View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17179_low_33 (Length: 238)

Name: NF17179_low_33
Description: NF17179
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17179_low_33
NF17179_low_33
[»] chr7 (7 HSPs)
chr7 (16-221)||(22534182-22534387)
chr7 (16-195)||(22525505-22525684)
chr7 (74-120)||(7327775-7327821)
chr7 (74-125)||(20456102-20456153)
chr7 (137-192)||(24391071-24391126)
chr7 (155-189)||(20414584-20414618)
chr7 (156-194)||(46769050-46769088)
[»] scaffold0128 (3 HSPs)
scaffold0128 (71-192)||(8199-8320)
scaffold0128 (74-175)||(25251-25352)
scaffold0128 (71-112)||(3740-3781)
[»] chr5 (1 HSPs)
chr5 (140-192)||(42297807-42297859)
[»] chr4 (2 HSPs)
chr4 (74-120)||(2910627-2910673)
chr4 (74-114)||(11982095-11982135)
[»] chr1 (1 HSPs)
chr1 (137-189)||(39379425-39379477)


Alignment Details
Target: chr7 (Bit Score: 186; Significance: 1e-101; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 16 - 221
Target Start/End: Original strand, 22534182 - 22534387
Alignment:
Q  16 aatatccgatatattaagaactgatttcagttgggatgattgggaatttcatccattcgtgtttggttatgataattcaaccgacacctataaggttgta 115  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  22534182 aatatctgatatattaagaactgatttcagttgggatgattgggaatttcatccgttcgtgtttggttatgataattcaaccgacacctataaggttgta 22534281  T
Q  116 gccttaaattcagaaggtaatgatgtgagagtctttaccttgggtgataatgtttggagaactattaaaagttttcctgatgatattcttccattgagct 215  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || | ||||||||||||||    
T  22534282 gccttaaattcagaaggtaatgatgtgagagtctttaccttgggtgataatgtttggagaactattaaaagttttcctgaggacactcttccattgagct 22534381  T
Q  216 ctaatt 221  Q
    ||||||    
T  22534382 ctaatt 22534387  T

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Target: chr7; HSP #2
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 16 - 195
Target Start/End: Complemental strand, 22525684 - 22525505
Alignment:
Q  16 aatatccgatatattaagaactgatttcagttgggatgattgggaatttcatccattcgtgtttggttatgataattcaaccgacacctataaggttgta 115  Q
    ||||||||||||||| ||||||||||||  ||  |||||||| |||||| ||   || ||||||||||||||||||||||||||||||||||| ||||||    
T  22525684 aatatccgatatattgagaactgatttcgattatgatgattgcgaattttatgagtttgtgtttggttatgataattcaaccgacacctataaagttgta 22525585  T
Q  116 gccttaaattcagaaggtaatgatgtgagagtctttaccttgggtgataatgtttggagaactattaaaagttttcctga 195  Q
    |||||||||||||  |||||||||||||||||| ||||| |||||||||||||||||||||||||||||| |||||||||    
T  22525584 gccttaaattcaggcggtaatgatgtgagagtcattaccatgggtgataatgtttggagaactattaaaacttttcctga 22525505  T

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Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 74 - 120
Target Start/End: Original strand, 7327775 - 7327821
Alignment:
Q  74 gtgtttggttatgataattcaaccgacacctataaggttgtagcctt 120  Q
    |||||| ||||||||||||||||| |||| |||||||||||||||||    
T  7327775 gtgttttgttatgataattcaaccaacacttataaggttgtagcctt 7327821  T

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Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 74 - 125
Target Start/End: Original strand, 20456102 - 20456153
Alignment:
Q  74 gtgtttggttatgataattcaaccgacacctataaggttgtagccttaaatt 125  Q
    |||||| ||| |||||||||||||||||| ||||||||||| ||||| ||||    
T  20456102 gtgttttgttttgataattcaaccgacacatataaggttgtggccttgaatt 20456153  T

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Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 137 - 192
Target Start/End: Original strand, 24391071 - 24391126
Alignment:
Q  137 gatgtgagagtctttaccttgggtgataatgtttggagaactattaaaagttttcc 192  Q
    ||||||||||| ||||  |||||||||||| ||||||||| |||| ||||||||||    
T  24391071 gatgtgagagtttttagtttgggtgataatatttggagaaatattcaaagttttcc 24391126  T

