View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17179_low_8 (Length: 496)

Name: NF17179_low_8
Description: NF17179
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17179_low_8
NF17179_low_8
[»] chr2 (1 HSPs)
chr2 (16-488)||(42960709-42961181)
[»] chr5 (1 HSPs)
chr5 (16-169)||(35607889-35608042)
[»] chr8 (3 HSPs)
chr8 (251-481)||(5503529-5503759)
chr8 (26-90)||(11791979-11792043)
chr8 (16-78)||(29858345-29858407)
[»] chr6 (2 HSPs)
chr6 (16-80)||(7712364-7712428)
chr6 (17-79)||(10890479-10890538)
[»] chr7 (1 HSPs)
chr7 (21-80)||(37702076-37702135)
[»] chr4 (1 HSPs)
chr4 (21-80)||(56081265-56081324)
[»] chr1 (1 HSPs)
chr1 (34-89)||(2443403-2443458)
[»] chr3 (2 HSPs)
chr3 (16-89)||(13873370-13873442)
chr3 (26-79)||(32783461-32783514)


Alignment Details
Target: chr2 (Bit Score: 465; Significance: 0; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 465; E-Value: 0
Query Start/End: Original strand, 16 - 488
Target Start/End: Original strand, 42960709 - 42961181
Alignment:
Q  16 atttgaactatgttaaccatctaatttgttgtcgaaatttaatgacaaatttttgtgtcaaaataacaaaactcaaattaggtgatgagtgaagacatac 115  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  42960709 atttgaactatgttaaccatctaatttgttgtcgaaatttaatgacaaatttgtgtgtcaaaataacaaaactcaaattaggtgatgagtgaagacatac 42960808  T
Q  116 ctcagctgatagcaaaccatggtggcaatgaatgctatcattggtctgtccaaatccacagctagcttcaatatacacacccttattggtaataccaact 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42960809 ctcagctgatagcaaaccatggtggcaatgaatgctatcattggtctgtccaaatccacagctagcttcaatatacacacccttattggtaataccaact 42960908  T
Q  216 gtttctatcaatgattgtttaactgatttcttaagaggaacaaaaattgtgttcattggattatcagccatacccttcccaacaaatctgttgtcaagta 315  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42960909 gtttctatcaatgattgtttaactgatttcttaagaggaacaaaaattgtgttcattggattatcagccatacccttcccaacaaatctgttgtcaagta 42961008  T
Q  316 ccacagggattttcaagttctcaagttctgcttttgggccaattccactgagtaatagcatttgaggagttccaattgccccactagacacaatcacttc 415  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42961009 ccacagggattttcaagttctcaagttctgcttttgggccaattccactgagtaatagcatttgaggagttccaattgccccactagacacaatcacttc 42961108  T
Q  416 actctccctatcatttcctagtattgccttatgctgtttcccattttcatccttgaaaatcaccccctttgct 488  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  42961109 actctccctatcatttcctagtattgccttatgctgtttcccattttcatccttgaaaatcacccccattgct 42961181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 102; Significance: 2e-50; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 16 - 169
Target Start/End: Complemental strand, 35608042 - 35607889
Alignment:
Q  16 atttgaactatgttaaccatctaatttgttgtcgaaatttaatgacaaatttttgtgtcaaaataacaaaactcaaattaggtgatgagtgaagacatac 115  Q
    |||||||||||||||||||||||||||||| | ||||||||||| ||| ||| ||||| ||||| | | ||||||||||||||||||||||||||||||     
T  35608042 atttgaactatgttaaccatctaatttgttctagaaatttaatgtcaattttgtgtgtgaaaattaaacaactcaaattaggtgatgagtgaagacatat 35607943  T
Q  116 ctcagctgatagcaaaccatggtggcaatgaatgctatcattggtctgtccaaa 169  Q
    ||||||||| | |||||||||||||||||||||||| |||||||||||||||||    
T  35607942 ctcagctgacaacaaaccatggtggcaatgaatgctgtcattggtctgtccaaa 35607889  T

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Target: chr8 (Bit Score: 83; Significance: 4e-39; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 251 - 481
Target Start/End: Complemental strand, 5503759 - 5503529
Alignment:
Q  251 aggaacaaaaattgtgttcattggattatcagccatacccttcccaacaaatctgttgtcaagtaccacagggattttcaagttctcaagttctgctttt 350  Q
    ||||||||||| ||||||||| ||||||||   ||| ||||||||||||||    |||| ||| ||||| | ||| |||||||||| ||||||  ||||     
T  5503759 aggaacaaaaactgtgttcataggattatctatcattcccttcccaacaaaaggattgttaaggaccactgagatgttcaagttctgaagttcatcttta 5503660  T
Q  351 gggccaattccactgagtaatagcatttgaggagttccaattgccccactagacacaatcacttcactctccctatcatttcctagtattgccttatgct 450  Q
    || ||||||||||| || ||||||||||||||||  |||||||||||||||||||  ||||||||||| | | |||||||||| |   |||||| ||| |    
T  5503659 ggaccaattccacttagcaatagcatttgaggagacccaattgccccactagacaatatcacttcactttgcatatcatttcccaaccttgcctcatgtt 5503560  T
Q  451 gtttcccattttcatccttgaaaatcacccc 481  Q
    |||||||||||||||| |||||||| |||||    
T  5503559 gtttcccattttcatcattgaaaataacccc 5503529  T

