View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17179_low_7 (Length: 529)

Name: NF17179_low_7
Description: NF17179
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17179_low_7
NF17179_low_7
[»] chr1 (5 HSPs)
chr1 (17-522)||(9803366-9803871)
chr1 (27-234)||(9828499-9828703)
chr1 (363-464)||(37738420-37738521)
chr1 (154-234)||(9813710-9813790)
chr1 (182-267)||(9824163-9824248)
[»] scaffold0432 (1 HSPs)
scaffold0432 (17-186)||(7033-7199)
[»] chr7 (3 HSPs)
chr7 (372-486)||(19814274-19814388)
chr7 (363-476)||(18476614-18476727)
chr7 (363-464)||(3003923-3004024)
[»] chr2 (1 HSPs)
chr2 (363-464)||(23681221-23681322)
[»] chr5 (2 HSPs)
chr5 (363-465)||(36732278-36732380)
chr5 (406-476)||(23885000-23885073)


Alignment Details
Target: chr1 (Bit Score: 486; Significance: 0; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 486; E-Value: 0
Query Start/End: Original strand, 17 - 522
Target Start/End: Complemental strand, 9803871 - 9803366
Alignment:
Q  17 aggatgtaacggtgatgtagactctgatttgaataactcgcatgatttacaatatcataatagcaaagattctgattcgtgcaatgtatatgatgaggac 116  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9803871 aggatgtaatggtgatgtagactctgatttgaataactcgcatgatttacaatatcataatagcaaagattctgattcgtgcaatgtatatgatgaggac 9803772  T
Q  117 atgaactttggcaagatattatcggaaattcagaggaaaaagaagcacaaaattaagtgggaattggaggttgagatgcttgcataatttgggaaggatc 216  Q
    |||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9803771 atgaactttggcaagatattctcggaaattctgaggaaaaagaagcacaaaattaagtgggaattggaggttgagatgcttgcataatttgggaaggatc 9803672  T
Q  217 ctgtgttatgtatgaaggttgtttgcgctatttatcaacaacaaacttctggggaacaggtgatcaagggaacatttttccataacgagcgtggatttaa 316  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  9803671 ctgtgttatgtatgaaggttgtttgcgctatttatcgacaacaaacttctggggaacaggtgatcaagggaacatttttccgtaacgagcgtggatttaa 9803572  T
Q  317 caagcatgatgctctcaggtaggaataaaaaatagaattagattcatctagagagatattcatctctagaaatgttatatttcatgaccatatacttcct 416  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9803571 caagcatgatgctctcaggtaggaataaaaaatagaattagattcatctagagagatattcatctctagaaatgttatatttcatgaccatatacttcct 9803472  T
Q  417 tatccttcttcttctgtgaagaatttggaatattttccattttcttcatctcagtcttctacttcatcatttgtctcccttgaaccatctcccatttctt 516  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9803471 tatccttcttcttctgtgaagaatttggaatattttccattttcttcatctcagtcttctacttcatcatttgtctcccttgaaccatctcccatttctt 9803372  T
Q  517 catctc 522  Q
    ||||||    
T  9803371 catctc 9803366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 27 - 234
Target Start/End: Complemental strand, 9828703 - 9828499
Alignment:
Q  27 ggtgatgtagactctgatttgaataactcgcatgatttacaatatcataatagcaaagattctgattcgtgcaatgtatatgatgaggacatgaactttg 126  Q
    |||||||| |||||||||||||||||||  || ||||||||| ||||||   |||| |||||||||||| |  ||| || ||| |||| ||| |||||      
T  9828703 ggtgatgtcgactctgatttgaataacttacaagatttacaagatcata---gcaaggattctgattcgagtgatgcatctgacgagggcattaacttaa 9828607  T
Q  127 gcaagatattatcggaaattcagaggaaaaagaagcacaaaattaagtgggaattggaggttgagatgcttgcataatttgggaaggatcctgtgttatg 226  Q
    | |||||||  ||  ||||||||||||||||||||||||||||||||||||||| ||||||||| |||  |||  | || || |||||||  ||||||||    
T  9828606 gtaagatatattccaaaattcagaggaaaaagaagcacaaaattaagtgggaatcggaggttgatatgtgtgctgacttcggaaaggatcaagtgttatg 9828507  T
Q  227 tatgaagg 234  Q
    ||||||||    
T  9828506 tatgaagg 9828499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 363 - 464
Target Start/End: Complemental strand, 37738521 - 37738420
Alignment:
Q  363 tctagagagatattcatctctagaaatgttatatttcatgaccatatacttccttatccttcttcttctgtgaagaatttggaatattttccattttctt 462  Q
    |||||||| || || |||||||||||||| || |||||||| ||||| |||||||||||| |||| ||||  |||||||||||||||||||| |||||||    
T  37738521 tctagagaaatctttatctctagaaatgtaatttttcatgatcatattcttccttatcctccttcatctgaaaagaatttggaatattttcctttttctt 37738422  T
Q  463 ca 464  Q
    ||    
T  37738421 ca 37738420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 154 - 234
Target Start/End: Complemental strand, 9813790 - 9813710
Alignment:
Q  154 aaaagaagcacaaaattaagtgggaattggaggttgagatgcttgcataatttgggaaggatcctgtgttatgtatgaagg 234  Q
    |||||||||| |||||||||||||||| ||||||||| |||| |||| | || || |||||||||||||||||||||||||    
T  9813790 aaaagaagcataaaattaagtgggaatcggaggttgaaatgcgtgcagacttcggaaaggatcctgtgttatgtatgaagg 9813710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 182 - 267
Target Start/End: Complemental strand, 9824248 - 9824163
Alignment:
Q  182 ggaggttgagatgcttgcataatttgggaaggatcctgtgttatgtatgaaggttgtttgcgctatttatcaacaacaaacttctg 267  Q
    |||||||||||||| |||| | || || ||||||||||||| ||||||||||| ||| || | | ||| || ||| ||||||||||    
T  9824248 ggaggttgagatgcatgcagacttcggaaaggatcctgtgtaatgtatgaaggctgtatgtgttctttttcgacagcaaacttctg 9824163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0432 (Bit Score: 76; Significance: 7e-35; HSPs: 1)
Name: scaffold0432
Description:

