View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17179_low_26 (Length: 294)
Name: NF17179_low_26
Description: NF17179
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17179_low_26 |
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| [»] chr8 (5 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 161; Significance: 7e-86; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 161; E-Value: 7e-86
Query Start/End: Original strand, 101 - 294
Target Start/End: Original strand, 11106008 - 11106201
Alignment:
| Q |
101 |
taatttatttgagcttatctactaacacaattgtttgagagcttatggaaattacttatgacatattcatacattatttgcagcttatannnnnnnaaga |
200 |
Q |
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| T |
11106008 |
taatttatttgagcttatctactaacgcaactgtttgagagcttatggaaattacttatgacatattcatacattatttgcagcttatatttttttaaga |
11106107 |
T |
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| Q |
201 |
gcttatgtgatctgtttttcgcaggattgacttataatcccacaagtgtgatgttcataaatgtaccaagcatatcaaagttgcaatggcatcc |
294 |
Q |
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| T |
11106108 |
gcttatgtgatatgtttttcgcaggattgacttataatcccacaagtgtgatgttcataaatgtaccaagcatatcaaagttgcaatggcatcc |
11106201 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 139; E-Value: 9e-73
Query Start/End: Original strand, 19 - 294
Target Start/End: Original strand, 11592155 - 11592423
Alignment:
| Q |
19 |
tgtgaaggtgtagaactcaacttctctaagggacatggtaattaacattatcttaaagtaaactcgtaggtcctattcgacttaatttatttgagcttat |
118 |
Q |
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| T |
11592155 |
tgtgaaggtgtagaactcaacttctctaagggacatggtaattaacatcaacttaaagtaaactcgtagg-ccgattcgaattattttatttgagcttat |
11592253 |
T |
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| Q |
119 |
ctactaacacaattgttt--gagagcttatggaaattacttatgacatattcatacattatttgcagcttatannnnnnnaagagcttatgtgatctgtt |
216 |
Q |
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| T |
11592254 |
ctactaacacaactgtttgagagagcttaaagaaattagt-------tattcataagttattttcagcttata-atttttaagagctaatgtgatatgtt |
11592345 |
T |
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| Q |
217 |
tttcgcaggattgacttataatcccacaagtgtgatgttcataaatgtaccaagcatatcaaagttgcaatggcatcc |
294 |
Q |
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| T |
11592346 |
tttggcaggattgacgtataatccaacaagtgtgatgttcataaatgtaccaagcatatcaaagttgcaatggcatcc |
11592423 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 18 - 109
Target Start/End: Original strand, 11105678 - 11105769
Alignment:
| Q |
18 |
ttgtgaaggtgtagaactcaacttctctaagggacatggtaattaacattatcttaaagtaaactcgtaggtcctattcgacttaatttatt |
109 |
Q |
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| T |
11105678 |
ttgtgaaggtgtagaactcaacttctctaagggacatggtaattaacattatcttcaagtaaactcgtaggtcctattcgacttaatttatt |
11105769 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 203 - 294
Target Start/End: Original strand, 11119260 - 11119351
Alignment:
| Q |
203 |
ttatgtgatctgtttttcgcaggattgacttataatcccacaagtgtgatgttcataaatgtaccaagcatatcaaagttgcaatggcatcc |
294 |
Q |
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| T |
11119260 |
ttatgtgatatgtttttggcaggattgacgtataatccaacaagtgtgatgttcataaatgtaccaagcatatcaaagttgcaatggcatcc |
11119351 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 27 - 171
Target Start/End: Original strand, 11118863 - 11119009
Alignment:
| Q |
27 |
tgtagaactcaacttctctaagggacatggtaattaacattatcttaaagtaaactcgtaggtcctattcgacttaatttatttgagcttatctactaac |
126 |
Q |
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| T |
11118863 |
tgtagaactcaacttctctaagggacatggtaatttacattatcttaaattagactcttatgatctatttgtcttgatttatttgaacttatctattatc |
11118962 |
T |
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| Q |
127 |
acaattgttt--gagagcttatggaaattacttatgacatattcata |
171 |
Q |
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| T |
11118963 |
ggtacagtttgggagagcttatggagactacttatgacatgttcata |
11119009 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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