View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17179_low_22 (Length: 325)

Name: NF17179_low_22
Description: NF17179
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17179_low_22
NF17179_low_22
[»] chr2 (18 HSPs)
chr2 (16-315)||(16209805-16210104)
chr2 (104-315)||(16212118-16212320)
chr2 (26-155)||(31915043-31915172)
chr2 (37-151)||(38373344-38373458)
chr2 (21-143)||(29140170-29140295)
chr2 (21-145)||(8033265-8033387)
chr2 (68-167)||(19028478-19028582)
chr2 (38-145)||(31921234-31921340)
chr2 (40-139)||(4818746-4818843)
chr2 (16-139)||(13832204-13832327)
chr2 (17-167)||(30554505-30554660)
chr2 (28-167)||(34466986-34467124)
chr2 (83-152)||(34463357-34463427)
chr2 (68-145)||(35005217-35005294)
chr2 (37-145)||(12800780-12800887)
chr2 (16-144)||(29794679-29794806)
chr2 (17-92)||(37519659-37519733)
chr2 (39-77)||(16212073-16212111)
[»] chr4 (21 HSPs)
chr4 (17-167)||(16502402-16502551)
chr4 (17-144)||(33395332-33395459)
chr4 (40-145)||(37858200-37858306)
chr4 (17-155)||(41259992-41260130)
chr4 (26-93)||(2392583-2392650)
chr4 (17-144)||(53654292-53654419)
chr4 (17-145)||(11086265-11086397)
chr4 (23-145)||(37626714-37626836)
chr4 (37-144)||(14124199-14124306)
chr4 (61-144)||(34341419-34341502)
chr4 (62-135)||(41163046-41163119)
chr4 (35-143)||(51088905-51089013)
chr4 (17-144)||(48497414-48497536)
chr4 (122-172)||(388467-388517)
chr4 (16-142)||(21865189-21865314)
chr4 (16-142)||(21921050-21921175)
chr4 (35-93)||(32906123-32906181)
chr4 (39-140)||(52837957-52838058)
chr4 (26-93)||(37645330-37645395)
chr4 (48-167)||(47519252-47519372)
chr4 (26-93)||(53650087-53650155)
[»] chr6 (7 HSPs)
chr6 (30-143)||(23131444-23131557)
chr6 (16-144)||(29694302-29694430)
chr6 (17-176)||(2838965-2839123)
chr6 (40-144)||(7592723-7592827)
chr6 (22-145)||(6454542-6454662)
chr6 (17-85)||(31490408-31490476)
chr6 (37-146)||(27673689-27673797)
[»] chr8 (12 HSPs)
chr8 (17-145)||(34653276-34653403)
chr8 (24-140)||(3423745-3423861)
chr8 (56-167)||(13636215-13636326)
chr8 (56-167)||(13736628-13736739)
chr8 (21-139)||(41086814-41086932)
chr8 (24-97)||(22488846-22488919)
chr8 (24-129)||(24334458-24334563)
chr8 (24-139)||(41168623-41168739)
chr8 (35-93)||(39753144-39753204)
chr8 (40-128)||(44167177-44167265)
chr8 (78-144)||(29374562-29374628)
chr8 (56-177)||(8488600-8488724)
[»] chr3 (8 HSPs)
chr3 (16-143)||(3432610-3432737)
chr3 (17-145)||(42005345-42005473)
chr3 (37-145)||(54153866-54153974)
chr3 (24-144)||(20137571-20137688)
chr3 (86-127)||(29398315-29398356)
chr3 (17-152)||(51312879-51313014)
chr3 (17-143)||(44765262-44765388)
chr3 (37-145)||(47510743-47510851)
[»] chr7 (12 HSPs)
chr7 (17-138)||(23070208-23070329)
chr7 (62-142)||(45411263-45411343)
chr7 (56-145)||(12139818-12139903)
chr7 (16-93)||(3338444-3338521)
chr7 (17-136)||(40024167-40024286)
chr7 (23-93)||(40019468-40019538)
chr7 (62-145)||(31245263-31245346)
chr7 (53-143)||(7833551-7833641)
chr7 (56-144)||(22680724-22680812)
chr7 (48-144)||(31860303-31860399)
chr7 (84-143)||(21946153-21946212)
chr7 (17-144)||(25240273-25240400)
[»] chr1 (13 HSPs)
chr1 (48-145)||(8772420-8772517)
chr1 (17-152)||(2193257-2193392)
chr1 (16-144)||(46536647-46536775)
chr1 (21-139)||(30264064-30264187)
chr1 (23-145)||(12188631-12188753)
chr1 (17-144)||(26701517-26701644)
chr1 (49-167)||(7330518-7330636)
chr1 (22-144)||(29020085-29020207)
chr1 (99-167)||(17969342-17969410)
chr1 (16-123)||(9552818-9552925)
chr1 (17-144)||(44603626-44603753)
chr1 (21-134)||(30350733-30350846)
chr1 (45-144)||(19703787-19703887)
[»] chr5 (17 HSPs)
chr5 (30-138)||(10418601-10418709)
chr5 (17-145)||(26401996-26402124)
chr5 (29-144)||(7611938-7612053)
chr5 (23-145)||(12487099-12487222)
chr5 (17-143)||(30251942-30252068)
chr5 (17-167)||(33085251-33085401)
chr5 (21-145)||(42641111-42641235)
chr5 (17-93)||(35626636-35626712)
chr5 (17-144)||(7736298-7736425)
chr5 (16-145)||(1637964-1638093)
chr5 (95-176)||(8716395-8716476)
chr5 (35-143)||(14157001-14157109)
chr5 (78-145)||(25731214-25731281)
chr5 (118-152)||(20078356-20078390)
chr5 (74-152)||(34023285-34023363)
chr5 (44-143)||(35980692-35980792)
chr5 (26-143)||(40132379-40132496)
[»] scaffold0007 (1 HSPs)
scaffold0007 (56-145)||(246541-246630)


Alignment Details
Target: chr2 (Bit Score: 256; Significance: 1e-142; HSPs: 18)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 16 - 315
Target Start/End: Original strand, 16209805 - 16210104
Alignment:
Q  16 ttaaggacaatggttaagaaatccattagtagaaactttatcttgaaaatacaagtgtttacttttgtcttagcaatagttaaacaactttttgttttaa 115  Q
    |||||| |||||||||||||||||| ||||||||||||| | ||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  16209805 ttaagggcaatggttaagaaatccaatagtagaaactttgttttggaaatacaagtgtttacttttgtcttagcaatagttacacaactttttgttttaa 16209904  T
Q  116 agttacttattttagtactttaaccaatgctacaaggacattcattagcattattctaaaatttaatggtgttgactccacttgcttgggttactatgag 215  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||    
T  16209905 agttacttattttagtactttaaccaatgctacaaggacactcattagcattcttctaaaatttaatcgtgttgactccacttgcttgggttactatgag 16210004  T
Q  216 ggtgctggattgttttgactgttgaacaaattgtagaatgttctggatttttgtcttgattttgttattaaacaagctgcaagatttttctctttatttt 315  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  16210005 ggtgctgggttgttttgactgttgaacaaattgtagaatgttctggatttttgtcttgattttgttattaaacaagctgcaagatttttgtctttatttt 16210104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 104 - 315
Target Start/End: Original strand, 16212118 - 16212320
Alignment:
Q  104 tttttgttttaaagttacttattttagtactttaaccaatgctacaaggacattcattagcattattctaaaatttaatggtgttgactccacttgcttg 203  Q
    ||||| ||| |||||||||||||||| || | ||| ||||||  ||||| || || |||||||| | |||||| |||| ||||||||||||| |||||||    
T  16212118 tttttatttcaaagttacttattttaatattgtaatcaatgccccaagggcactcgttagcattctcctaaaaattaacggtgttgactccaattgcttg 16212217  T
Q  204 ggttactatgagggtgctggattgttttgactgttgaacaaattgtagaatgttctggatttttgtcttgattttgttattaaacaagctgcaagatttt 303  Q
    |||||||||||||| | ||  ||||||||| ||||||||||||||||||         ||||||||||||||||||||||||||||||||||||||||||    
T  16212218 ggttactatgagggggttgtgttgttttgattgttgaacaaattgtaga---------atttttgtcttgattttgttattaaacaagctgcaagatttt 16212308  T
Q  304 tctctttatttt 315  Q
    | ||||||||||    
T  16212309 tgtctttatttt 16212320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 26 - 155
Target Start/End: Original strand, 31915043 - 31915172
Alignment:
Q  26 tggttaagaaatccattagtagaaactttatcttgaaaatacaagtgtttacttttgtcttagcaatagttaaacaactttttgttttaaagttacttat 125  Q
    |||||||| | ||||||| |||||||||| |||||||||||||||| ||||||||| || ||| |||| ||| || |||||| | |  ||| ||||||||    
T  31915043 tggttaaggattccattaatagaaactttgtcttgaaaatacaagtctttacttttttcatagaaataattacaccacttttcgatgcaaacttacttat 31915142  T
Q  126 tttagtactttaaccaatgctacaaggaca 155  Q
    |||| |||||||||||||||  ||||||||    
T  31915143 tttaatactttaaccaatgccccaaggaca 31915172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 37 - 151
Target Start/End: Original strand, 38373344 - 38373458
Alignment:
Q  37 tccattagtagaaactttatcttgaaaatacaagtgtttacttttgtcttagcaatagttaaacaactttttgttttaaagttacttattttagtacttt 136  Q
    ||||||| |||||||||||||||| |||||||||| ||||||||| ||||||||||| ||| || | |||| | |  ||| |||||||||||| || |||    
T  38373344 tccattaatagaaactttatcttggaaatacaagtttttacttttatcttagcaataattacaccatttttcgatgcaaatttacttattttaatatttt 38373443  T
Q  137 aaccaatgctacaag 151  Q
    |||||||||| ||||    
T  38373444 aaccaatgctccaag 38373458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 21 - 143
Target Start/End: Complemental strand, 29140295 - 29140170
Alignment:
Q  21 gacaatggttaagaaat--ccattagtagaaactttatcttgaaaatacaagtgtttacttttgtcttagcaatagttaaacaacttttt-gttttaaag 117  Q
    ||||||||||||| |||  |||| | |||||| ||| || ||||||||||||| |||| ||||  |||||||||| ||| |||| ||||| |||| |||     
T  29140295 gacaatggttaaggaatatccataaatagaaattttgtcctgaaaatacaagtttttattttttccttagcaataattacacaatttttttgtttcaaaa 29140196  T
Q  118 ttacttattttagtactttaaccaat 143  Q
