View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17179_low_36 (Length: 234)

Name: NF17179_low_36
Description: NF17179
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17179_low_36
NF17179_low_36
[»] chr3 (11 HSPs)
chr3 (16-216)||(5828000-5828200)
chr3 (20-216)||(5848729-5848925)
chr3 (20-210)||(5503044-5503234)
chr3 (20-181)||(5525881-5526042)
chr3 (16-216)||(5802332-5802532)
chr3 (16-216)||(20343670-20343870)
chr3 (25-181)||(5484842-5484998)
chr3 (20-210)||(5490231-5490421)
chr3 (20-172)||(5854074-5854226)
chr3 (20-210)||(5455054-5455244)
chr3 (25-210)||(5446500-5446682)
[»] chr6 (1 HSPs)
chr6 (25-210)||(25809130-25809312)
[»] chr2 (3 HSPs)
chr2 (23-196)||(34217119-34217292)
chr2 (23-171)||(34194284-34194432)
chr2 (13-171)||(34205719-34205877)


Alignment Details
Target: chr3 (Bit Score: 197; Significance: 1e-107; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 16 - 216
Target Start/End: Complemental strand, 5828200 - 5828000
Alignment:
Q  16 aatattgttaaaccaaagtaagcagccactcccaccatctctgatatcagaatttgcatatgcaatgcaagaacagtttttcaaacacattgtcttacat 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5828200 aatattgttaaaccaaagtaagcagccactcccaccatctctgatatcagaatttgcatatgcaatgcaagaacagtttttcaaacacattgtcttacat 5828101  T
Q  116 tcctcaaggctcaagctcttgtcataccaagatgttgacgtgtctggcaacttcatgcttgtgtacttcaaaaagccatcaccattgaggcaattcaatt 215  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5828100 tcctcaaggctcaagttcttgtcataccaagatgttgacgtgtctggcaacttcatgcttgtgtacttcaaaaagccatcaccattgaggcaattcaatt 5828001  T
Q  216 t 216  Q
    |    
T  5828000 t 5828000  T

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Target: chr3; HSP #2
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 20 - 216
Target Start/End: Complemental strand, 5848925 - 5848729
Alignment:
Q  20 ttgttaaaccaaagtaagcagccactcccaccatctctgatatcagaatttgcatatgcaatgcaagaacagtttttcaaacacattgtcttacattcct 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||| |||||| |||||||||||| |||| ||||||||||||||    
T  5848925 ttgttaaaccaaagtaagcagccactcccaccatctctgatatctaaatttgcatatgcagtgcaagtacagtttttcaagcacagtgtcttacattcct 5848826  T
Q  120 caaggctcaagctcttgtcataccaagatgttgacgtgtctggcaacttcatgcttgtgtacttcaaaaagccatcaccattgaggcaattcaattt 216  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||| || | |||||||||||    
T  5848825 caaggctcaagctcttgtcataccaagatgttgacgtgtctggcaacttcatgcttgtgtacttcagaaagccatccccagtgtgacaattcaattt 5848729  T

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Target: chr3; HSP #3
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 20 - 210
Target Start/End: Original strand, 5503044 - 5503234
Alignment:
Q  20 ttgttaaaccaaagtaagcagccactcccaccatctctgatatcagaatttgcatatgcaatgcaagaacagtttttcaaacacattgtcttacattcct 119  Q
    |||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  5503044 ttgtcaaaccaaagtaagcagccactcccaccatctctgatatctgaatttgcatatgcagtgcaagaacagtttttcaaacacattgtcttacattcct 5503143  T
Q  120 caaggctcaagctcttgtcataccaagatgttgacgtgtctggcaacttcatgcttgtgtacttcaaaaagccatcaccattgaggcaatt 210  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||   ||||| ||||| |||| ||| |||||    
T  5503144 caaggctcaagctcctgtcataccaagatgttgacgtgtctggcaacttcatgtttgtgtacggtaaaaatccatcgccatggagacaatt 5503234  T

