View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1717R-Insertion-12 (Length: 974)
Name: NF1717R-Insertion-12
Description: NF1717R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1717R-Insertion-12 |
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Alignment Details
Target: chr1 (Bit Score: 338; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 272 - 629
Target Start/End: Complemental strand, 41735655 - 41735298
Alignment:
| Q |
272 |
cgacataaataccactaattcgatccaattttcataatcaaaccattcatcatagattcatagctttcatttcatcccttcacttgtttcttctttattt |
371 |
Q |
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| T |
41735655 |
cgacataaataccactaattcgatccaattttcataatcaaaccattcatcatagattcatagctttcatttcatctcttcacttgtttcttctttattt |
41735556 |
T |
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| Q |
372 |
cgttcttgatggcttaagtgatactcaaagataaattattttcttcatgtggtattcaaggataaattagttttttcatggtcactaattttcgtttcta |
471 |
Q |
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| T |
41735555 |
cgttcttgatggcttaagtgatactcaaagataaattattttcttcatgtggtattcaaggataaattagttttttcatggtcactaattttcgtttcta |
41735456 |
T |
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| Q |
472 |
gtcgaaatcaaaatagaagtcattgtcaatagcataactagaaagttattctattggtaaattctcttttgggctgagcttccaccgaaaagtcggctga |
571 |
Q |
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| T |
41735455 |
gtcgaaatcaaaatagaagccattgtcaatagcataactagaaagttattctattggtaaattctcttttgggttgagcttccaccgaaaagtcggctga |
41735356 |
T |
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| Q |
572 |
taatggctacaaggtgagtttctgcaatgtgttttcaatcaaattagtgatcgacctt |
629 |
Q |
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| T |
41735355 |
taatggctacaaggtgaatttctgcaatgtgttttcaatcaaattagtggtcgacctt |
41735298 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 682 - 974
Target Start/End: Complemental strand, 41735301 - 41735008
Alignment:
| Q |
682 |
ccttagccgactccttgaaattgaataccaatgtgacgatctataccgaaagtgtacactaaacaatgtaacaacaatagttcaatatatttaaatgacc |
781 |
Q |
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| T |
41735301 |
ccttagccgactccttgaaattgaataccaatgtgacgatctataccgaaagtgtacactaaacaatgtaacaacaatagttcaatatatttaaatgacc |
41735202 |
T |
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| Q |
782 |
gatttacaatggttctcgacatcaatttaattgcgaaaatgtcttttatcttgtaattcccatttttcactagtgatgggcgatagtcatatattcttca |
881 |
Q |
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| T |
41735201 |
gatttacaatggttctcgacatcaatttaattgcgaaaatgtcttttatcttgtaattcccattttgcactagtgatgggcgatagtcatatattcttca |
41735102 |
T |
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| Q |
882 |
caccaattcaatatatagttgggccta---atcagattggtaatctaccattatgccaaccttggtagagtatttatacacttttaccattcatct |
974 |
Q |
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| T |
41735101 |
caccaattcaatatatagtt-ggcctaatgatcagattggtaatctacca-tatgccaaccttggtagagtatttatacacttttaccatccatct |
41735008 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 198; E-Value: 1e-107
Query Start/End: Original strand, 10 - 252
Target Start/End: Complemental strand, 41735884 - 41735642
Alignment:
| Q |
10 |
tcccttctctcatactcaacaataatgtcttaaccggcttaaacaaactattttaagatgattttaaagttctaattggcttaaacaattcatagttatc |
109 |
Q |
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| T |
41735884 |
tcccttctctcatactcaacaataatgtcttaaccggcttaaacaaactattttaagatgattttaaacttctaattggcttaaacaattcatagttatc |
41735785 |
T |
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| Q |
110 |
taatgcataacattagtttgatttggatgataactcgtattgataaataaaattgacctacaataattatgtatgtgagnnnnnnnactcagtaactcaa |
209 |
Q |
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| T |
41735784 |
taatgcataacattagtttgatttggatgataactcgtattgataaataaaattgacctacaataattttgtatgttagtttttttacttagtaactcaa |
41735685 |
T |
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| Q |
210 |
tcaacttttcaccattcactcgtgtttaacgacataaatacca |
252 |
Q |
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| T |
41735684 |
tcaacttttcaccattctctcatgtttaacgacataaatacca |
41735642 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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