    ||||||||||||||||||||||||||    
T  29140195 ttacttattttagtactttaaccaat 29140170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 21 - 145
Target Start/End: Original strand, 8033265 - 8033387
Alignment:
Q  21 gacaatggttaagaaatccattagtagaaactttatcttgaaaatacaagtgtttacttttgtcttagcaatagttaaacaactttttgttttaaagtta 120  Q
    ||||||| ||||| | | ||||| ||||||||||||||||||||||||||| ||||||||| | ||| ||||| ||| || |||||| | |  ||| |||    
T  8033265 gacaatgattaaggatttcattaatagaaactttatcttgaaaatacaagt-tttactttt-ttttatcaataattacaccacttttcgatgcaaattta 8033362  T
Q  121 cttattttagtactttaaccaatgc 145  Q
    ||||||||| |||||||||||||||    
T  8033363 cttattttaatactttaaccaatgc 8033387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 68 - 167
Target Start/End: Original strand, 19028478 - 19028582
Alignment:
Q  68 aagtgtttacttttgtcttagcaatagttaaacaactttttgttttaaagttac-----ttattttagtactttaaccaatgctacaaggacattcatta 162  Q
    |||| |||||||||||||||| |||| ||| |||||||||||||  ||||||||     ||||||||||||||||||||||||  |||| ||| ||||||    
T  19028478 aagtttttacttttgtcttagtaataattacacaactttttgttgcaaagttacttattttattttagtactttaaccaatgccccaagaacactcatta 19028577  T
Q  163 gcatt 167  Q
    |||||    
T  19028578 gcatt 19028582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 38 - 145
Target Start/End: Complemental strand, 31921340 - 31921234
Alignment:
Q  38 ccattagtagaaactttatcttgaaaatacaagtgtttacttttgtcttagcaatagttaaacaactttttgttttaaagttacttattttagtacttta 137  Q
    |||||| |||||||||| |||||||||||||||| |||| |||| ||||||||||  ||| || |||||| |    ||| |||||||||| |||||||||    
T  31921340 ccattaatagaaactttgtcttgaaaatacaagtattta-ttttttcttagcaatcattacaccacttttcgaggcaaacttacttatttaagtacttta 31921242  T
Q  138 accaatgc 145  Q
    ||||||||    
T  31921241 accaatgc 31921234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 40 - 139
Target Start/End: Original strand, 4818746 - 4818843
Alignment:
Q  40 attagtagaaactttatcttgaaaatacaagtgtttacttttgtcttagcaatagttaaacaactttttgttttaaagttacttattttagtactttaac 139  Q
    ||||||||||| |||  |||| |||| ||||| ||||||||| |||||  |||| ||| |||| ||||| ||| ||||||||||||||||||||||||||    
T  4818746 attagtagaaattttg-cttggaaattcaagtttttacttttatcttaataataattacacaa-tttttatttcaaagttacttattttagtactttaac 4818843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 16 - 139
Target Start/End: Complemental strand, 13832327 - 13832204
Alignment:
Q  16 ttaaggacaatggttaagaaatccattagtagaaactttatcttgaaaatacaagtgtttacttttgtcttagcaatagttaaacaactttttgttttaa 115  Q
    ||||||||| || ||||||||| | ||  |||||| ||||| || ||||||||| | ||||||||||||||||||||| | | |||   ||||| |  ||    
T  13832327 ttaaggacattgattaagaaattctttgatagaaattttattttaaaaatacaaatttttacttttgtcttagcaataatcacacagtcttttgatgcaa 13832228  T
Q  116 agttacttattttagtactttaac 139  Q
    | ||||||||||||| ||||||||    
T  13832227 aattacttattttagaactttaac 13832204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 17 - 167
Target Start/End: Complemental strand, 30554660 - 30554505
Alignment:
Q  17 taaggacaatggttaagaaatccattagtagaaactttatcttgaaaatacaagtgtttacttttgtcttagcaatagttaaacaactttttgtt----- 111  Q
    |||||||| || | ||| |||| ||||||||||| | | |||||||||| ||  | ||||||||||||||| || || ||| |||| ||||||||         
T  30554660 taaggacattgatgaaggaatctattagtagaaattatgtcttgaaaatgcacatttttacttttgtcttaacattaattacacaattttttgttgcaaa 30554561  T
Q  112 ttaaagttacttattttagtactttaaccaatgctacaaggacattcattagcatt 167  Q
    ||||||| |||||||||| || |||||||||||   ||| |||| |||||||||||    
T  30554560 ttaaagtaacttattttaatattttaaccaatgacccaaagacactcattagcatt 30554505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 28 - 167
Target Start/End: Original strand, 34466986 - 34467124
Alignment:
Q  28 gttaagaaatccattagtagaaactttatcttgaaaatacaagtgtttacttttgtcttagcaatagttaaacaactttttgttttaaagttacttattt 127  Q
    |||||||||| |||||||| ||| ||| | ||||||||  || | |||| |||  | ||||||||| ||| |||||||| | || |||| ||||||||||    
T  34466986 gttaagaaattcattagtaaaaaatttgttttgaaaatgtaaatttttagttta-tgttagcaataattacacaactttatattataaatttacttattt 34467084  T
Q  128 tagtactttaaccaatgctacaaggacattcattagcatt 167  Q
    || ||||||||| |||||| |||||| |||  ||||||||    
T  34467085 taatactttaactaatgcttcaaggatatttgttagcatt 34467124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 83 - 152
Target Start/End: Original strand, 34463357 - 34463427
Alignment:
Q  83 tcttagcaatagttaaacaactttttgttttaaag-ttacttattttagtactttaaccaatgctacaagg 152  Q
    ||||||||||| ||| |||||||||| |||||||  |||||||||||||||||||||| ||| || |||||    
T  34463357 tcttagcaataattacacaactttttattttaaaaattacttattttagtactttaactaatacttcaagg 34463427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 68 - 145
Target Start/End: Complemental strand, 35005294 - 35005217
Alignment:
Q  68 aagtgtttacttttgtcttagcaatagttaaacaactttttgttttaaagttacttattttagtactttaaccaatgc 145  Q
    |||| ||||||||| ||||||||||  ||| || |||||| | |  ||| ||||||||||||||||||||||||||||    
T  35005294 aagtctttacttttttcttagcaatgattacaccacttttcgatgcaaacttacttattttagtactttaaccaatgc 35005217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 37 - 145
Target Start/End: Complemental strand, 12800887 - 12800780
Alignment:
Q  37 tccattagtagaaactttatcttgaaaatacaagtgtttacttttgtcttagcaatagttaaacaactttttgttttaaagttacttattttagtacttt 136  Q
    ||||||| |||||||||| ||||||||||| || | ||||||||| ||||| ||||| ||| || | |||| | |  ||| |||||||| ||| ||||||    
T  12800887 tccattaatagaaactttgtcttgaaaatataaat-tttacttttttcttaacaataattagaccaattttcgatacaaatttacttatcttaatacttt 12800789  T
Q  137 aaccaatgc 145  Q
    |||||||||    
T  12800788 aaccaatgc 12800780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 16 - 144
Target Start/End: Complemental strand, 29794806 - 29794679
Alignment:
Q  16 ttaaggacaatggttaagaaatccattagtagaaactttatcttgaaaatacaagtgtttacttttgtcttagcaatagttaaacaactttttgttttaa 115  Q
    |||||| || ||||||| |||| |||||||| ||| ||| | |  ||||||  ||| ||||||||||| | | ||||| ||| || |||||||||| |||    
T  29794806 ttaagggcattggttaa-aaattcattagtaaaaattttgtgtcaaaaatatcagtttttacttttgtttaaccaataattacacgactttttgttgtaa 29794708  T
Q  116 agttacttattttagtactttaaccaatg 144  Q
    ||||| ||||||| |||||| ||||||||    
T  29794707 agttatttatttttgtacttcaaccaatg 29794679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 17 - 92
Target Start/End: Original strand, 37519659 - 37519733
Alignment:
Q  17 taaggacaatggttaagaaatccattagtagaaactttatcttgaaaatacaagtgtttacttttgtcttagcaat 92  Q
    ||||||||||||||||| | ||||||| || ||||||| ||||| |||||||||| ||||| ||| ||||| ||||    
T  37519659 taaggacaatggttaaggattccattaatataaactttgtcttg-aaatacaagtctttacctttttcttaacaat 37519733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 39 - 77
Target Start/End: Original strand, 16212073 - 16212111
Alignment:
Q  39 cattagtagaaactttatcttgaaaatacaagtgtttac 77  Q
    |||||||| |||||||||||||||||||||||| |||||    
T  16212073 cattagtaaaaactttatcttgaaaatacaagtttttac 16212111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 83; Significance: 3e-39; HSPs: 21)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 17 - 167
Target Start/End: Original strand, 16502402 - 16502551
Alignment:
Q  17 taaggacaatggttaagaaatccattagtagaaactttatcttgaaaatacaagtgtttacttttgtcttagcaatagttaaacaactttttgttttaaa 116  Q
    ||||| ||||||||||| |||||||||||||||||||| ||||| |||||||| | |||| |||| |||| |||||| ||| |||||||||||||||| |    
T  16502402 taagggcaatggttaaggaatccattagtagaaactttgtcttggaaatacaaattttta-ttttctcttggcaatatttacacaactttttgttttaga 16502500  T
Q  117 gttacttattttagtactttaaccaatgctacaaggacattcattagcatt 167  Q
    |||||||||||||||||||||||||||||  ||||| || |||||||||||    
T  16502501 gttacttattttagtactttaaccaatgccccaagggcactcattagcatt 16502551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 17 - 144
Target Start/End: Complemental strand, 33395459 - 33395332
Alignment:
Q  17 taaggacaatggttaagaaatccattagtagaaactttatcttgaaaatacaagtgtttacttttgtcttagcaatagttaaacaactttttgttttaaa 116  Q
    ||||| ||||||||||  | |||| || | |||||||||||||| |||||||||| ||||||| | ||||||||||| ||| || |||||||| | ||||    
