View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1717R-Insertion-5 (Length: 382)

Name: NF1717R-Insertion-5
Description: NF1717R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1717R-Insertion-5
NF1717R-Insertion-5
[»] chr2 (1 HSPs)
chr2 (9-382)||(41110232-41110596)


Alignment Details
Target: chr2 (Bit Score: 316; Significance: 1e-178; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 9 - 382
Target Start/End: Complemental strand, 41110596 - 41110232
Alignment:
Q  9 atcttctgagtttaatttggtacaacaatttaaaaacctcaactatattccattggcactggtcctatacaaacatttactctttaagcctacctacact 108  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    |||    
T  41110596 atcttctgagtttaatttggtacaacaatttaaaaacctcaactatattccattggcactggtcctatacaaacatttactctttaagcctac----act 41110501  T
Q  109 agtgaatgtatgcatggaataatgaggcatgagcagactagactaagtcatcatccaatgtccaaaacaagtagtttgtttgaagaaaaagaatctcacg 208  Q
    ||||||||||||||||||||||||||||||||||||||||     |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41110500 agtgaatgtatgcatggaataatgaggcatgagcagacta-----agtcatcatccaatgtccaaaacaagtagtttgtttgaagaaaaagaatctcacg 41110406  T
Q  209 gaagggcagcttaattgccatacagccagccctatcgaaatatctagaaccaaagtatttataagtaannnnnnnaaaataccgtattttttccttcttt 308  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||    
T  41110405 gaagggcagcttaattgccatacagccagccctatcgaaatatctagaaccaaagtatttataagtaatttttttaaaataccgtattttttccttcttt 41110306  T
Q  309 ctgaaatacggtattattttgtacgctaaaatacagtactctttaacaacacatcatcgttagttagattggac 382  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41110305 ctgaaatacggtattattttgtacgctaaaatacagtactctttaacaacacatcatcgttagttagattggac 41110232  T

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