Target: scaffold0432; HSP #1
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 17 - 186
Target Start/End: Complemental strand, 7199 - 7033
Alignment:
Q  17 aggatgtaacggtgatgtagactctgatttgaataactcgcatgatttacaatatcataatagcaaagattctgattcgtgcaatgtatatgatgaggac 116  Q
    |||| ||||||||||||| ||||||||||| ||| ||||||||||||||||| |||||    |||| |||||| |||||  |||||||| ||||||||||    
T  7199 aggacgtaacggtgatgtggactctgatttaaatgactcgcatgatttacaagatcatg---gcaaggattctaattcgcacaatgtatctgatgaggac 7103  T
Q  117 atgaactttggcaagatattatcggaaattcagaggaaaaagaagcacaaaattaagtgggaattggagg 186  Q
    || |||||||| |||| ||||||  ||||||||||||||| ||||||||||||||| |||| | ||||||    
T  7102 attaactttggtaagaaattatctaaaattcagaggaaaaggaagcacaaaattaattggggagtggagg 7033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 71; Significance: 6e-32; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 372 - 486
Target Start/End: Complemental strand, 19814388 - 19814274
Alignment:
Q  372 atattcatctctagaaatgttatatttcatgaccatatacttccttatccttcttcttctgtgaagaatttggaatattttccattttcttcatctcagt 471  Q
    |||||||| |||| ||||||| | || ||||| ||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  19814388 atattcatttctaaaaatgttgttttccatgatcatatacttccttgtccttcttcttttgtgaagaatttggaatattttccattttcttcatctcagt 19814289  T
Q  472 cttctacttcatcat 486  Q
      ||| |||||||||    
T  19814288 tatctccttcatcat 19814274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 363 - 476
Target Start/End: Original strand, 18476614 - 18476727
Alignment:
Q  363 tctagagagatattcatctctagaaatgttatatttcatgaccatatacttccttatccttcttcttctgtgaagaatttggaatattttccattttctt 462  Q
    |||||||| |||||||||| ||||||||| || |||||||| ||||| |||||||||||| |||||||  |||||||||||||||| ||||||||||||     
T  18476614 tctagagaaatattcatctatagaaatgtcatctttcatgatcatattcttccttatcctacttcttcaatgaagaatttggaataatttccattttctc 18476713  T
Q  463 catctcagtcttct 476  Q
    ||||||| ||||||    
T  18476714 catctcaatcttct 18476727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 363 - 464
Target Start/End: Original strand, 3003923 - 3004024
Alignment:
Q  363 tctagagagatattcatctctagaaatgttatatttcatgaccatatacttccttatccttcttcttctgtgaagaatttggaatattttccattttctt 462  Q
    |||||||| || || |||||||||||||| || |||||||| ||||| |||||||||||| |||| ||||  |||||||||||||||||||| |||||||    
T  3003923 tctagagaaatctttatctctagaaatgtaatttttcatgatcatattcttccttatcctccttcatctgaaaagaatttggaatattttcctttttctt 3004022  T
Q  463 ca 464  Q
    ||    
T  3004023 ca 3004024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 363 - 464
Target Start/End: Original strand, 23681221 - 23681322
Alignment:
Q  363 tctagagagatattcatctctagaaatgttatatttcatgaccatatacttccttatccttcttcttctgtgaagaatttggaatattttccattttctt 462  Q
    |||||||| || || |||||||||||| | || |||||||| ||||| |||||||||||| |||| ||||  |||||||||||||||||||| |||||||    
T  23681221 tctagagaaatctttatctctagaaatataatttttcatgatcatattcttccttatcctccttcatctgacaagaatttggaatattttcctttttctt 23681320  T
Q  463 ca 464  Q
    ||    
T  23681321 ca 23681322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 47; Significance: 1e-17; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 363 - 465
Target Start/End: Complemental strand, 36732380 - 36732278
Alignment:
Q  363 tctagagagatattcatctctagaaatgttatatttcatgaccatatacttccttatccttcttcttctgtgaagaatttggaatattttccattttctt 462  Q
    |||||||| || || || ||||||||||| || |||||||| ||||| |||||||||||| |||| |||   |||||||||||||||||||| |||||||    
T  36732380 tctagagaaatctttatatctagaaatgtaatttttcatgatcatattcttccttatcctccttcatcttaaaagaatttggaatattttcctttttctt 36732281  T
Q  463 cat 465  Q
    |||    
T  36732280 cat 36732278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 406 - 476
Target Start/End: Complemental strand, 23885073 - 23885000
Alignment:
Q  406 atatacttccttatccttcttcttctgtgaagaat---ttggaatattttccattttcttcatctcagtcttct 476  Q
    |||| ||||||||||||||||| |||| |||||||   ||||||||||||||||||||||||  ||||||||||    
T  23885073 atattcttccttatccttcttcatctgagaagaataatttggaatattttccattttcttcacttcagtcttct 23885000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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