T  33395459 taagggcaatggttaatgattccaataatggaaactttatcttggaaatacaagtctttacttatttcttagcaataattataccactttttgatgtaaa 33395360  T
Q  117 gttacttattttagtactttaaccaatg 144  Q
     ||||| |||||| ||||||||||||||    
T  33395359 cttactcattttaatactttaaccaatg 33395332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 40 - 145
Target Start/End: Complemental strand, 37858306 - 37858200
Alignment:
Q  40 attagtagaaactttatcttgaaaatacaagtgtttacttttgtcttagcaatagttaaacaactttttgttttaaagttacttattt-tagtactttaa 138  Q
    |||| ||||||||||||||||||||||||||| ||||||||| ||||||||||| |||||  |||||| | |  ||| || ||||||| |||||||||||    
T  37858306 attaatagaaactttatcttgaaaatacaagtttttacttttttcttagcaataattaaatcacttttcgatgcaaacttccttatttatagtactttaa 37858207  T
Q  139 ccaatgc 145  Q
    |||||||    
T  37858206 ccaatgc 37858200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 17 - 155
Target Start/End: Original strand, 41259992 - 41260130
Alignment:
Q  17 taaggacaatggttaagaaatccattagtagaaactttatcttgaaaatacaagtgtttacttttgtcttagcaatagttaaacaactttttgttttaaa 116  Q
    ||||| ||||||||||| | ||||||| |||||||||| |||||||||||||||| |||| |||| | ||| ||||  ||| || |||||| | |  |||    
T  41259992 taagggcaatggttaaggattccattaatagaaactttgtcttgaaaatacaagtctttattttttttttatcaatgattacaccacttttcgatgcaaa 41260091  T
Q  117 gttacttattttagtactttaaccaatgctacaaggaca 155  Q
     |||||||||||| |||||||||| ||||  ||||||||    
T  41260092 cttacttattttaatactttaaccgatgcaccaaggaca 41260130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 26 - 93
Target Start/End: Original strand, 2392583 - 2392650
Alignment:
Q  26 tggttaagaaatccattagtagaaactttatcttgaaaatacaagtgtttacttttgtcttagcaata 93  Q
    |||||||| |||||||||||||||||||| ||||| |||| ||||| |||||||||||||| ||||||    
T  2392583 tggttaaggaatccattagtagaaactttgtcttgtaaatgcaagtttttacttttgtcttggcaata 2392650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 17 - 144
Target Start/End: Complemental strand, 53654419 - 53654292
Alignment:
Q  17 taaggacaatggttaagaaatccattagtagaaactttatcttgaaaatacaagtgtttacttttgtcttagcaatagttaaacaactttttgttttaaa 116  Q
    |||||| ||||||||| || ||||| | |||||||||| ||||| |||||||||| ||||||||| |||| |||||| ||| || | |||| | |  |||    
T  53654419 taaggataatggttaaaaattccataaatagaaactttgtcttgtaaatacaagtctttacttttttcttcgcaataattacaccatttttcgatgcaaa 53654320  T
Q  117 gttacttattttagtactttaaccaatg 144  Q
      ||||||||||| ||||||||||||||    
T  53654319 catacttattttaatactttaaccaatg 53654292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 17 - 145
Target Start/End: Complemental strand, 11086397 - 11086265
Alignment:
Q  17 taaggacaatggttaagaaatccattagtagaaactttatcttgaaaatacaagtgtttacttttgtcttagcaatagttaaac--aactttttgtttt- 113  Q
    ||||| ||||||||||| | | ||||| ||| |||||||||||| |||||||| | ||||||||| ||||||||||| ||| ||  || ||||| || |     
T  11086397 taagggcaatggttaaggatttcattaataggaactttatcttggaaatacaaatctttacttttttcttagcaatatttatacctaatttttttttata 11086298  T
Q  114 -aaagttacttattttagtactttaaccaatgc 145  Q
     ||| |||||||||||| |||||||||||||||    
T  11086297 caaacttacttattttaatactttaaccaatgc 11086265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 23 - 145
Target Start/End: Complemental strand, 37626836 - 37626714
Alignment:
Q  23 caatggttaagaaatccattagtagaaactttatcttgaaaatacaagtgtttacttttgtcttagcaatagttaaacaactttttgttttaaagttact 122  Q
    ||||||||||| | | ||||| || ||||||| ||||| |||||||||| ||||||||| ||||| ||||  | | || |||||| | |  ||| |||||    
T  37626836 caatggttaaggatttcattaatataaactttgtcttggaaatacaagtctttacttttttcttatcaatgatcacaccacttttcgatgcaaacttact 37626737  T
Q  123 tattttagtactttaaccaatgc 145  Q
    |||||||||||||||||||||||    
T  37626736 tattttagtactttaaccaatgc 37626714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 37 - 144
Target Start/End: Complemental strand, 14124306 - 14124199
Alignment:
Q  37 tccattagtagaaactttatcttgaaaatacaagtgtttacttttgtcttagcaatagttaaacaactttttgttttaaagttacttattttagtacttt 136  Q
    ||||||| |||||||||| | ||| ||||| |||| ||||||||| ||||||||| | ||| || | |||| | |  ||| |||||||||||| ||||||    
T  14124306 tccattaatagaaactttgttttggaaatataagtttttacttttttcttagcaaaaattacaccatttttcgatgcaaatttacttattttaatacttt 14124207  T
Q  137 aaccaatg 144  Q
    ||||||||    
T  14124206 aaccaatg 14124199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 61 - 144
Target Start/End: Complemental strand, 34341502 - 34341419
Alignment:
Q  61 aaaatacaagtgtttacttttgtcttagcaatagttaaacaactttttgttttaaagttacttattttagtactttaaccaatg 144  Q
    ||||||||||  ||||||||||||||||||||| ||| ||||||||||  |  ||| |||| ||||| || |||||||||||||    
T  34341502 aaaatacaagattttacttttgtcttagcaataattacacaactttttaatacaaacttacatatttgagaactttaaccaatg 34341419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 62 - 135
Target Start/End: Complemental strand, 41163119 - 41163046
Alignment:
Q  62 aaatacaagtgtttacttttgtcttagcaatagttaaacaactttttgttttaaagttacttattttagtactt 135  Q
    |||||||||| ||||||||| ||||||||||| ||| || |||||| | | |||| | ||||||||||||||||    
T  41163119 aaatacaagtatttacttttttcttagcaataattacaccacttttcgatgtaaactaacttattttagtactt 41163046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 35 - 143
Target Start/End: Complemental strand, 51089013 - 51088905
Alignment:
Q  35 aatccattagtagaaactttatcttgaaaatacaagtgtttacttttgtcttagcaatagttaaacaactttttgttttaaagttacttattttagtact 134  Q
    ||||||||| || ||| | ||| ||||||||  || | ||||||||| |||||  |||| ||| |||| ||||| ||  |||||||||||||||||||||    
T  51089013 aatccattaataaaaattatatgttgaaaatgtaaatttttacttttatcttacaaataattacacaattttttattacaaagttacttattttagtact 51088914  T
Q  135 ttaaccaat 143  Q
     ||||||||    
T  51088913 ctaaccaat 51088905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 17 - 144
Target Start/End: Complemental strand, 48497536 - 48497414
Alignment:
Q  17 taaggacaatggttaagaaatccattagtagaaactttatcttgaaaatacaagtgtttacttttgtcttagcaatagttaaacaactttttgttttaaa 116  Q
    ||||||||||||||||     |||||| || ||||||| |||||||||||||||| |||| |||| ||||| ||||  ||| || |||||| | |  |||    
T  48497536 taaggacaatggttaa-----ccattaataaaaactttgtcttgaaaatacaagtctttatttttttcttatcaatgattataccacttttcgatacaaa 48497442  T
Q  117 gttacttattttagtactttaaccaatg 144  Q
     ||| |||||||| |||||||| |||||    
T  48497441 cttatttattttaatactttaatcaatg 48497414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 122 - 172
Target Start/End: Original strand, 388467 - 388517
Alignment:
Q  122 ttattttagtactttaaccaatgctacaaggacattcattagcattattct 172  Q
    ||||||||||||||||||||||||  |||||||| | |||| |||||||||    
T  388467 ttattttagtactttaaccaatgccccaaggacaatgattaacattattct 388517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 16 - 142
Target Start/End: Complemental strand, 21865314 - 21865189
Alignment:
Q  16 ttaaggacaatggttaagaaatccattagtagaaactttatcttgaaaatacaagtgtttacttttgtcttagcaatagttaaacaactttttgttttaa 115  Q
    |||||| ||||| ||||| | ||||||| ||| || ||||||||| |||||||| | ||||||||| ||||||||||  ||| || | |||| | |  ||    
T  21865314 ttaaggtcaatgcttaaggattccattaatagtaattttatcttggaaatacaaatttttactttt-tcttagcaatgattacaccatttttcgatgcaa 21865216  T
Q  116 agttacttattttagtactttaaccaa 142  Q
    | ||||||||||||  |||||||||||    
T  21865215 acttacttattttaaaactttaaccaa 21865189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 16 - 142
Target Start/End: Complemental strand, 21921175 - 21921050
Alignment:
Q  16 ttaaggacaatggttaagaaatccattagtagaaactttatcttgaaaatacaagtgtttacttttgtcttagcaatagttaaacaactttttgttttaa 115  Q
    |||||| ||||| ||||| | ||||||| ||| || ||||||||| |||||||| | ||||||||| ||||||||||  ||| || | |||| | |  ||    
T  21921175 ttaaggtcaatgcttaaggattccattaatagtaattttatcttggaaatacaaatttttactttt-tcttagcaatgattacaccatttttcgatgcaa 21921077  T
Q  116 agttacttattttagtactttaaccaa 142  Q
    | ||||||||||||  |||||||||||    
T  21921076 acttacttattttaaaactttaaccaa 21921050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 35 - 93
Target Start/End: Original strand, 32906123 - 32906181
