View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17179_low_35 (Length: 235)
Name: NF17179_low_35
Description: NF17179
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17179_low_35 |
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Alignment Details
Target: chr8 (Bit Score: 151; Significance: 5e-80; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 65 - 219
Target Start/End: Original strand, 41851207 - 41851361
Alignment:
| Q |
65 |
tgttggtgaggttgaatcatgtatgaattttatgtcaaaattttggacaaatgttgaatgattttgaatttagatgaatgccacaagttttatgtcattt |
164 |
Q |
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| T |
41851207 |
tgttggtgaggttgaatcatgtatgaattttatgtcaaaattttggacaaatgttgaatgattttgaatttagatgaatggcacaagttttatgtcattt |
41851306 |
T |
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| Q |
165 |
tcaatgttgaatgaattttaagtgttcaatgtgtttgagctttgagcatgttatg |
219 |
Q |
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| T |
41851307 |
tcaatgttgaatgaattttaagtgttcaatgtgtttgagctttgagcatgttatg |
41851361 |
T |
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Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 7 - 48
Target Start/End: Original strand, 41851170 - 41851211
Alignment:
| Q |
7 |
gagtgagatgaaatgctggaatgaatagttaattttgtgttg |
48 |
Q |
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| T |
41851170 |
gagtgtgatgaaatgctggaatgaatagttaattttgtgttg |
41851211 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 127 - 200
Target Start/End: Original strand, 49559631 - 49559704
Alignment:
| Q |
127 |
tttgaatttagatgaatgccacaagttttatgtcattttcaatgttgaatgaattttaagtgttcaatgtgttt |
200 |
Q |
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| T |
49559631 |
tttgaatttatttgaatgtcacaagttttatgtcattttgaatgttgaataaattttgagtgttgaatgtgttt |
49559704 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 127 - 198
Target Start/End: Original strand, 6562808 - 6562879
Alignment:
| Q |
127 |
tttgaatttagatgaatgccacaagttttatgtcattttcaatgttgaatgaattttaagtgttcaatgtgt |
198 |
Q |
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| T |
6562808 |
tttgaatttagttgaatgtcacaaattttatatcattttaaatgttcaataaattttgagtgttgaatgtgt |
6562879 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 156 - 199
Target Start/End: Original strand, 33229668 - 33229711
Alignment:
| Q |
156 |
atgtcattttcaatgttgaatgaattttaagtgttcaatgtgtt |
199 |
Q |
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| T |
33229668 |
atgtcattttgaatgttgaatgaattttgagtgttgaatgtgtt |
33229711 |
T |
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