View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1717R-Insertion-10 (Length: 770)
Name: NF1717R-Insertion-10
Description: NF1717R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1717R-Insertion-10 |
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Alignment Details
Target: chr7 (Bit Score: 537; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 537; E-Value: 0
Query Start/End: Original strand, 8 - 621
Target Start/End: Original strand, 44039089 - 44039695
Alignment:
| Q |
8 |
agttcacataaccaatgcatgttttagtagtgggttagagaaaatccaaataagataaa-ggaactaactgcttcaattctctccgttattgatgaatag |
106 |
Q |
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| T |
44039089 |
agttcacataaccaatgcatgttttagtagtgggttagagaaaatacaaataagataaaaggaactaactgcttcaattctctccgttattgatgaatag |
44039188 |
T |
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| Q |
107 |
attctct---acaaaagtttagacttgaaaattactttagttcacttttgacgtgttttggatcgtttcttatttgagtgtgtttctgtgtgcattacac |
203 |
Q |
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| T |
44039189 |
attctcttctacaaaagtttagacttgaaaattactttagttcacttttgacgtgttttggatcgtttcttatttgagtgtgtttctgtgtgcattacac |
44039288 |
T |
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| Q |
204 |
ttacacagattcttaggtggctggatatgggacgttaacacatggacgtaccccatgatacatacaaacacacgcttagcaagttgataacaaaaaccaa |
303 |
Q |
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| T |
44039289 |
ttgcacagattcttaggtggctggatatgggacgttaacacatggacgtaccccatgatacatacaaacacacgcttagcaagttgataacaaaaaccaa |
44039388 |
T |
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| Q |
304 |
aacttagtatctgtcactgttaaattgtaccacaatggaaaataaataataatcaaattcaaagcttaaatccagttttcattcctctattttgtgttat |
403 |
Q |
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| T |
44039389 |
aacttagtttctgtcactgttaaat----------tggaaaataaataataatcaaattcaaagcttaaatccagttttcattcctctattttgtgttat |
44039478 |
T |
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| Q |
404 |
tcacgattttagttcagttcacctatttccaaatcaacaggttttggtccataccatttttcaaaatgttaaacactttttctacatgcttgaattatga |
503 |
Q |
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| T |
44039479 |
tcacgattttagttcagttcacctatttccaaatcaacaggttttggtccataccatttttcaaaatgtt-aacactttttctacatgcttgaattatga |
44039577 |
T |
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| Q |
504 |
ggttgaaattcatttccatatcatcttgtcacataaatattttgcttgccgcatcataaaaaatcagtcccaaatgtagagtggagaaaatgtccagacc |
603 |
Q |
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| T |
44039578 |
ggttgaaattcatttccatatcatcttgccacataaatattttgcttgccgcatcataaaaaatcagtcccaaatgtagagtggagaaaatgtccagacc |
44039677 |
T |
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| Q |
604 |
ttttgtaaactggaagac |
621 |
Q |
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| T |
44039678 |
ttttgtaaactggaagac |
44039695 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 724 - 770
Target Start/End: Original strand, 44039788 - 44039834
Alignment:
| Q |
724 |
taattgaagattacctcattctgcacatacaaccaaattccctgacc |
770 |
Q |
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| T |
44039788 |
taattgaagattacctcattctgcacatacaaccaaattccctgacc |
44039834 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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