Alignment:
Q  35 aatccattagtagaaactttatcttgaaaatacaagtgtttacttttgtcttagcaata 93  Q
    ||||||||| | |||| ||||||||| ||||| |||| |||| ||||||||||||||||    
T  32906123 aatccattaatggaaagtttatcttgtaaatataagtttttatttttgtcttagcaata 32906181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 39 - 140
Target Start/End: Original strand, 52837957 - 52838058
Alignment:
Q  39 cattagtagaaactttatcttgaaaatacaagtgtttacttttgtcttagcaatagttaaacaactttttgttttaaagttacttattttagtactttaa 138  Q
    ||||| ||||||| |||| ||| ||||||| || ||||||||| ||||| ||||| ||| || | |||| | |  ||| |||||||||||| ||||||||    
T  52837957 cattaatagaaacattattttggaaatacatgtctttacttttttcttaacaataattataccatttttcgatgcaaacttacttattttaatactttaa 52838056  T
Q  139 cc 140  Q
    ||    
T  52838057 cc 52838058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 26 - 93
Target Start/End: Original strand, 37645330 - 37645395
Alignment:
Q  26 tggttaagaaatccattagtagaaactttatcttgaaaatacaagtgtttacttttgtcttagcaata 93  Q
    |||||||| ||||||||| || |||  || ||||||||||||||  ||||| ||||||||||||||||    
T  37645330 tggttaaggaatccattaatataaatattgtcttgaaaatacaa--gtttagttttgtcttagcaata 37645395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 48 - 167
Target Start/End: Original strand, 47519252 - 47519372
Alignment:
Q  48 aaactttatcttgaaaatacaagtgtttacttttg-tcttagcaatagttaaacaactttttgttttaaagttacttattttagtactttaaccaatgct 146  Q
    ||||||| ||||||||||| |||| |||| ||||| | ||| ||||| ||| ||||||||||  |  ||| ||||| ||||||  ||||||||||||||     
T  47519252 aaactttgtcttgaaaatataagtttttaattttgtttttatcaataattacacaactttttaatgcaaacttactaattttaacactttaaccaatgcc 47519351  T
Q  147 acaaggacattcattagcatt 167  Q
     |||| ||| |||||| ||||    
T  47519352 ccaagaacactcattaacatt 47519372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 26 - 93
Target Start/End: Complemental strand, 53650155 - 53650087
Alignment:
Q  26 tggttaagaaatccattagtagaaactttatcttgaaaatacaag-tgtttacttttgtcttagcaata 93  Q
    |||||||| ||| |||||||||||| ||| | ||||||||| ||  | |||||||||||||||||||||    
T  53650155 tggttaaggaattcattagtagaaattttgttttgaaaatataaaatttttacttttgtcttagcaata 53650087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 62; Significance: 9e-27; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 30 - 143
Target Start/End: Original strand, 23131444 - 23131557
Alignment:
Q  30 taagaaatccattagtagaaactttatcttgaaaatacaagtgtttacttttgtcttagcaatagttaaacaactttttgttttaaagttacttatttta 129  Q
    |||| |||||||||||||||||||| ||||||||||| || | ||||||||||| ||||||||| |||  ||||||||| ||  ||| ||||||||||||    
T  23131444 taaggaatccattagtagaaactttgtcttgaaaatataaatttttacttttgttttagcaataattacgcaactttttattgcaaaattacttatttta 23131543  T
Q  130 gtactttaaccaat 143  Q
    ||||||||||||||    
T  23131544 gtactttaaccaat 23131557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 16 - 144
Target Start/End: Complemental strand, 29694430 - 29694302
Alignment:
Q  16 ttaaggacaatggttaagaaatccattagtagaaactttatcttgaaaatacaagtgtttacttttgtcttagcaatagttaaacaactttttgttttaa 115  Q
    |||||||||||||||||| | || |||| ||||||  |||||||| |||||||||| |||| |||||||||| ||||| ||| |  ||||||   |  ||    
T  29694430 ttaaggacaatggttaaggattctattaatagaaatattatcttggaaatacaagtttttatttttgtcttaacaataattacatcacttttcaatgcaa 29694331  T
Q  116 agttacttattttagtactttaaccaatg 144  Q
    | |||||||||||||||||||||||||||    
T  29694330 acttacttattttagtactttaaccaatg 29694302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 17 - 176
Target Start/End: Complemental strand, 2839123 - 2838965
Alignment:
Q  17 taaggacaatggttaagaaatccattagtagaaactttatcttgaaaatacaagtgtttacttttgtcttagcaatagttaaacaactttttgttttaaa 116  Q
    |||||||| |||||||| |||||||||||||||||||| ||||||||||| || | ||||||||||| || ||||||  || || |||||||| |  |||    
T  2839123 taaggacattggttaaggaatccattagtagaaactttgtcttgaaaatataaatttttacttttgt-tttgcaataactacaccactttttgatgcaaa 2839025  T
Q  117 gttacttattttagtactttaaccaatgctacaaggacattcattagcattattctaaaa 176  Q
     ||||| ||||||  |  |||||||||||| ||| | || ||||||||||| | ||||||    
T  2839024 cttactaattttaagaacttaaccaatgctccaaaggcactcattagcattctcctaaaa 2838965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 40 - 144
Target Start/End: Complemental strand, 7592827 - 7592723
Alignment:
Q  40 attagtagaaactttatcttgaaaatacaagtgtttacttttgtcttagcaatagttaaacaactttttgttttaaagttacttattttagtactttaac 139  Q
    |||| |||| ||||| | || ||||||||||| |||||| ||||| |||||||| ||| |  |||||||  |||||| |||||||||||| ||||||||     
T  7592827 attaatagacactttgttttaaaaatacaagtttttactcttgtcctagcaataattacatcactttttaatttaaacttacttattttaatactttaat 7592728  T
Q  140 caatg 144  Q
    |||||    
T  7592727 caatg 7592723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 22 - 145
Target Start/End: Complemental strand, 6454662 - 6454542
Alignment:
Q  22 acaatggttaagaaatccattagtagaaactttatcttgaaaatacaagtgtttacttttgtcttagcaatagttaaacaactttttgttttaaagttac 121  Q
    |||||||||||||| |||||||| ||||||| |  || ||||| |||| | ||||| ||| ||||| ||||| ||| ||||||||  | |  ||| ||||    
T  6454662 acaatggttaagaattccattagaagaaactct--ctagaaaacacaaatctttacctttttcttaacaataattacacaactttc-gatgcaaacttac 6454566  T
Q  122 ttattttagtactttaaccaatgc 145  Q
    ||||||||||| ||||||||||||    
T  6454565 ttattttagtattttaaccaatgc 6454542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 17 - 85
Target Start/End: Complemental strand, 31490476 - 31490408
Alignment:
Q  17 taaggacaatggttaagaaatccattagtagaaactttatcttgaaaatacaagtgtttacttttgtct 85  Q
    |||| |||||| ||||| ||||||||| |||||  || |||||||||||| |||| |||||||||||||    
T  31490476 taagtacaatgattaaggaatccattaatagaattttgatcttgaaaatataagtttttacttttgtct 31490408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 37 - 146
Target Start/End: Original strand, 27673689 - 27673797
Alignment:
Q  37 tccattagtagaaactttatcttgaaaatacaagtgtttacttttgtcttagcaatagttaaacaactttttgttttaaagttacttattttagtacttt 136  Q
    ||||||| ||||||  || ||||| |||||||||| |||| ||||  |||||||||| |||| || || || | | |||| |||||||||||| || |||    
T  27673689 tccattactagaaatgttgtcttggaaatacaagtctttattttttgcttagcaataattaacca-ctcttcgatataaacttacttattttactaattt 27673787  T
Q  137 aaccaatgct 146  Q
    ||||||||||    
T  27673788 aaccaatgct 27673797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 61; Significance: 4e-26; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 17 - 145
Target Start/End: Original strand, 34653276 - 34653403
Alignment:
Q  17 taaggacaatggttaagaaatccattagtagaaactttatcttgaaaatacaagtgtttacttttgtcttagcaatagttaaacaactttttgttttaaa 116  Q
    ||||| ||||||||||| |||| ||||||||||| | | |||||||||  ||||| |||||||||||||| |||||| ||| ||||||||||||  |||     
T  34653276 taagggcaatggttaaggaatctattagtagaaattatgtcttgaaaacgcaagtttttacttttgtctt-gcaataattacacaactttttgtagtaat 34653374  T
Q  117 gttacttattttagtactttaaccaatgc 145  Q
    |||||||||||||||||||||| ||||||    
T  34653375 gttacttattttagtactttaatcaatgc 34653403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 24 - 140
Target Start/End: Complemental strand, 3423861 - 3423745
Alignment:
Q  24 aatggttaagaaatccattagtagaaactttatcttgaaaatacaagtgtttacttttgtcttagcaatagttaaacaactttttgttttaaagttactt 123  Q
    |||||||||||||| |||||||||||| | | | ||  |||| ||||| |||| |||||||||||||||| ||| |||| |||| |||  ||| ||||||    
T  3423861 aatggttaagaaattcattagtagaaattatgttttagaaatgcaagtttttatttttgtcttagcaataattacacaagttttagttacaaaattactt 3423762  T
Q  124 attttagtactttaacc 140  Q
    |||||||||||||||||    
T  3423761 attttagtactttaacc 3423745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 56 - 167
Target Start/End: Complemental strand, 13636326 - 13636215
Alignment:
Q  56 tcttgaaaatacaagtgtttacttttgtcttagcaatagttaaacaactttttgttttaaagttacttattttagtactttaaccaatgctacaaggaca 155  Q
    ||||| |||| || || ||||||||||||||| |||||  || |||||||||||||  |||||||||||||||| |||||||| ||||| |  |||||||    
T  13636326 tcttggaaatgcatgtttttacttttgtcttaacaataactacacaactttttgttacaaagttacttattttaatactttaatcaatgttcaaaggaca 13636227  T
Q  156 ttcattagcatt 167  Q
