcctagcaaacaaaggtatattactccaaaattcataatgatttaaagtaagaccaaagtttgcaagggaatcag 201  Q
    ||||||||||||||||||||||||| |||| ||||||||||||||||  || | || || || ||||| | ||  || ||||||||||||||||||||||    
T  12747373 ccaattttgtttctaacataggattccctaacaaacaaaggtatatttttcaagaactcgtagtgattcagagatagcccaaagtttgcaagggaatcag 12747274  T
Q  202 ctacatgatttccttctctaaaaatatgagttactataca 241  Q
    |||| || ||||||||  | ||||| ||||| ||||||||    
T  12747273 ctacttggtttccttccttgaaaatgtgagtgactataca 12747234  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 165 - 241
Target Start/End: Complemental strand, 14699401 - 14699325
Alignment:
Q  165 tgatttaaagtaagaccaaagtttgcaagggaatcagctacatgatttccttctctaaaaatatgagttactataca 241  Q
    |||||| |||| | ||||||||||||||||||||| ||||| ||||| ||||| ||| | |||| ||| ||||||||    
T  14699401 tgatttgaagttaaaccaaagtttgcaagggaatctgctacttgattcccttccctatagatataagtaactataca 14699325  T

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Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 177 - 241
Target Start/End: Complemental strand, 44882957 - 44882894
Alignment:
Q  177 agaccaaagtttgcaagggaatcagctacatgatttccttctctaaaaatatgagttactataca 241  Q
    |||||||||||||||||||||| | | || || ||||||||||||||||||||| | ||||||||    
T  44882957 agaccaaagtttgcaagggaataacc-acttggtttccttctctaaaaatatgaataactataca 44882894  T

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Target: chr4 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 50 - 241
Target Start/End: Complemental strand, 42877909 - 42877715
Alignment:
Q  50 ggaggggaccaaaccaaaactcccttat---gaagagaacctaaaattaggcaaaccaattttgtttctaacataggatttcctagcaaacaaaggtata 146  Q
    |||||||||||||||||||||||||||    ||||| |||||||| || || |||||||  |||||   |||| | |||| | | |||||||| || |||    
T  42877909 ggaggggaccaaaccaaaactcccttagtgagaagaaaacctaaagtttggtaaaccaagattgttggaaacaaacgattccttggcaaacaaggggata 42877810  T
Q  147 ttactccaaaattcataatgatttaaagtaagaccaaagtttgcaagggaatcagctacatgatttccttctctaaaaatatgagttactataca 241  Q
     ||  ||||||  || ||  ||  ||||| | ||||||| |||| ||||||||||| || ||||||||||| |||||||||||||| ||||||||    
T  42877809 ctaggccaaaaaacaaaagtatccaaagttaaaccaaagcttgcgagggaatcagcaacttgatttccttccctaaaaatatgagtgactataca 42877715  T

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Target: chr1 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 179 - 241
Target Start/End: Complemental strand, 41341610 - 41341548
Alignment:
Q  179 accaaagtttgcaagggaatcagctacatgatttccttctctaaaaatatgagttactataca 241  Q
    |||||||||||||||||||||| | || || |||||||||||||| |||||||| ||||||||    
T  41341610 accaaagtttgcaagggaatcaaccacttggtttccttctctaaatatatgagtgactataca 41341548  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 264 - 349
Target Start/End: Complemental strand, 41341525 - 41341440
Alignment:
Q  264 tgaacattgttccaacgattactaaattgccaaggaacaagagatgaatttttaaaagcgtgaaccactaacatagaatttgtctc 349  Q
    |||||||||| ||| | ||| |||| |||||| ||||||||   ||||||||||||||| || |  ||||||||||||||||||||    
T  41341525 tgaacattgtcccatctatttctaatttgccatggaacaaggtttgaatttttaaaagcctgcaaaactaacatagaatttgtctc 41341440  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 181 - 241
Target Start/End: Original strand, 31402093 - 31402153
Alignment:
Q  181 caaagtttgcaagggaatcagctacatgatttccttctctaaaaatatgagttactataca 241  Q
    ||||||||||||| ||||| || || |||||||| || ||| | |||||||||||||||||    
T  31402093 caaagtttgcaagagaatctgccacttgatttccctccctatagatatgagttactataca 31402153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 180 - 241
Target Start/End: Complemental strand, 27051835 - 27051774
Alignment:
Q  180 ccaaagtttgcaagggaatcagctacatgatttccttctctaaaaatatgagttactataca 241  Q
    ||||||||||||||||||||| | || || || ||||||||||| || ||||| ||||||||    
T  27051835 ccaaagtttgcaagggaatcaacaacttggttcccttctctaaatatgtgagtaactataca 27051774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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