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Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 155 - 189
Target Start/End: Original strand, 20414584 - 20414618
Alignment:
Q  155 ttgggtgataatgtttggagaactattaaaagttt 189  Q
    |||||||||||||||||||||| ||||||||||||    
T  20414584 ttgggtgataatgtttggagaagtattaaaagttt 20414618  T

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Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 156 - 194
Target Start/End: Original strand, 46769050 - 46769088
Alignment:
Q  156 tgggtgataatgtttggagaactattaaaagttttcctg 194  Q
    ||||||||||| |||||||||||||| ||||||||||||    
T  46769050 tgggtgataatatttggagaactattcaaagttttcctg 46769088  T

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Target: scaffold0128 (Bit Score: 54; Significance: 4e-22; HSPs: 3)
Name: scaffold0128
Description:

Target: scaffold0128; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 71 - 192
Target Start/End: Original strand, 8199 - 8320
Alignment:
Q  71 ttcgtgtttggttatgataattcaaccgacacctataaggttgtagccttaaattcagaaggtaatgatgtgagagtctttaccttgggtgataatgttt 170  Q
    ||||||||||||||||||| |||||||||||| ||||| ||||| ||||||| ||||   ||||| ||  ||||||||||||  ||||||||||||||||    
T  8199 ttcgtgtttggttatgatagttcaaccgacacttataaagttgtggccttaagttcaactggtaacgaaatgagagtctttagtttgggtgataatgttt 8298  T
Q  171 ggagaactattaaaagttttcc 192  Q
    |||||  |||| |||| |||||    
T  8299 ggagatatattcaaagatttcc 8320  T

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Target: scaffold0128; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 74 - 175
Target Start/End: Original strand, 25251 - 25352
Alignment:
Q  74 gtgtttggttatgataattcaaccgacacctataaggttgtagccttaaattcagaaggtaatgatgtgagagtctttaccttgggtgataatgtttgga 173  Q
    |||||||||||||| | || ||| ||||| |||||||||||  | |||| ||||   ||||| || |||| ||||||||  |||||||||||||||||||    
T  25251 gtgtttggttatgagagtttaactgacacttataaggttgtgtcattaagttcaactggtaacgaagtgaaagtctttagtttgggtgataatgtttgga 25350  T
Q  174 ga 175  Q
    ||    
T  25351 ga 25352  T

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Target: scaffold0128; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 71 - 112
Target Start/End: Original strand, 3740 - 3781
Alignment:
Q  71 ttcgtgtttggttatgataattcaaccgacacctataaggtt 112  Q
    |||||||||| ||||||||||||||||||||  |||||||||    
T  3740 ttcgtgtttgtttatgataattcaaccgacatttataaggtt 3781  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 140 - 192
Target Start/End: Original strand, 42297807 - 42297859
Alignment:
Q  140 gtgagagtctttaccttgggtgataatgtttggagaactattaaaagttttcc 192  Q
    |||||||||||||  ||||  ||||||||||||||||||||| ||||||||||    
T  42297807 gtgagagtctttagtttggaagataatgtttggagaactattcaaagttttcc 42297859  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 74 - 120
Target Start/End: Original strand, 2910627 - 2910673
Alignment:
Q  74 gtgtttggttatgataattcaaccgacacctataaggttgtagcctt 120  Q
    |||||||||||||||||||||||  |||| ||||||||||| |||||    
T  2910627 gtgtttggttatgataattcaactcacacttataaggttgtggcctt 2910673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 74 - 114
Target Start/End: Complemental strand, 11982135 - 11982095
Alignment:
Q  74 gtgtttggttatgataattcaaccgacacctataaggttgt 114  Q
    ||||||||||||| |||||||| |||||| |||||||||||    
T  11982135 gtgtttggttatgttaattcaagcgacacttataaggttgt 11982095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 137 - 189
Target Start/End: Complemental strand, 39379477 - 39379425
Alignment:
Q  137 gatgtgagagtctttaccttgggtgataatgtttggagaactattaaaagttt 189  Q
    ||||||||||| || |  |||||||||||||||||||||| |||| |||||||    
T  39379477 gatgtgagagttttcagtttgggtgataatgtttggagaaatattgaaagttt 39379425  T

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