     |||||| ||||    
T  13636226 ctcattatcatt 13636215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 56 - 167
Target Start/End: Complemental strand, 13736739 - 13736628
Alignment:
Q  56 tcttgaaaatacaagtgtttacttttgtcttagcaatagttaaacaactttttgttttaaagttacttattttagtactttaaccaatgctacaaggaca 155  Q
    ||||| |||| || || ||||||||||||||| |||||  || |||||||||||||  |||||||||||||||| |||||||| ||||| |  |||||||    
T  13736739 tcttggaaatgcatgtttttacttttgtcttaacaataactacacaactttttgttacaaagttacttattttaatactttaatcaatgttcaaaggaca 13736640  T
Q  156 ttcattagcatt 167  Q
     |||||| ||||    
T  13736639 ctcattatcatt 13736628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 21 - 139
Target Start/End: Original strand, 41086814 - 41086932
Alignment:
Q  21 gacaatggttaagaaatccattagtagaaactttatcttgaaaatacaagtgtttacttttgtcttagcaatagttaaacaactttttgttttaaagtta 120  Q
    |||| |||||||  |||| ||| ||||||||||| ||||| |||||||| | ||||||||| |||| | |||| ||| ||||| |||| ||  ||| |||    
T  41086814 gacattggttaaagaatctatttgtagaaactttgtcttggaaatacaaatttttacttttatcttggtaataattacacaacattttattaaaaaatta 41086913  T
Q  121 cttattttagtactttaac 139  Q
    |||||||| ||||||||||    
T  41086914 cttattttggtactttaac 41086932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 24 - 97
Target Start/End: Complemental strand, 22488919 - 22488846
Alignment:
Q  24 aatggttaagaaatccattagtagaaactttatcttgaaaatacaagtgtttacttttgtcttagcaatagtta 97  Q
    |||||||||| | ||||||| |||||||||| | ||| |||||||||| || |||||| |||||||||||||||    
T  22488919 aatggttaaggattccattaatagaaactttgttttggaaatacaagttttcacttttttcttagcaatagtta 22488846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 24 - 129
Target Start/End: Complemental strand, 24334563 - 24334458
Alignment:
Q  24 aatggttaagaaatccattagtagaaactttatcttgaaaatacaagtgtttacttttgtcttagcaatagttaaacaactttttgttttaaagttactt 123  Q
    |||||||||| ||| |||||||||||| ||| | || ||||||||||| ||||||||| |||| | |||| ||| |||||||||| ||  ||| || |||    
T  24334563 aatggttaaggaattcattagtagaaattttgttttaaaaatacaagtttttacttttctcttggtaataattacacaactttttattgcaaaattgctt 24334464  T
Q  124 atttta 129  Q
    ||||||    
T  24334463 atttta 24334458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 24 - 139
Target Start/End: Original strand, 41168623 - 41168739
Alignment:
Q  24 aatggttaagaaatccattagtagaaactttatcttgaaaatacaagtgtttacttttgtcttagc-aatagttaaacaactttttgttttaaagttact 122  Q
    |||||||||| | ||||||| || |||| || ||||| |||||||||| ||||||||||||||||| |||| ||| |  ||||||   |  ||| |||||    
T  41168623 aatggttaaggattccattaataaaaacattgtcttggaaatacaagtctttacttttgtcttagcaaataattacatcacttttcaatgcaaacttact 41168722  T
Q  123 tattttagtactttaac 139  Q
    |||||||||||||||||    
T  41168723 tattttagtactttaac 41168739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 35 - 93
Target Start/End: Complemental strand, 39753204 - 39753144
Alignment:
Q  35 aatccattagta--gaaactttatcttgaaaatacaagtgtttacttttgtcttagcaata 93  Q
    ||||||||||||  |||||||| ||||||||||| |||| ||||||||| |||||||||||    
T  39753204 aatccattagtaaagaaactttttcttgaaaatataagtttttacttttatcttagcaata 39753144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 40 - 128
Target Start/End: Original strand, 44167177 - 44167265
Alignment:
Q  40 attagtagaaactttatcttgaaaatacaagtgtttacttttgtcttagcaatagttaaacaactttttgttttaaagttacttatttt 128  Q
    |||| |||||||||| ||||| |||||||| | ||||||||| ||||||||||  ||| ||||||||| | |  ||| |||||||||||    
T  44167177 attaatagaaactttgtcttggaaatacaaatctttacttttttcttagcaatgattacacaacttttcgatgcaaacttacttatttt 44167265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 78 - 144
Target Start/End: Original strand, 29374562 - 29374628
Alignment:
Q  78 ttttgtcttagcaatagttaaacaactttttgttttaaagttacttattttagtactttaaccaatg 144  Q
    |||| ||||||||||| ||| || |||||| | | |||| |||||||||||| ||||||||||||||    
T  29374562 ttttttcttagcaataattacaccacttttcgatgtaaatttacttattttactactttaaccaatg 29374628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 56 - 177
Target Start/End: Complemental strand, 8488724 - 8488600
Alignment:
Q  56 tcttgaaaatacaagtgtttacttttg--tcttagcaatagttaaacaactttttgttttaaagttactt-attttagtactttaaccaatgctacaagg 152  Q
    ||||| |||||||||| || |||||||  ||||||||||| ||| || ||||||||    ||| |||||| ||||||| ||||||||||||||  |||||    
T  8488724 tcttggaaatacaagttttgacttttgactcttagcaataattataccactttttgaggcaaacttactttattttagaactttaaccaatgccccaagg 8488625  T
Q  153 acattcattagcattattctaaaat 177  Q
     || || |||||||| | |||||||    
T  8488624 gcactcgttagcattttcctaaaat 8488600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 60; Significance: 1e-25; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 16 - 143
Target Start/End: Complemental strand, 3432737 - 3432610
Alignment:
Q  16 ttaaggacaatggttaagaaatccattagtagaaactttatcttgaaaatacaagtgtttacttttgtcttagcaatagttaaacaactttttgttttaa 115  Q
    |||||||||||||||||  | ||||||| |||||||||||||||||||||| |||||||||||||  ||||||||||| ||| |  | |||||| |  ||    
T  3432737 ttaaggacaatggttaatgattccattaatagaaactttatcttgaaaatataagtgtttactttgttcttagcaataattacatcattttttgatgcaa 3432638  T
Q  116 agttacttattttagtactttaaccaat 143  Q
    | ||| ||||||||||||||||||||||    
T  3432637 acttatttattttagtactttaaccaat 3432610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 17 - 145
Target Start/End: Complemental strand, 42005473 - 42005345
Alignment:
Q  17 taaggacaatggttaagaaatccattagtagaaactttatcttgaaaatacaagtgtttacttttgtcttagcaatagttaaacaactttttgttttaaa 116  Q
    ||||| ||||||||||| | ||||||| |||||| ||||| |||||||||||| | ||||||||| ||||| ||||| ||| || | |||| | |  |||    
T  42005473 taagggcaatggttaaggattccattaatagaaattttatattgaaaatacaaatctttacttttttcttaacaataattagaccatttttagatgcaaa 42005374  T
Q  117 gttacttattttagtactttaaccaatgc 145  Q
     ||||||||| ||||||||||||||||||    
T  42005373 cttacttattgtagtactttaaccaatgc 42005345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 37 - 145
Target Start/End: Complemental strand, 54153974 - 54153866
Alignment:
Q  37 tccattagtagaaactttatcttgaaaatacaagtgtttacttttgtcttagcaatagttaaacaactttttgttttaaagttacttattttagtacttt 136  Q
    ||||||| || ||||||| || || |||||||||| ||||||||| ||||| ||||  |||||| |||||| | |  ||| |||||||||||||||||||    
T  54153974 tccattaataaaaactttgtcatggaaatacaagtctttacttttttcttatcaatgattaaaccacttttcgatgcaaacttacttattttagtacttt 54153875  T
Q  137 aaccaatgc 145  Q
    |||||||||    
T  54153874 aaccaatgc 54153866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 24 - 144
Target Start/End: Original strand, 20137571 - 20137688
Alignment:
Q  24 aatggttaagaaatccattagtagaaactttatcttgaaaatacaagtgtttacttttgtcttagcaatagttaaacaactttttgttttaaagttactt 123  Q
    |||| ||||| |||||||| ||||||| ||| ||||| ||||  || | ||||||||||||||  ||||| |||  | | ||||||||  ||||||||||    
T  20137571 aatgattaaggaatccatt-gtagaaattttgtcttggaaatgaaattttttacttttgtcttgacaataatta--ccaatttttgttgcaaagttactt 20137667  T
Q  124 attttagtactttaaccaatg 144  Q
    ||||||||||| |||||||||    
T  20137668 attttagtactctaaccaatg 20137688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 86 - 127
Target Start/End: Original strand, 29398315 - 29398356
Alignment:
Q  86 tagcaatagttaaacaactttttgttttaaagttacttattt 127  Q
    |||||||||||| ||||||||||||| |||||||||||||||    
T  29398315 tagcaatagttacacaactttttgttgtaaagttacttattt 29398356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 17 - 152
Target Start/End: Original strand, 51312879 - 51313014
Alignment:
Q  17 taaggacaatggttaagaaatccattagtagaaactttatcttgaaaatacaagtgtttacttttgtcttagcaatagttaaacaactttttgttttaaa 116  Q
    ||||| |||| |||||| |||||| || || ||| ||||||||||||||| |||  |||| ||||||||| | |||| | | || |||||||| |  |||    
T  51312879 taagggcaatagttaaggaatccactaatataaattttatcttgaaaatataagcttttatttttgtcttggtaataatcataccactttttgatgcaaa 51312978  T
Q  117 gttacttattttagtactttaaccaatgctacaagg 152  Q
     ||||| ||||||  || |||||||||||| |||||    
T  51312979 cttactaattttaacacattaaccaatgcttcaagg 51313014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 17 - 143
