View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1717R-Insertion-8 (Length: 591)

Name: NF1717R-Insertion-8
Description: NF1717R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1717R-Insertion-8
NF1717R-Insertion-8
[»] chr8 (20 HSPs)
chr8 (9-511)||(7616292-7616795)
chr8 (512-591)||(7616837-7616914)
chr8 (526-575)||(29198479-29198528)
chr8 (25-73)||(14926902-14926950)
chr8 (26-69)||(27465457-27465500)
chr8 (514-565)||(44462183-44462234)
chr8 (514-565)||(44469716-44469767)
chr8 (537-581)||(3508056-3508100)
chr8 (25-73)||(4560604-4560652)
chr8 (543-578)||(10441210-10441245)
chr8 (537-584)||(34201057-34201104)
chr8 (30-73)||(39881646-39881689)
chr8 (522-584)||(12606825-12606887)
chr8 (521-575)||(12985402-12985456)
chr8 (518-584)||(31236569-31236635)
chr8 (537-575)||(37225754-37225792)
chr8 (519-575)||(3025561-3025617)
chr8 (25-73)||(3112225-3112273)
chr8 (25-73)||(7714344-7714392)
chr8 (539-575)||(40063961-40063997)
[»] chr2 (16 HSPs)
chr2 (512-588)||(18570969-18571045)
chr2 (521-584)||(37497121-37497184)
chr2 (527-573)||(45000847-45000893)
chr2 (516-591)||(43585995-43586070)
chr2 (536-580)||(10250731-10250775)
chr2 (528-586)||(16630794-16630852)
chr2 (527-565)||(37402085-37402123)
chr2 (539-584)||(10535772-10535817)
chr2 (537-590)||(19613624-19613677)
chr2 (538-575)||(31026705-31026742)
chr2 (543-584)||(40681983-40682024)
chr2 (32-72)||(14844908-14844948)
chr2 (25-73)||(16785280-16785328)
chr2 (559-591)||(19608397-19608429)
chr2 (544-584)||(30563410-30563450)
chr2 (25-73)||(40759262-40759310)
[»] chr6 (16 HSPs)
chr6 (527-591)||(9024177-9024241)
chr6 (35-72)||(3785652-3785689)
chr6 (539-586)||(19602194-19602241)
chr6 (519-573)||(7377991-7378045)
chr6 (514-584)||(13364693-13364763)
chr6 (512-566)||(18612640-18612694)
chr6 (532-582)||(34541756-34541806)
chr6 (526-575)||(4859113-4859162)
chr6 (514-575)||(7265581-7265642)
chr6 (541-574)||(10157995-10158028)
chr6 (514-575)||(19040362-19040423)
chr6 (539-584)||(34446566-34446611)
chr6 (526-575)||(34895034-34895083)
chr6 (544-580)||(2140499-2140535)
chr6 (527-575)||(9617444-9617492)
chr6 (527-575)||(9629393-9629441)
[»] chr3 (12 HSPs)
chr3 (521-582)||(20691322-20691383)
chr3 (512-574)||(20141107-20141168)
chr3 (539-584)||(8039207-8039252)
chr3 (522-575)||(40150567-40150620)
chr3 (539-586)||(12704670-12704717)
chr3 (25-63)||(9832675-9832713)
chr3 (516-574)||(23271984-23272042)
chr3 (541-591)||(34409357-34409407)
chr3 (526-591)||(13807163-13807228)
chr3 (527-575)||(9210826-9210874)
chr3 (25-53)||(44988365-44988393)
chr3 (539-575)||(52369785-52369821)
[»] chr4 (22 HSPs)
chr4 (528-584)||(18513243-18513299)
chr4 (539-584)||(5654604-5654649)
chr4 (512-591)||(21345519-21345598)
chr4 (30-73)||(47146046-47146089)
chr4 (521-575)||(33950146-33950200)
chr4 (539-580)||(10546153-10546194)
chr4 (516-584)||(56049878-56049945)
chr4 (26-73)||(2996675-2996722)
chr4 (537-584)||(14465305-14465352)
chr4 (543-578)||(26276026-26276061)
chr4 (537-575)||(11110213-11110251)
chr4 (30-72)||(29376006-29376048)
chr4 (516-573)||(34589693-34589753)
chr4 (538-584)||(43299983-43300029)
chr4 (538-584)||(43300617-43300663)
chr4 (30-72)||(46860021-46860063)
chr4 (539-584)||(20743291-20743336)
chr4 (539-584)||(31243561-31243606)
chr4 (32-73)||(39931301-39931342)
chr4 (547-584)||(43188613-43188650)
chr4 (25-73)||(11191599-11191647)