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Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 26 - 90
Target Start/End: Complemental strand, 11792043 - 11791979
Alignment:
Q  26 tgttaaccatctaatttgttgtcgaaatttaatgacaaatttttgtgtcaaaataacaaaactca 90  Q
    |||||||| ||||||||||||||||||||| ||| |||||| || ||||||||| ||| ||||||    
T  11792043 tgttaaccgtctaatttgttgtcgaaatttgatgtcaaattcttatgtcaaaatcacacaactca 11791979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 16 - 78
Target Start/End: Complemental strand, 29858407 - 29858345
Alignment:
Q  16 atttgaactatgttaaccatctaatttgttgtcgaaatttaatgacaaatttttgtgtcaaaa 78  Q
    ||||||| |||||||||| ||||| |||  |||||||||| ||| ||||||||||| ||||||    
T  29858407 atttgaattatgttaaccttctaaattgacgtcgaaatttgatgtcaaatttttgtttcaaaa 29858345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 16 - 80
Target Start/End: Original strand, 7712364 - 7712428
Alignment:
Q  16 atttgaactatgttaaccatctaatttgttgtcgaaatttaatgacaaatttttgtgtcaaaata 80  Q
    ||||||||||||||||||||||||  ||||||||||||||  |  ||||||  ||||||||||||    
T  7712364 atttgaactatgttaaccatctaaactgttgtcgaaatttgttatcaaattcgtgtgtcaaaata 7712428  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 17 - 79
Target Start/End: Original strand, 10890479 - 10890538
Alignment:
Q  17 tttgaactatgttaaccatctaatttgttgtcgaaatttaatgacaaatttttgtgtcaaaat 79  Q
    |||||||| ||||||||||||| ||||||||||||| |||||| ||||  |||||||||||||    
T  10890479 tttgaactctgttaaccatctagtttgttgtcgaaa-ttaatgtcaaa--tttgtgtcaaaat 10890538  T

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Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 21 - 80
Target Start/End: Original strand, 37702076 - 37702135
Alignment:
Q  21 aactatgttaaccatctaatttgttgtcgaaatttaatgacaaatttttgtgtcaaaata 80  Q
    |||||| | ||| |||||||||||||| ||||||| ||||||||||| ||| ||||||||    
T  37702076 aactatatcaactatctaatttgttgttgaaatttgatgacaaatttgtgtttcaaaata 37702135  T

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Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 21 - 80
Target Start/End: Original strand, 56081265 - 56081324
Alignment:
Q  21 aactatgttaaccatctaatttgttgtcgaaatttaatgacaaatttttgtgtcaaaata 80  Q
    |||| |||||| ||||||| |||||||| || ||| ||| ||||||||||||||||||||    
T  56081265 aactgtgttaatcatctaaattgttgtcaaatttttatgtcaaatttttgtgtcaaaata 56081324  T

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Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 34 - 89
Target Start/End: Complemental strand, 2443458 - 2443403
Alignment:
Q  34 atctaatttgttgtcgaaatttaatgacaaatttttgtgtcaaaataacaaaactc 89  Q
    |||||||||| ||||||||||| |||   ||||||||||||||||||||| |||||    
T  2443458 atctaatttggtgtcgaaatttgatgttgaatttttgtgtcaaaataacacaactc 2443403  T

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Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 16 - 89
Target Start/End: Complemental strand, 13873442 - 13873370
Alignment:
Q  16 atttgaactatgttaaccatctaatttgttgtcgaaatttaatgacaaatttttgtgtcaaaataacaaaactc 89  Q
    |||| |||||||||||| || || ||| |||||||| ||||||| | ||||||||||||||| ||||| |||||    
T  13873442 atttaaactatgttaacaatttagttttttgtcgaattttaatgtc-aatttttgtgtcaaagtaacacaactc 13873370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 26 - 79
Target Start/End: Original strand, 32783461 - 32783514
Alignment:
Q  26 tgttaaccatctaatttgttgtcgaaatttaatgacaaatttttgtgtcaaaat 79  Q
    |||||||| ||||||||||||| ||||||| | | ||||||| |||||||||||    
T  32783461 tgttaaccgtctaatttgttgttgaaatttgaagtcaaatttgtgtgtcaaaat 32783514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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