Target Start/End: Original strand, 44765262 - 44765388
Alignment:
Q  17 taaggacaatggttaagaaatccattagtagaaactttatcttgaaaatacaagtgtttacttttgtcttagcaatagttaaacaactttttgttttaaa 116  Q
    ||||| || |||||||| | |||| || | |||||||| | ||| |||||||||| ||||||| | ||||||||||| ||| || ||||||   |  |||    
T  44765262 taagggcagtggttaaggattccaataatggaaactttgttttggaaatacaagtctttacttatttcttagcaataattacaccacttttcaatgcaaa 44765361  T
Q  117 gttacttattttagtactttaaccaat 143  Q
     |||||||||||| |||||||| ||||    
T  44765362 cttacttattttaatactttaatcaat 44765388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 37 - 145
Target Start/End: Complemental strand, 47510851 - 47510743
Alignment:
Q  37 tccattagtagaaactttatcttgaaaatacaagtgtttacttttgtcttagcaatagttaaacaactttttgttttaaagttacttattttagtacttt 136  Q
    ||||||| |||||||| | ||||| |||||||| | |||  |||| ||||| ||||| ||| || | |||| | |  ||| |||||||||||||||||||    
T  47510851 tccattaatagaaactatgtcttggaaatacaaatctttgtttttttcttaacaataattacaccatttttcgatacaaacttacttattttagtacttt 47510752  T
Q  137 aaccaatgc 145  Q
    || ||||||    
T  47510751 aatcaatgc 47510743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 58; Significance: 2e-24; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 17 - 138
Target Start/End: Original strand, 23070208 - 23070329
Alignment:
Q  17 taaggacaatggttaagaaatccattagtagaaactttatcttgaaaatacaagtgtttacttttgtcttagcaatagttaaacaactttttgttttaaa 116  Q
    ||||||||||||||||||| ||||||| |||||||||| ||||| |||||||||| ||||||||| ||||||||||  ||| || |||||| | |  |||    
T  23070208 taaggacaatggttaagaattccattaatagaaactttgtcttggaaatacaagtctttacttttttcttagcaatgattacaccacttttcgatgcaaa 23070307  T
Q  117 gttacttattttagtactttaa 138  Q
     |||||||||||| ||||||||    
T  23070308 tttacttattttaatactttaa 23070329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 62 - 142
Target Start/End: Complemental strand, 45411343 - 45411263
Alignment:
Q  62 aaatacaagtgtttacttttgtcttagcaatagttaaacaactttttgttttaaagttacttattttagtactttaaccaa 142  Q
    |||| ||||| ||||||||| ||| | ||||| ||| | ||||||||||| ||||||||||||||||||||||||||||||    
T  45411343 aaatgcaagtttttacttttatctcaacaataattacataactttttgttataaagttacttattttagtactttaaccaa 45411263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 56 - 145
Target Start/End: Original strand, 12139818 - 12139903
Alignment:
Q  56 tcttgaaaatacaagtgtttacttttgtcttagcaatagttaaacaactttttgttttaaagttacttattttagtactttaaccaatgc 145  Q
    |||||||||||||||| ||||  ||||||| ||||||| ||| |||||||||| ||| ||||||||||||||  ||||||||||||||||    
T  12139818 tcttgaaaatacaagttttta--tttgtctcagcaataattacacaactttttatttcaaagttacttattt--gtactttaaccaatgc 12139903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 16 - 93
Target Start/End: Original strand, 3338444 - 3338521
Alignment:
Q  16 ttaaggacaatggttaagaaatccattagtagaaactttatcttgaaaatacaagtgtttacttttgtcttagcaata 93  Q
    |||||||||||| ||||| | ||||||| || |||| || |||||||||||||| | |||||||||||||||||||||    
T  3338444 ttaaggacaatgattaaggattccattaataaaaacattgtcttgaaaatacaaatttttacttttgtcttagcaata 3338521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 17 - 136
Target Start/End: Original strand, 40024167 - 40024286
Alignment:
Q  17 taaggacaatggttaagaaatccattagtagaaactttatcttgaaaatacaagtgtttacttttgtcttagcaatagttaaacaactttttgttttaaa 116  Q
    ||||||||||| ||||| ||| || ||||| ||| | | | ||| |||| ||||| ||||||||| | ||||||||| ||| |||||||||| ||  |||    
T  40024167 taaggacaatgattaaggaatgcaatagtataaattatgttttgcaaatgcaagtttttacttttattttagcaataattacacaactttttattgcaaa 40024266  T
Q  117 gttacttattttagtacttt 136  Q
    ||||||||| ||||||||||    
T  40024267 gttacttatgttagtacttt 40024286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 23 - 93
Target Start/End: Original strand, 40019468 - 40019538
Alignment:
Q  23 caatggttaagaaatccattagtagaaactttatcttgaaaatacaagtgtttacttttgtcttagcaata 93  Q
    ||||||||||| | ||||||| || ||||||| ||||| |||||||||| ||||||||| |||||||||||    
T  40019468 caatggttaaggattccattaataaaaactttgtcttggaaatacaagtctttacttttttcttagcaata 40019538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 62 - 145
Target Start/End: Original strand, 31245263 - 31245346
Alignment:
Q  62 aaatacaagtgtttacttttgtcttagcaatagttaaacaactttttgttttaaagttacttattttagtactttaaccaatgc 145  Q
    |||||||||| || |||||||||||||||||| ||| || | |||| | |  ||| |||||||||||||||||| |||||||||    
T  31245263 aaatacaagtcttcacttttgtcttagcaataattacaccatttttcgatgcaaacttacttattttagtacttcaaccaatgc 31245346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 53 - 143
Target Start/End: Original strand, 7833551 - 7833641
Alignment:
Q  53 ttatcttgaaaatacaagtgtttacttttgtcttagcaatagttaaacaactttttgttttaaagttacttattttagtactttaaccaat 143  Q
    |||||||| |||||||||| ||||||||| ||||||||||| ||| |  | |||||  |  ||| ||| ||||||||||||||||||||||    
T  7833551 ttatcttggaaatacaagtctttacttttttcttagcaataattacatcatttttttatgcaaacttatttattttagtactttaaccaat 7833641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 56 - 144
Target Start/End: Complemental strand, 22680812 - 22680724
Alignment:
Q  56 tcttgaaaatacaagtgtttacttttgtcttagcaatagttaaacaactttttgttttaaagttacttattttagtactttaaccaatg 144  Q
    ||||||||||| |||| |||| |||| ||||||||||  ||| || |||||| | |  ||| |||||||||| ||||||||||||||||    
T  22680812 tcttgaaaataaaagtctttatttttttcttagcaatcattacaccacttttcgatgcaaacttacttatttaagtactttaaccaatg 22680724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 48 - 144
Target Start/End: Original strand, 31860303 - 31860399
Alignment:
Q  48 aaactttatcttgaaaatacaagtgtttacttttgtcttagcaatagttaaacaactttttgttttaaagttacttattttagtactttaaccaatg 144  Q
    ||||||| ||||| |||||||||| ||||||||  ||||| ||||| ||| || | |||| | |  ||| ||||| |||||||||||||||||||||    
T  31860303 aaactttgtcttggaaatacaagtctttactttcttcttatcaataattacaccatttttcgatgcaaacttactcattttagtactttaaccaatg 31860399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 84 - 143
Target Start/End: Complemental strand, 21946212 - 21946153
Alignment:
Q  84 cttagcaatagttaaacaactttttgttttaaagttacttattttagtactttaaccaat 143  Q
    ||||| |||| ||| |||||||||| ||  ||||||||||||||||||| ||||||||||    
T  21946212 cttagtaataattacacaactttttattgcaaagttacttattttagtattttaaccaat 21946153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 17 - 144
Target Start/End: Complemental strand, 25240400 - 25240273
Alignment:
Q  17 taaggacaatggttaagaaatccattagtagaaactttatcttgaaaatacaagtgtttacttttgtcttagcaatagttaaacaactttttgttttaaa 116  Q
    ||||||||||||||||||| || |||| |||||| ||| ||||| ||| |||| | |||| |||| ||||| ||||  ||| || ||| || | |  |||    
T  25240400 taaggacaatggttaagaattctattaatagaaattttgtcttggaaaaacaaatctttatttttttcttatcaatgattacaccactgttcgatgcaaa 25240301  T
Q  117 gttacttattttagtactttaaccaatg 144  Q
     ||||||||||| ||||||||| |||||    
T  25240300 cttacttattttcgtactttaatcaatg 25240273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 54; Significance: 5e-22; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 48 - 145
Target Start/End: Original strand, 8772420 - 8772517
Alignment:
Q  48 aaactttatcttgaaaatacaagtgtttacttttgtcttagcaatagttaaacaactttttgttttaaagttacttattttagtactttaaccaatgc 145  Q
    ||||||| |||||||||||||||| |||||||||||||| |||||| ||| || |||||| | |  ||| ||||||||||||||||||||||||||||    
T  8772420 aaactttgtcttgaaaatacaagtctttacttttgtcttggcaataattacaccacttttcgatgcaaatttacttattttagtactttaaccaatgc 8772517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 17 - 152
Target Start/End: Original strand, 2193257 - 2193392
Alignment:
Q  17 taaggacaatggttaagaaatccattagtagaaactttatcttgaaaatacaagtgtttacttttgtcttagcaatagttaaacaactttttgttttaaa 116  Q
    |||| ||||| |||||| | || |||| |||||||||||||||||||||| || | ||||||||| ||||| ||||  ||| || |||||| | | ||||    
T  2193257 taagaacaatagttaaggattctattaatagaaactttatcttgaaaatataaatctttacttttttcttatcaatgattacaccacttttcgatgtaaa 2193356  T
Q  117 gttacttattttagtactttaaccaatgctacaagg 152  Q
     |||||||||||| ||||||||||||||| ||||||    
