View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17179_low_2 (Length: 572)
Name: NF17179_low_2
Description: NF17179
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17179_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 446; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 446; E-Value: 0
Query Start/End: Original strand, 13 - 462
Target Start/End: Complemental strand, 47102275 - 47101826
Alignment:
| Q |
13 |
aatatatataagaaagtaaaaatacaaacagttatatcataaaaggaagaaaaactagctagttccaacgactgcgcaacaaagttaagcacaacattta |
112 |
Q |
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| T |
47102275 |
aatatatataagaaagtaaaaatacaaacagttatatcataaaaggaagaaaaactagctagttccaacgactgcgcaacaaagttaagcacaacattta |
47102176 |
T |
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| Q |
113 |
tttgatagggtacttgtttaggtgaaaacgtttaatagtttgttgtactggctaaactttgagttaatcttttagttcgatcgccgacagtgtacgtaca |
212 |
Q |
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| T |
47102175 |
tttgatagggtacttgtttaggtgaaaacgtttaatagtttgttgtactggctaaactttgagttaatcttttagttcgatcgccgacagtgtacgtaca |
47102076 |
T |
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| Q |
213 |
cttaatcagtcacttgcctccgtccctttatatctaactattctgttccctctgaactttgtccttccatatctctttgcagtgcacaacaacccacttt |
312 |
Q |
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| T |
47102075 |
cttaatcagtcacttgcctccatccctttatatctaactattctgttccctctgaactttgtccttccatatctctttgcagtgcacaacaacccacttt |
47101976 |
T |
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| Q |
313 |
gcaatcatggttcaatcaaagaagttcagaggtgtcaggcaacgacattggggttcttgggtttcagagattcgtcacccacttttgtaagtttcttttc |
412 |
Q |
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| T |
47101975 |
gcaatcatggttcaatcaaagaagttcagaggtgtcaggcaacgacattggggttcttgggtttcagagattcgtcacccacttttgtaagtttcttttc |
47101876 |
T |
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| Q |
413 |
tttccattccaatctaatctagttacatatatttttcattagtcacatca |
462 |
Q |
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| T |
47101875 |
tttccattccaatctaatctagttacatatatttttcattagtcacatca |
47101826 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 459 - 551
Target Start/End: Complemental strand, 47101779 - 47101687
Alignment:
| Q |
459 |
atcagtttgtccaaatcaagaaaattatggttaattttgtcaaattcaaaatgatgtgcacatatataatatagtccttcaatggaccctcta |
551 |
Q |
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| T |
47101779 |
atcagtttgtccaaatcaagaaaattatggttaattttgtcaaattcaaaatgatgtgcacatatataatatagtccttcaatggaccctcta |
47101687 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 326 - 389
Target Start/End: Complemental strand, 2429435 - 2429372
Alignment:
| Q |
326 |
aatcaaagaagttcagaggtgtcaggcaacgacattggggttcttgggtttcagagattcgtca |
389 |
Q |
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| T |
2429435 |
aatcaaagaaattcagaggtgttaggcaacgccattggggctcttgggtctcggagattcgtca |
2429372 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 48; Significance: 4e-18; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 318 - 389
Target Start/End: Complemental strand, 44649281 - 44649210
Alignment:
| Q |
318 |
catggttcaatcaaagaagttcagaggtgtcaggcaacgacattggggttcttgggtttcagagattcgtca |
389 |
Q |
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| T |
44649281 |
catggtacattcaaagaagttcagaggtgtcaggcaacgccattggggctcttgggtctctgagattcgtca |
44649210 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 329 - 392
Target Start/End: Original strand, 49532337 - 49532400
Alignment:
| Q |
329 |
caaagaagttcagaggtgtcaggcaacgacattggggttcttgggtttcagagattcgtcaccc |
392 |
Q |
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| T |
49532337 |
caaagaagttcagaggagtcaggcagcgccagtggggctcttgggtgtcagaaattcgccaccc |
49532400 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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