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Target: chr3; HSP #4
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 20 - 181
Target Start/End: Original strand, 5525881 - 5526042
Alignment:
Q  20 ttgttaaaccaaagtaagcagccactcccaccatctctgatatcagaatttgcatatgcaatgcaagaacagtttttcaaacacattgtcttacattcct 119  Q
    |||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||| |||||||||| ||||||||||||||||||||||||||||    
T  5525881 ttgttaaaccaaagtaagcagccactcccaccatctctgacatctgaatttgcatatgcagtgcaagaacaatttttcaaacacattgtcttacattcct 5525980  T
Q  120 caaggctcaagctcttgtcataccaagatgttgacgtgtctggcaacttcatgcttgtgtac 181  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  5525981 cgaggctcaagctcttgtcataccaagatgttgacgtgtctggcaacttcatgtttgtgtac 5526042  T

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Target: chr3; HSP #5
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 16 - 216
Target Start/End: Complemental strand, 5802532 - 5802332
Alignment:
Q  16 aatattgttaaaccaaagtaagcagccactcccaccatctctgatatcagaatttgcatatgcaatgcaagaacagtttttcaaacacattgtcttacat 115  Q
    |||||||||||||||||||||||||||||| |||||||| |||||||| ||||||||||||||  |||||||||||||||||||||||||||||||||||    
T  5802532 aatattgttaaaccaaagtaagcagccactaccaccatccctgatatctgaatttgcatatgcggtgcaagaacagtttttcaaacacattgtcttacat 5802433  T
Q  116 tcctcaaggctcaagctcttgtcataccaagatgttgacgtgtctggcaacttcatgcttgtgtacttcaaaaagccatcaccattgaggcaattcaatt 215  Q
    || |||||||| |||||||||| |||  | |||| ||| || ||||| ||||||||| ||||||||||||||||||||||||||||||| ||||||||||    
T  5802432 tcttcaaggctaaagctcttgttataatacgatgatgatgtatctggtaacttcatgtttgtgtacttcaaaaagccatcaccattgagacaattcaatt 5802333  T
Q  216 t 216  Q
    |    
T  5802332 t 5802332  T

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Target: chr3; HSP #6
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 16 - 216
Target Start/End: Original strand, 20343670 - 20343870
Alignment:
Q  16 aatattgttaaaccaaagtaagcagccactcccaccatctctgatatcagaatttgcatatgcaatgcaagaacagtttttcaaacacattgtcttacat 115  Q
    |||||||| ||||||||||||||| |||||||||||||||||||||||  |||||||||||||| |||||  ||| |||||||||||| | |||||||||    
T  20343670 aatattgtcaaaccaaagtaagcaaccactcccaccatctctgatatctaaatttgcatatgcagtgcaattacaatttttcaaacacgtcgtcttacat 20343769  T
Q  116 tcctcaaggctcaagctcttgtcataccaagatgttgacgtgtctggcaacttcatgcttgtgtacttcaaaaagccatcaccattgaggcaattcaatt 215  Q
    |||| |||||||||||||||||||||||| ||||  ||||||||||||||||||||| |||||||||||||||| ||||| |||||||| ||||||||||    
T  20343770 tcctgaaggctcaagctcttgtcataccatgatgccgacgtgtctggcaacttcatgtttgtgtacttcaaaaatccatctccattgagacaattcaatt 20343869  T
Q  216 t 216  Q
    |    
T  20343870 t 20343870  T

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Target: chr3; HSP #7
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 25 - 181
Target Start/End: Original strand, 5484842 - 5484998
Alignment:
Q  25 aaaccaaagtaagcagccactcccaccatctctgatatcagaatttgcatatgcaatgcaagaacagtttttcaaacacattgtcttacattcctcaagg 124  Q
    |||||||||||||||||||||||||||||||||||||||  |||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||    
T  5484842 aaaccaaagtaagcagccactcccaccatctctgatatctaaatttgcatatgcagtgcaagaacagtttttcaaacacattgtcttacattccttaagg 5484941  T
Q  125 ctcaagctcttgtcataccaagatgttgacgtgtctggcaacttcatgcttgtgtac 181  Q
    ||||||||||||||| |||| |||| |||||| ||||||||||||||| ||||||||    
T  5484942 ctcaagctcttgtcaaaccacgatgctgacgtatctggcaacttcatgtttgtgtac 5484998  T

