View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1717R-Insertion-3 (Length: 170)
Name: NF1717R-Insertion-3
Description: NF1717R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1717R-Insertion-3 |
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| [»] chr3 (2 HSPs) |
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| [»] chr4 (1 HSPs) |
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| [»] chr2 (1 HSPs) |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 162; Significance: 9e-87; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 162; E-Value: 9e-87
Query Start/End: Original strand, 9 - 170
Target Start/End: Original strand, 1403342 - 1403503
Alignment:
| Q |
9 |
ctcttctagaggagtaaatccaaacataaaacaattatatcttacttggtgttgggactcctgttataacagctctgacatgtataagcttgaagatact |
108 |
Q |
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| T |
1403342 |
ctcttctagaggagtaaatccaaacataaaacaattatatcttacttggtgttgggactcctgttataacagctctgacatgtataagcttgaagatact |
1403441 |
T |
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| Q |
109 |
tatcccttcatgaacaaatttatcaagtgcccattgtacaacatatttgcttttcttgttac |
170 |
Q |
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| T |
1403442 |
tatcccttcatgaacaaatttatcaagtgcccattgtacaacatatttgcttttcttgttac |
1403503 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 45; E-Value: 6e-17
Query Start/End: Original strand, 86 - 170
Target Start/End: Original strand, 1410813 - 1410897
Alignment:
| Q |
86 |
acatgtataagcttgaagatacttatcccttcatgaacaaatttatcaagtgcccattgtacaacatatttgcttttcttgttac |
170 |
Q |
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| T |
1410813 |
acatgtatgagcttgaagataatcattccctctggaacaaacttgttaagtgcccattgtacaacatatttgcttttcttgttac |
1410897 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 42; Significance: 0.000000000000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000004
Query Start/End: Original strand, 85 - 170
Target Start/End: Original strand, 14245697 - 14245782
Alignment:
| Q |
85 |
gacatgtataagcttgaagatacttatcccttcatgaacaaatttatcaagtgcccattgtacaacatatttgcttttcttgttac |
170 |
Q |
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| T |
14245697 |
gacatgtatgagcttgaagataatcattacctctggaacaaacttgttaagtgcccattgtacaacatatttgcttttcttgttac |
14245782 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 42; Significance: 0.000000000000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000004
Query Start/End: Original strand, 85 - 170
Target Start/End: Original strand, 6356267 - 6356352
Alignment:
| Q |
85 |
gacatgtataagcttgaagatacttatcccttcatgaacaaatttatcaagtgcccattgtacaacatatttgcttttcttgttac |
170 |
Q |
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| T |
6356267 |
gacatgtatgagcttgaagataatcattacctctggaacaaacttgttaagtgcccattgtacaacatatttgcttttcttgttac |
6356352 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 86 - 170
Target Start/End: Original strand, 4489429 - 4489513
Alignment:
| Q |
86 |
acatgtataagcttgaagatacttatcccttcatgaacaaatttatcaagtgcccattgtacaacatatttgcttttcttgttac |
170 |
Q |
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| T |
4489429 |
acatgtatgagcttgaagataatcattccctttggaacaaacttgtcaagtgcccattgtagaacatatttgcttttcttgttac |
4489513 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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