View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17179_low_9 (Length: 481)
Name: NF17179_low_9
Description: NF17179
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17179_low_9 |
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Alignment Details
Target: chr1 (Bit Score: 408; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 408; E-Value: 0
Query Start/End: Original strand, 11 - 463
Target Start/End: Complemental strand, 40635773 - 40635307
Alignment:
| Q |
11 |
cagagacactaacatccaagtttaaattcattattttctgagagatgtctctcatcctctttcggatctcctccagctcttttccaactttgtatttatc |
110 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40635773 |
cagagacactaacatccaagtttaaattcattattttctgagagatgtctctcatcctctttcggatctcctccagctcttttccaactttgtatttatc |
40635674 |
T |
|
| Q |
111 |
ataccaatgcaaaacaccccacctcctcctcttgactgattttatgacgaacgtttctatcacattctttgcatctagagcaacatccttcaacttctcc |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40635673 |
ataccaatgcaaaacaccccacctcctcctcttgactgatttgatgacgaacgtttctatcacattctttgcatctagagcaacatccttcaacttctcc |
40635574 |
T |
|
| Q |
211 |
gcccattctttcaactcttgttcctgttctccatccccgcgctgctcaacctgttctaacaatccccgcattgacctcagctctttctcaatccactcta |
310 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
40635573 |
gcccattctttcaactcttgttcctgttctccatccccgcgctgctcaacctgttctaacaatccccgcattgacctcagctctttctcaatccattcta |
40635474 |
T |
|
| Q |
311 |
cgtgcctcgctgtagcccccaaaactgcatactcttcaaccaggaattttgcaaccactgataccacaacatcgactgcaacgccagcagccatgtgaa- |
409 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40635473 |
cgtgcctcgctgtagcccccaaaactgcatactcttcaaccaggaattttgcaaccactgataccacaacatcgactgcaacgccagcagccatgtgaag |
40635374 |
T |
|
| Q |
410 |
-------------ctctgcttaattaatttgtttatcttttggttttggttttccaaatgattaagg |
463 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
40635373 |
tcttctctgctagctctgcttaattaatttgtttatcttttggttttcgttttccaaatgattaagg |
40635307 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 13 - 377
Target Start/End: Original strand, 40629364 - 40629728
Alignment:
| Q |
13 |
gagacactaacatccaagtttaaattcattattttctgagagatgtctctcatcctctttcggatctcctccagctcttttccaactttgtatttatcat |
112 |
Q |
| |
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|||| |||||||||||| ||||| |||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||| |||||||| |||| |
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| T |
40629364 |
gagatactaacatccaaatttaagttcattattttctgagagatatctctcatcctctttcggatcttctccagctcttttccaaccttgtatttgtcat |
40629463 |
T |
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| Q |
113 |
accaatgcaaaacaccccacctcctcctcttgactgattttatgacgaacgtttctatcacattctttgcatctagagcaacatccttcaacttctccgc |
212 |
Q |
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||||||||||||| ||||||||||||||||| ||||||||||| || ||||| |||||||| | ||||||||| | ||||||||| ||||||||||| || |
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| T |
40629464 |
accaatgcaaaactccccacctcctcctcttcactgattttatcacaaacgtatctatcacgtcctttgcatccaaagcaacatctttcaacttctctgc |
40629563 |
T |
|
| Q |
213 |
ccattctttcaactcttgttcctgttctccatccccgcgctgctcaacctgttctaacaatccccgcattgacctcagctctttctcaatccactctacg |
312 |
Q |
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||||||| |||| ||||||||||||| || |||||||| || |||| ||| |||||||||||| ||||||||||||||||||||||||||| |||||| |
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| T |
40629564 |
ccattctcgcaacgcttgttcctgttcgccttccccgcgttgttcaatctgctctaacaatcccatcattgacctcagctctttctcaatccattctacg |
40629663 |
T |
|
| Q |
313 |
tgcctcgctgtagcccccaaaactgcatactcttcaaccaggaattttgcaaccactgataccac |
377 |
Q |
| |
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|| ||||||| | ||||||| || ||||||||||||| ||||| ||| |||||| |||||||||| |
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| T |
40629664 |
tgtctcgctgcatcccccaacaccgcatactcttcaatcaggattttagcaacccctgataccac |
40629728 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 47 - 317
Target Start/End: Complemental strand, 40656319 - 40656049
Alignment:
| Q |
47 |
tctgagagatgtctctcatcctctttcggatctcctccagctcttttccaactttgtatttatcataccaatgcaaaacaccccacctcctcctcttgac |
146 |
Q |
| |
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||||||||||||||||||||||| | ||||||| || || |||||| ||||| |||| ||| ||| ||||| || ||| ||||| |||||||| || || |
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| T |
40656319 |
tctgagagatgtctctcatcctcctgcggatcttctgcaactctttcccaaccttgtgtttgtcaatccaatacagaactccccatctcctccttttcac |
40656220 |
T |
|
| Q |
147 |
tgattttatgacgaacgtttctatcacattctttgcatctagagcaacatccttcaacttctccgcccattctttcaactcttgttcctgttctccatcc |
246 |
Q |
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||||| || || |||||||||||||||| || |||||| |||||| |||||||||||||| |||| || || ||||||||||| |||||||| | | |
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| T |
40656219 |
cgatttgatcacaaacgtttctatcacatcctctgcatcaccagcaacttccttcaacttctcttcccactcattaaactcttgttcttgttctccgtac |
40656120 |
T |
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| Q |
247 |
ccgcgctgctcaacctgttctaacaatccccgcattgacctcagctctttctcaatccactctacgtgcct |
317 |
Q |
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| |||||| | ||||||| ||||||||| ||||||||||||||||| | |||||||| ||||||||||| |
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| T |
40656119 |
gcacgctgcccggcctgttccaacaatccctgcattgacctcagctctctttcaatccattctacgtgcct |
40656049 |
T |
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