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Target: chr3; HSP #8
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 20 - 210
Target Start/End: Original strand, 5490231 - 5490421
Alignment:
Q  20 ttgttaaaccaaagtaagcagccactcccaccatctctgatatcagaatttgcatatgcaatgcaagaacagtttttcaaacacattgtcttacattcct 119  Q
    |||||||||||||||| ||||||||||||||||||| ||||||| ||||||||||||||| |||||| ||||||||||||||||||||||||||||||||    
T  5490231 ttgttaaaccaaagtatgcagccactcccaccatctttgatatctgaatttgcatatgcagtgcaagtacagtttttcaaacacattgtcttacattcct 5490330  T
Q  120 caaggctcaagctcttgtcataccaagatgttgacgtgtctggcaacttcatgcttgtgtacttcaaaaagccatcaccattgaggcaatt 210  Q
    |||||||||||||||||| |||  | |||| ||| || ||||||||||||||| ||||||||   ||||| ||||| |||| ||| |||||    
T  5490331 caaggctcaagctcttgttataatacgatgatgatgtatctggcaacttcatgtttgtgtacggtaaaaatccatcgccatggagacaatt 5490421  T

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Target: chr3; HSP #9
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 20 - 172
Target Start/End: Complemental strand, 5854226 - 5854074
Alignment:
Q  20 ttgttaaaccaaagtaagcagccactcccaccatctctgatatcagaatttgcatatgcaatgcaagaacagtttttcaaacacattgtcttacattcct 119  Q
    |||| ||||||||||||||||||||| ||| ||| |||||||||  |||||||||||||| |||||||||||||||||||||||| |||| |||||||||    
T  5854226 ttgtcaaaccaaagtaagcagccacttccaacatatctgatatctaaatttgcatatgcagtgcaagaacagtttttcaaacacactgtcatacattcct 5854127  T
Q  120 caaggctcaagctcttgtcataccaagatgttgacgtgtctggcaacttcatg 172  Q
    |||||||||||||||||||| |||| |||| |||||||||||| |||||||||    
T  5854126 caaggctcaagctcttgtcaaaccacgatgctgacgtgtctggtaacttcatg 5854074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 20 - 210
Target Start/End: Original strand, 5455054 - 5455244
Alignment:
Q  20 ttgttaaaccaaagtaagcagccactcccaccatctctgatatcagaatttgcatatgcaatgcaagaacagtttttcaaacacattgtcttacattcct 119  Q
    |||| ||||||||||| ||||||||||||| |||||||||||||  || ||||||||||| |||||| ||||||||||||||||||||||||||||||||    
T  5455054 ttgtgaaaccaaagtatgcagccactcccatcatctctgatatctaaagttgcatatgcattgcaagtacagtttttcaaacacattgtcttacattcct 5455153  T
Q  120 caaggctcaagctcttgtcataccaagatgttgacgtgtctggcaacttcatgcttgtgtacttcaaaaagccatcaccattgaggcaatt 210  Q
    ||||||| ||| | |||||| |||| |||| |||||| ||||||||||||||| ||||||||   ||||| ||||| |||| ||| |||||    
T  5455154 caaggcttaaggttttgtcaaaccacgatgctgacgtatctggcaacttcatgtttgtgtacggtaaaaatccatctccatggagacaatt 5455244  T

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Target: chr3; HSP #11
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 25 - 210
Target Start/End: Original strand, 5446500 - 5446682
Alignment:
Q  25 aaaccaaagtaagcagccactcccaccatctctgatatcagaatttgcatatgcaatgcaagaacagtttttcaaacacattgtcttacattcctcaagg 124  Q
    |||||| ||||||||||||||   ||||| |||||||||  || |||||||||||   ||||||||||||||||||||||||||||||||||||||||||    
T  5446500 aaaccagagtaagcagccact---accatatctgatatctaaagttgcatatgcagaacaagaacagtttttcaaacacattgtcttacattcctcaagg 5446596  T
Q  125 ctcaagctcttgtcataccaagatgttgacgtgtctggcaacttcatgcttgtgtacttcaaaaagccatcaccattgaggcaatt 210  Q
    |||||| |||||| |||||| |||| ||| || ||||| ||||||||| ||||||||   ||||| ||||| |||| ||| |||||    
T  5446597 ctcaagatcttgttataccatgatgatgatgtatctggtaacttcatgtttgtgtacggtaaaaatccatctccatggagacaatt 5446682  T

