View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17179_low_29 (Length: 249)
Name: NF17179_low_29
Description: NF17179
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17179_low_29 |
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Alignment Details
Target: chr6 (Bit Score: 179; Significance: 1e-96; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 21 - 241
Target Start/End: Original strand, 1144826 - 1145045
Alignment:
| Q |
21 |
aatgaagccaaaaccaaagttccaagcaaatttaaaggcaaagttcaaacttttggtttttaaatatgcaaaaaacaaacttcatcaggcaattggaaat |
120 |
Q |
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| T |
1144826 |
aatgaagccaaaaccaaagttccaagcaaatttaaaggcaaagttcaaacttttggtttttaaatatgcaaaaaacaaacttcatcaggcaattggaaat |
1144925 |
T |
|
| Q |
121 |
agcttacaaccaatcacaacaataattctgactagttnnnnnnncaactataatcaccaactggtctacgttaaaggctcttgggattctttttccatca |
220 |
Q |
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| T |
1144926 |
agcttacaaccaatcacaacaataattctgactaatt-aaaaaacaactataatcaccaactggtctacgttaaaggttcttgggattctttttccatca |
1145024 |
T |
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| Q |
221 |
attcagacttctctctctgct |
241 |
Q |
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|||||| ||||||| |||||| |
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| T |
1145025 |
attcagccttctctttctgct |
1145045 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 113; Significance: 2e-57; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 17 - 157
Target Start/End: Complemental strand, 18280263 - 18280123
Alignment:
| Q |
17 |
actaaatgaagccaaaaccaaagttccaagcaaatttaaaggcaaagttcaaacttttggtttttaaatatgcaaaaaacaaacttcatcaggcaattgg |
116 |
Q |
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||||||||||||||||||||||||| ||||||||||||||| ||| ||||| ||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
18280263 |
actaaatgaagccaaaaccaaagtttcaagcaaatttaaagacaatgttcactcttttggtttttaaatatgcaaaaaccaaacttcatcaggcaattgg |
18280164 |
T |
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| Q |
117 |
aaatagcttacaaccaatcacaacaataattctgactagtt |
157 |
Q |
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| T |
18280163 |
aaatagcttacaaccaatcacaacaataattctgattagtt |
18280123 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 17 - 126
Target Start/End: Original strand, 8296482 - 8296591
Alignment:
| Q |
17 |
actaaatgaagccaaaaccaaagttccaagcaaatttaaaggcaaagttcaaacttttggtttttaaatatgcaaaaaacaaacttcatcaggcaattgg |
116 |
Q |
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|||||||||| |||||||||||||| ||||||||||||||| ||||||||| ||||||||||||||||||||||||| |||||||||||||| |||||| |
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| T |
8296482 |
actaaatgaaaccaaaaccaaagtttcaagcaaatttaaagacaaagttcactcttttggtttttaaatatgcaaaaaccaaacttcatcaggaaattgg |
8296581 |
T |
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| Q |
117 |
aaatagctta |
126 |
Q |
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|||||||||| |
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| T |
8296582 |
aaatagctta |
8296591 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 47 - 126
Target Start/End: Original strand, 8300088 - 8300168
Alignment:
| Q |
47 |
caaatttaaaggcaaagttcaaacttttggtttttaaatatgcaaaaaacaaactt-catcaggcaattggaaatagctta |
126 |
Q |
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||||||||||| ||||||||| ||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||| |
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| T |
8300088 |
caaatttaaagacaaagttcactcttttggtttttaaatatgcaaaaaccaaacttccatcaggcaattggaaatagctta |
8300168 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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