View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1717R-Insertion-6 (Length: 441)
Name: NF1717R-Insertion-6
Description: NF1717R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1717R-Insertion-6 |
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Alignment Details
Target: chr3 (Bit Score: 154; Significance: 2e-81; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 154; E-Value: 2e-81
Query Start/End: Original strand, 9 - 185
Target Start/End: Original strand, 26450573 - 26450752
Alignment:
| Q |
9 |
ggggagaaagatggtgcttgtttgtttgtgcaagaggttttgagacgtgggattgcttgtaatgaggatgatcctgaagggcataagggtggaccaactg |
108 |
Q |
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| T |
26450573 |
ggggagaaagatggtgcttgtttgtttgtgcaagaggttttgagacgtgggattgcttgtaatgaggatgatcctgatgggcataagggtggaccaactg |
26450672 |
T |
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| Q |
109 |
gatatcttgcttggaagatgatggtaagatttccataattga---ctaagttttttgttatttggttggagaattagttc |
185 |
Q |
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| T |
26450673 |
gatatcttgcttggaagatgatggtaagactttcataattgatatctaagttttttgttatttggttggagaattagttc |
26450752 |
T |
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Target: chr3; HSP #2
Raw Score: 149; E-Value: 2e-78
Query Start/End: Original strand, 250 - 438
Target Start/End: Original strand, 26450817 - 26451004
Alignment:
| Q |
250 |
tcatttggtttccttcactttgcatgtgtttggttctgcggtgccaaagttgattatactataatttgttttgattaaaagttagtttaacataaggtca |
349 |
Q |
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| T |
26450817 |
tcatttggtttccttcactttgcatgtgtttggttctgcggtgccaaagttgaatatactataattggttttgattaaaagttagtttaccataacg-ca |
26450915 |
T |
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| Q |
350 |
tttatgtatggataatttatgagaaaactgttctttatcaattcattgcaatcggggaaccaaacacgggcatcgatgtcttgttaatt |
438 |
Q |
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| T |
26450916 |
tttatgtatggataatttatgagaaaagtgttctttatcaattcattgcaatcgcggaaccaaacacggtcatcgatgttttgttaatt |
26451004 |
T |
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