T  2193357 tttacttattttaatactttaaccaatgccacaagg 2193392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 16 - 144
Target Start/End: Complemental strand, 46536775 - 46536647
Alignment:
Q  16 ttaaggacaatggttaagaaatccattagtagaaactttatcttgaaaatacaagtgtttacttttgtcttagcaatagttaaacaactttttgttttaa 115  Q
    ||||||||||| ||||| |||| ||| |||| ||| | ||| |||||||||||||| ||||||||||||||| |||||  || |||||||| | ||  ||    
T  46536775 ttaaggacaattgttaaaaaattcatcagtacaaattctattttgaaaatacaagtttttacttttgtcttatcaataactacacaactttgtattgcaa 46536676  T
Q  116 agttacttattttagtactttaaccaatg 144  Q
    | |||||||||||| |||||||| |||||    
T  46536675 aattacttattttaatactttaatcaatg 46536647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 21 - 139
Target Start/End: Original strand, 30264064 - 30264187
Alignment:
Q  21 gacaatggttaagaaatccattagtagaaactttatcttgaaaatacaagtgtttacttttgtcttagcaa-----tagttaaacaactttttgttttaa 115  Q
    |||||||||||||||||  ||||||||||| ||| | ||||||||  |||| ||||||||||||||| |||     || ||| |||| |||||||| |||    
T  30264064 gacaatggttaagaaatttattagtagaaattttgttttgaaaatgtaagtttttacttttgtcttatcaataatttaattacacaattttttgttgtaa 30264163  T
Q  116 agttacttattttagtactttaac 139  Q
    |||||||||||||| || ||||||    
T  30264164 agttacttattttaataatttaac 30264187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 23 - 145
Target Start/End: Complemental strand, 12188753 - 12188631
Alignment:
Q  23 caatggttaagaaatccattagtagaaactttatcttgaaaatacaagtgtttacttttgtcttagcaatagttaaacaactttttgttttaaagttact 122  Q
    |||| |||||| | ||||||| |||||||||| ||||| |||||||| | ||||||||| ||||||||||| ||| || | ||||   |  ||| |||||    
T  12188753 caatcgttaaggattccattaatagaaactttgtcttggaaatacaaatttttacttttttcttagcaataattacaccatttttcaatacaaaattact 12188654  T
Q  123 tattttagtactttaaccaatgc 145  Q
    ||||||||||||||| |||||||    
T  12188653 tattttagtactttatccaatgc 12188631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 17 - 144
Target Start/End: Original strand, 26701517 - 26701644
Alignment:
Q  17 taaggacaatggttaagaaatc-cattagtagaaactttatcttgaaaatacaagtgtttacttttgtcttagcaatagttaaacaactttttgttttaa 115  Q
    ||||| |||||||||| ||||| ||||| |||||||||| |||||||||||||| | ||||||||| ||||| ||||  ||| |  |||||| | |  ||    
T  26701517 taagggcaatggttaa-aaatctcattaatagaaactttctcttgaaaatacaaatctttacttttttcttatcaatcattacatcacttttcgatgcaa 26701615  T
Q  116 agttacttattttagtactttaaccaatg 144  Q
    | |||||||||| ||||||||||||||||    
T  26701616 acttacttatttaagtactttaaccaatg 26701644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 49 - 167
Target Start/End: Complemental strand, 7330636 - 7330518
Alignment:
Q  49 aactttatcttgaaaatacaagtgtttacttttgtcttagcaatagttaaacaactttttgttttaaagttacttattttagtactttaaccaatgctac 148  Q
    ||||||||||||||||||||||| ||| ||||| ||||||||||| ||  |  ||||||   |  |   ||||||||||||||||||||||||||| | |    
T  7330636 aactttatcttgaaaatacaagtatttgcttttttcttagcaataattgcatcacttttcaatgcatgcttacttattttagtactttaaccaatgtttc 7330537  T
Q  149 aaggacattcattagcatt 167  Q
    ||||||| |||||| ||||    
T  7330536 aaggacactcattaacatt 7330518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 22 - 144
Target Start/End: Complemental strand, 29020207 - 29020085
Alignment:
Q  22 acaatggttaagaaatccattagtagaaactttatcttgaaaatacaagtgtttacttttgtcttagcaatagttaaacaactttttgttttaaagttac 121  Q
    |||||| ||||| ||| |||||||||||| ||| ||||  |||||||| | |||||  |    ||||||||| ||| |||||||||| || |||| ||||    
T  29020207 acaatgattaaggaattcattagtagaaattttgtcttagaaatacaaatttttaccatcactttagcaataattacacaactttttattgtaaaattac 29020108  T
Q  122 ttattttagtactttaaccaatg 144  Q
    |||||||| ||||||||||||||    
T  29020107 ttattttaatactttaaccaatg 29020085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 99 - 167
Target Start/End: Original strand, 17969342 - 17969410
Alignment:
Q  99 acaactttttgttttaaagttacttattttagtactttaaccaatgctacaaggacattcattagcatt 167  Q
    |||||||||||||  ||| |||||||||||||||||||||||||||   ||| |||| |||||||||||    
T  17969342 acaactttttgttgcaaaattacttattttagtactttaaccaatgtcccaacgacactcattagcatt 17969410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 16 - 123
Target Start/End: Complemental strand, 9552925 - 9552818
Alignment:
Q  16 ttaaggacaatggttaagaaatccattagtagaaactttatcttgaaaatacaagtgtttacttttgtcttagcaatagttaaacaactttttgttttaa 115  Q
    |||||| ||||| ||||  |||| |||| || ||| || || ||| |||| ||||| ||||||||||||||| ||||| ||| ||| ||||||||| |||    
T  9552925 ttaagggcaatgattaaagaatctattaataaaaatttcattttggaaatgcaagtatttacttttgtcttatcaataattacacacctttttgttgtaa 9552826  T
Q  116 agttactt 123  Q
    ||||||||    
T  9552825 agttactt 9552818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 17 - 144
Target Start/End: Complemental strand, 44603753 - 44603626
Alignment:
Q  17 taaggacaatggttaagaaatccattagtagaaactttatcttgaaaatacaagtgtttacttttgtcttagcaatagttaaacaactttttgttttaaa 116  Q
    ||||| ||||||||||| |  |||||| || ||||||| |||||||| ||||| | |||| |||| ||||||||||  ||| || ||||||||    |||    
T  44603753 taagggcaatggttaaggatcccattaatataaactttgtcttgaaagtacaaatctttatttttttcttagcaatcattacaccactttttgaggcaaa 44603654  T
Q  117 gttacttattttagtactttaaccaatg 144  Q
     |||||||||| |||||||||| |||||    
T  44603653 cttacttatttaagtactttaatcaatg 44603626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 21 - 134
Target Start/End: Complemental strand, 30350846 - 30350733
Alignment:
Q  21 gacaatggttaagaaatccattagtagaaactttatcttgaaaatacaagtgtttacttttgtcttagcaatagttaaacaactttttgttttaaagtta 120  Q
    ||||||||||||| |||| |||||||| || | | ||||| |||| ||||  ||| ||||| ||||||||||  ||| |||| | ||| ||  |||||||    
T  30350846 gacaatggttaaggaatctattagtaggaattatgtcttggaaatgcaagcttttgcttttatcttagcaatgattacacaattgtttattgcaaagtta 30350747  T
Q  121 cttattttagtact 134  Q
    ||||||||||||||    
T  30350746 cttattttagtact 30350733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 45 - 144
Target Start/End: Original strand, 19703787 - 19703887
Alignment:
Q  45 tagaaactttatcttgaaaatacaagtgtttacttttgtctt-agcaatagttaaacaactttttgttttaaagttacttattttagtactttaaccaat 143  Q
    |||||| ||| ||||| |||||||  | ||||||||||| || ||||||||||| || | |||||| |  ||  ||| ||||||||||||||||||||||    
T  19703787 tagaaaatttgtcttgtaaatacatatttttacttttgtttttagcaatagttacaccattttttgatacaagcttatttattttagtactttaaccaat 19703886  T
Q  144 g 144  Q
    |    
T  19703887 g 19703887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 53; Significance: 2e-21; HSPs: 17)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 30 - 138
Target Start/End: Complemental strand, 10418709 - 10418601
Alignment:
Q  30 taagaaatccattagtagaaactttatcttgaaaatacaagtgtttacttttgtcttagcaatagttaaacaactttttgttttaaagttacttatttta 129  Q
    ||||||||| ||||||| ||||||| |||| ||||||||||| |||| |||||| ||| ||||| ||| ||||| |||| ||| ||||||||||||||||    
T  10418709 taagaaatctattagtataaactttgtcttcaaaatacaagtttttatttttgttttaacaataattacacaacattttatttcaaagttacttatttta 10418610  T
Q  130 gtactttaa 138  Q
     ||||||||    
T  10418609 atactttaa 10418601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 17 - 145
Target Start/End: Original strand, 26401996 - 26402124
Alignment:
Q  17 taaggacaatggttaagaaatccattagtagaaactttatcttgaaaatacaagtgtttacttttgtcttagcaatagttaaacaactttttgttttaaa 116  Q
    |||| |||||||||||| |||||||||||||||| ||| | ||| |||| ||||  || |||||||||||| ||||  ||| |||||||||| ||  |||    
T  26401996 taagaacaatggttaaggaatccattagtagaaattttgtattggaaatgcaagctttcacttttgtcttaacaatgattacacaactttttattgaaaa 26402095  T
Q  117 gttacttattttagtactttaaccaatgc 145  Q
     ||||||||||||||||| ||||||||||    
T  26402096 attacttattttagtactctaaccaatgc 26402124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 29 - 144
Target Start/End: Original strand, 7611938 - 7612053
Alignment:
Q  29 ttaagaaatccattagtagaaactttatcttgaaaatacaagtgtttacttttgtcttagcaatagttaaacaactttttgttttaaagttacttatttt 128  Q
    ||||| ||| ||||| |||||||||||||||||||||| ||   ||||||||||| ||||||||| |||||||| ||||| ||   ||||| ||||||||    
T  7611938 ttaaggaattcattaatagaaactttatcttgaaaataaaaaaatttacttttgttttagcaataattaaacaattttttattgcgaagttgcttatttt 7612037  T