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Target: chr6 (Bit Score: 80; Significance: 1e-37; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 25 - 210
Target Start/End: Complemental strand, 25809312 - 25809130
Alignment:
Q  25 aaaccaaagtaagcagccactcccaccatctctgatatcagaatttgcatatgcaatgcaagaacagtttttcaaacacattgtcttacattcctcaagg 124  Q
    |||||| ||||||||||||||   ||||| |||||||||  || |||||||||||   ||||||||||||||||||||||||||||||||||||||||||    
T  25809312 aaaccagagtaagcagccact---accatatctgatatctaaagttgcatatgcagaacaagaacagtttttcaaacacattgtcttacattcctcaagg 25809216  T
Q  125 ctcaagctcttgtcataccaagatgttgacgtgtctggcaacttcatgcttgtgtacttcaaaaagccatcaccattgaggcaatt 210  Q
    |||||| |||||| |||||| |||| ||| || ||||| ||||||||| ||||||||   ||||| ||||| |||| ||| |||||    
T  25809215 ctcaagatcttgttataccatgatgatgatgtatctggtaacttcatgtttgtgtacggtaaaaatccatctccatggagacaatt 25809130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 54; Significance: 4e-22; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 23 - 196
Target Start/End: Complemental strand, 34217292 - 34217119
Alignment:
Q  23 ttaaaccaaagtaagcagccactcccaccatctctgatatcagaatttgcatatgcaatgcaagaacagtttttcaaacacattgtcttacattcctcaa 122  Q
    ||||||||||| ||||||||||| ||||||||||||| |||  |||||||||||||  | |||||||||||| | | ||| | |  || |||||| || |    
T  34217292 ttaaaccaaagcaagcagccacttccaccatctctgacatctaaatttgcatatgctgtacaagaacagtttctgatacagaatcgctcacattcttcga 34217193  T
Q  123 ggctcaagctcttgtcataccaagatgttgacgtgtctggcaacttcatgcttgtgtacttcaaaaagccatca 196  Q
    || ||| |||||| | | |||||||| |||| ||||||||||||||||| ||  | | ||||||||||||||||    
T  34217192 ggttcatgctcttattaaaccaagattttgatgtgtctggcaacttcattctcatatgcttcaaaaagccatca 34217119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 23 - 171
Target Start/End: Original strand, 34194284 - 34194432
Alignment:
Q  23 ttaaaccaaagtaagcagccactcccaccatctctgatatcagaatttgcatatgcaatgcaagaacagtttttcaaacacattgtcttacattcctcaa 122  Q
    ||||||||||| ||||||||||| ||||||||||||| |||  |||||||||||||  | |||||||||||| | | ||| | |  || |||||| || |    
T  34194284 ttaaaccaaagcaagcagccacttccaccatctctgacatctaaatttgcatatgctgtacaagaacagtttctgatacagaatcgctcacattcttcga 34194383  T
Q  123 ggctcaagctcttgtcataccaagatgttgacgtgtctggcaacttcat 171  Q
    || ||| |||||| | | |||||||| |||| || ||||||||||||||    
T  34194384 ggttcatgctcttattaaaccaagattttgatgtatctggcaacttcat 34194432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 13 - 171
Target Start/End: Complemental strand, 34205877 - 34205719
Alignment:
Q  13 aagaatattgttaaaccaaagtaagcagccactcccaccatctctgatatcagaatttgcatatgcaatgcaagaacagtttttcaaacacattgtctta 112  Q
    |||||| || ||||||||||||| ||| ||||| ||||||||||||| |||  || ||||||||||  |||||  |||||||   | |||   | ||| |    
T  34205877 aagaatgttattaaaccaaagtatgcaaccacttccaccatctctgacatctaaacttgcatatgctgtgcaattacagtttcctagacaggatttctca 34205778  T
Q  113 cattcctcaaggctcaagctcttgtcataccaagatgttgacgtgtctggcaacttcat 171  Q
    ||||| ||||||||||  ||||| | | |||||||| |||| || || |||||||||||    
T  34205777 cattcttcaaggctcatactcttattaaaccaagattttgatgtatcaggcaacttcat 34205719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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