View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1717R-Insertion-4 (Length: 297)

Name: NF1717R-Insertion-4
Description: NF1717R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1717R-Insertion-4
NF1717R-Insertion-4
[»] chr4 (1 HSPs)
chr4 (9-297)||(32875223-32875511)


Alignment Details
Target: chr4 (Bit Score: 261; Significance: 1e-145; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 9 - 297
Target Start/End: Original strand, 32875223 - 32875511
Alignment:
Q  9 agaggagttgcattggaaggtgagaaaggaagaacggtcggccttactccacctgctgtcgaggcaatatcagagagttttggggagtgggttatcaatg 108  Q
    |||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  32875223 agaggagttgcattggaaggcgagaaaggaagaacggtcgaccttactccacctgctgttgaggcaatatcagagagttttggggagtgggttatcaatg 32875322  T
Q  109 gtttagagaaggaaaaaggatatcctgttgagaatgtgagtgtgtctcttggacgggaccctcgagttacagggtcgaaattgagcgttgcagtgtttgc 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  32875323 gtttagagaaggaaaaaggatatcctgttgagaatgtgagtgtgtctcttggacgtgaccctcgagttacagggtcgaaattgagcgttgcagtgtttgc 32875422  T
Q  209 cggtctttctcgtgctggctgtatggtgttcgatatgggactagctaccacgcctgcttgtttcatgagcacattgttgcctccatttg 297  Q
    ||||||| |||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  32875423 cggtcttgctcgtgctggttgtatggtgttcgatatgggactagctaccacgcccgcttgtttcatgagcacattgttgcctccatttg 32875511  T

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