Q  129 agtactttaaccaatg 144  Q
    | ||||||||||||||    
T  7612038 aatactttaaccaatg 7612053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 23 - 145
Target Start/End: Original strand, 12487099 - 12487222
Alignment:
Q  23 caatggttaagaaatccattagtagaaactttatcttgaaaatacaagtgtttacttttgtct-tagcaatagttaaacaactttttgttttaaagttac 121  Q
    ||||||||||| |||| ||||||||||| ||| |||||||||||||| | |||||||||||||   | |||| ||| |||||| || ||| |||||||||    
T  12487099 caatggttaaggaatctattagtagaaattttgtcttgaaaatacaaatttttacttttgtctcgggtaataattacacaactcttcgttgtaaagttac 12487198  T
Q  122 ttattttagtactttaaccaatgc 145  Q
    || ||||| |||||||||||||||    
T  12487199 ttgttttaatactttaaccaatgc 12487222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 17 - 143
Target Start/End: Original strand, 30251942 - 30252068
Alignment:
Q  17 taaggacaatggttaagaaatccattagtagaaactttatcttgaaaatacaagtgtttacttttgtcttagcaatagttaaacaactttttgttttaaa 116  Q
    ||||| ||||||||||| | ||||||| |||||| ||| ||||| |||||||||| ||||||||| ||||||||||| ||| || |||||| | |  |||    
T  30251942 taagggcaatggttaaggattccattaatagaaattttgtcttggaaatacaagtctttacttttttcttagcaataattacaccacttttcgatacaaa 30252041  T
Q  117 gttacttattttagtactttaaccaat 143  Q
      || ||||||||||||||||||||||    
T  30252042 tatatttattttagtactttaaccaat 30252068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 17 - 167
Target Start/End: Complemental strand, 33085401 - 33085251
Alignment:
Q  17 taaggacaatggttaagaaatccattagtagaaactttatcttgaaaatacaagtgtttacttttgtcttagcaatagttaaacaactttttgttttaaa 116  Q
    ||||| || |||||||| |||||||||||||||||||| ||||||||||| || | |||||||||||||||||||||  || || ||||||   |  |||    
T  33085401 taagggcattggttaaggaatccattagtagaaactttgtcttgaaaatataaatttttacttttgtcttagcaataactacaccacttttgtatgcaaa 33085302  T
Q  117 gttacttattttagtactttaaccaatgctacaaggacattcattagcatt 167  Q
     || || ||||||  ||||||||||||| |  ||||||| |||||||||||    
T  33085301 cttgctaattttaacactttaaccaatgttctaaggacactcattagcatt 33085251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 21 - 145
Target Start/End: Complemental strand, 42641235 - 42641111
Alignment:
Q  21 gacaatggttaagaaatccattagtagaaactttatcttgaaaatacaagtgtttacttttgtcttagcaatagttaaacaactttttgttttaaagtta 120  Q
    |||||| |||||| | || |||| |||||||||| |||||||||||||||| ||||||||| ||||| ||||  ||| || | |||| | |  ||| |||    
T  42641235 gacaatagttaaggattctattaatagaaactttgtcttgaaaatacaagtctttacttttttcttatcaatgattacaccatttttcgatgcaaactta 42641136  T
Q  121 cttattttagtactttaaccaatgc 145  Q
    |||||||||||||||||||||||||    
T  42641135 cttattttagtactttaaccaatgc 42641111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 17 - 93
Target Start/End: Complemental strand, 35626712 - 35626636
Alignment:
Q  17 taaggacaatggttaagaaatccattagtagaaactttatcttgaaaatacaagtgtttacttttgtcttagcaata 93  Q
    ||||||||||||||||| ||||||||| |||||| ||| | ||||||||| |||| ||||||||||||||| |||||    
T  35626712 taaggacaatggttaaggaatccattaatagaaattttgttttgaaaatataagtttttacttttgtcttaccaata 35626636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 17 - 144
Target Start/End: Complemental strand, 7736425 - 7736298
Alignment:
Q  17 taaggacaatggttaagaaatccattagtagaaactttatcttgaaaatacaagtgtttacttttgtcttagcaatagttaaacaactttttgttttaaa 116  Q
    ||||| ||||||||||  |  |||||| ||||||||||||||||||||||||||| |||| |||| ||||||||||  |||  | ||||||   |  |||    
T  7736425 taagggcaatggttaaagatcccattaatagaaactttatcttgaaaatacaagtctttaattttttcttagcaatcattacgccacttttcaatggaaa 7736326  T
Q  117 gttacttattttagtactttaaccaatg 144  Q
     |||||||||| ||||||||||||||||    
T  7736325 cttacttatttaagtactttaaccaatg 7736298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 16 - 145
Target Start/End: Original strand, 1637964 - 1638093
Alignment:
Q  16 ttaaggacaatggttaagaaatccattagtagaaactttatcttgaaaatacaagtgtttacttttgtcttagcaatagttaaacaactttttgttttaa 115  Q
    |||||| ||||||||||  | || |||| || ||| ||| ||||| |||||||| | ||||||||| ||||||||||| ||| ||||||||||| |  ||    
T  1637964 ttaagggcaatggttaatgattctattaatataaattttgtcttggaaatacaaatttttacttttttcttagcaataattacacaactttttgatgcaa 1638063  T
Q  116 agttacttattttagtactttaaccaatgc 145  Q
    | ||| |||||||||| |||||| ||||||    
T  1638064 acttatttattttagttctttaatcaatgc 1638093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 95 - 176
Target Start/End: Original strand, 8716395 - 8716476
Alignment:
Q  95 ttaaacaactttttgttttaaagttacttattttagtactttaaccaatgctacaaggacattcattagcattattctaaaa 176  Q
    |||||||||||||| || || ||||| ||||||||| ||||||||||||| | |||  ||||||||||||||| | ||||||    
T  8716395 ttaaacaactttttattatacagttatttattttagaactttaaccaatgttccaataacattcattagcattctcctaaaa 8716476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 35 - 143
Target Start/End: Original strand, 14157001 - 14157109
Alignment:
Q  35 aatccattagtagaaactttatcttgaaaatacaagtgtttacttttgtcttagcaatagttaaacaactttttgttttaaagttacttattttagtact 134  Q
    ||||| ||| |||||| ||||||||| |||||||| | ||||||||||||||| ||||| ||| |  |||| ||| |  ||| ||||||||||||  |||    
T  14157001 aatcctttaatagaaattttatcttgtaaatacaaatttttacttttgtcttatcaataattacatcacttattgatgcaaacttacttattttacaact 14157100  T
Q  135 ttaaccaat 143  Q
    |||||||||    
T  14157101 ttaaccaat 14157109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 78 - 145
Target Start/End: Complemental strand, 25731281 - 25731214
Alignment:
Q  78 ttttgtcttagcaatagttaaacaactttttgttttaaagttacttattttagtactttaaccaatgc 145  Q
    |||| ||||||||||| ||| |||||||||   |  ||| ||||||||||||||||||||||||||||    
T  25731281 ttttttcttagcaataattacacaacttttctatgcaaacttacttattttagtactttaaccaatgc 25731214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 118 - 152
Target Start/End: Original strand, 20078356 - 20078390
Alignment:
Q  118 ttacttattttagtactttaaccaatgctacaagg 152  Q
    ||||||||||||||||||||||||||||| |||||    
T  20078356 ttacttattttagtactttaaccaatgctccaagg 20078390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 74 - 152
Target Start/End: Original strand, 34023285 - 34023363
Alignment:
Q  74 ttacttttgtcttagcaatagttaaacaactttttgttttaaagttacttattttagtactttaaccaatgctacaagg 152  Q
    |||||||||||||||||||| ||| || |||||||  |  ||| ||| ||||||||| |||||||||| |||| |||||    
T  34023285 ttacttttgtcttagcaataattataccactttttaatacaaacttaattattttagaactttaaccattgctccaagg 34023363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 44 - 143
Target Start/End: Complemental strand, 35980792 - 35980692
Alignment:
Q  44 gtagaaactttatcttg--aaaatacaagtgtttacttttgtcttagcaatagttaaacaactttttgttttaaagttacttattttagtactttaacca 141  Q
    |||||||||||||||||  ||||||||| | ||||||||||||||  ||||| ||| |||| ||||| ||  ||| ||| |||||||  |||||||||||    
T  35980792 gtagaaactttatcttgaaaaaatacaaatttttacttttgtcttgacaataattacacaa-tttttattgcaaaattatttattttgatactttaacca 35980694  T
Q  142 at 143  Q
    ||    
T  35980693 at 35980692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 26 - 143
Target Start/End: Complemental strand, 40132496 - 40132379
Alignment:
Q  26 tggttaagaaatccattagtagaaactttatcttgaaaatacaagtgtttacttttgtcttagcaatagttaaacaactttttgttttaaagttacttat 125  Q
    ||||||||||||| |||  || ||| ||||| |||||||||||| | |||||||||  |||||  |||| || || | |||||| | |||| |||| |||    
T  40132496 tggttaagaaatctattgataaaaattttattttgaaaatacaaatttttacttttaccttagttataggtagaccattttttgatgtaaatttacatat 40132397  T
Q  126 tttagtactttaaccaat 143  Q
    |||| |||||||| ||||    
T  40132396 tttaatactttaatcaat 40132379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 56 - 145
Target Start/End: Original strand, 246541 - 246630
Alignment:
Q  56 tcttgaaaatacaagtgtttacttttgtcttagcaatagttaaacaactttttgttttaaagttacttattttagtactttaaccaatgc 145  Q
    |||||||||||||||| ||||||||| ||| ||||||| ||| || |||||| | |  ||| |||||||||||||||||||||| |||||    
T  246541 tcttgaaaatacaagtttttacttttttctgagcaataattacaccacttttcgatgcaaacttacttattttagtactttaactaatgc 246630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University