chr4 (25-73)||(54277243-54277291)
[»] chr1 (23 HSPs)
chr1 (512-584)||(19637769-19637841)
chr1 (528-584)||(30847722-30847778)
chr1 (25-73)||(32958739-32958787)
chr1 (537-587)||(2445868-2445918)
chr1 (526-575)||(3921677-3921726)
chr1 (539-591)||(7988464-7988516)
chr1 (34-78)||(15361808-15361852)
chr1 (512-584)||(33202904-33202976)
chr1 (26-72)||(10280752-10280798)
chr1 (527-577)||(25361894-25361944)
chr1 (542-575)||(11571595-11571628)
chr1 (521-590)||(18556021-18556090)
chr1 (537-590)||(19324557-19324610)
chr1 (527-588)||(31667422-31667483)
chr1 (543-584)||(40747790-40747831)
chr1 (30-70)||(4197174-4197214)
chr1 (527-575)||(7918212-7918260)
chr1 (541-573)||(14332420-14332452)
chr1 (527-575)||(21038093-21038141)
chr1 (27-71)||(23402135-23402179)
chr1 (25-73)||(24460321-24460369)
chr1 (25-73)||(33976280-33976328)
chr1 (527-591)||(40176597-40176661)
[»] chr7 (13 HSPs)
chr7 (512-575)||(4909161-4909224)
chr7 (537-584)||(38134417-38134464)
chr7 (520-574)||(37775993-37776047)
chr7 (514-591)||(5937409-5937486)
chr7 (539-584)||(7133291-7133336)
chr7 (537-584)||(36314638-36314685)
chr7 (541-580)||(44172905-44172944)
chr7 (537-575)||(1415580-1415618)
chr7 (527-577)||(9482942-9482992)
chr7 (540-582)||(21247750-21247792)
chr7 (541-575)||(31808524-31808558)
chr7 (537-586)||(12278834-12278883)
chr7 (514-566)||(25956464-25956516)
[»] chr5 (13 HSPs)
chr5 (537-591)||(41600892-41600946)
chr5 (538-587)||(43208286-43208335)
chr5 (540-584)||(2419858-2419902)
chr5 (540-575)||(11596469-11596504)
chr5 (537-584)||(28296329-28296376)
chr5 (527-573)||(41558655-41558701)
chr5 (27-72)||(1084061-1084106)
chr5 (527-584)||(32630736-32630793)
chr5 (527-575)||(3966513-3966561)
chr5 (539-575)||(18607110-18607146)
chr5 (521-565)||(19167571-19167615)
chr5 (539-575)||(31264448-31264484)
chr5 (25-65)||(34205351-34205391)
[»] scaffold0571 (1 HSPs)
scaffold0571 (541-582)||(7693-7734)
[»] scaffold0011 (1 HSPs)
scaffold0011 (526-575)||(240021-240070)
[»] scaffold0049 (1 HSPs)
scaffold0049 (527-575)||(56932-56980)


Alignment Details
Target: chr8 (Bit Score: 452; Significance: 0; HSPs: 20)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 452; E-Value: 0
Query Start/End: Original strand, 9 - 511
Target Start/End: Original strand, 7616292 - 7616795
Alignment:
Q  9 cgttaatattaagctcgtttagattgacttatttgaacttatttattgtcataagcacttgtgagtgttttcagcttattttcataagctctaggattat 108  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||  |||||||||||||||| ||||||||||||||||||||||||||||    
T  7616292 cgttaatattaagctcgtttagattgacttatttgaacttatctattgtcatattcacttgtgagtgtttttagcttattttcataagctctaggattat 7616391  T
Q  109 ttatcatatgaaaacaatttgacttcacttttttgtttgttatatgaaaacaattcaaacttattcttctgctggtctatttatgaacataagattttat 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7616392 ttatcatatgaaaacaatttgacttcacttttttgtttgttatatgaaaacaattcaaacttattcttctgctggtctatttatgaacataagattttat 7616491  T
Q  209 ctttatgttgaatgtcttttgttttcatatctgaaatttaatatttttggcatctgagtgagggaaaagggttgtttacattcctatttataattcagaa 308  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| | |||||||||||||||    
T  7616492 ctttatgttgaatgtcttttgttttcatatctgaaatttaatatttttggcatctaagtgagggaaaagggttgtttacatttcaatttataattcagaa 7616591  T
Q  309 tatttcaatgattcttgccttgccattctttttctgtttatcttgtatcatgtaatagcttctccttccagaaatttaactagtaaaagaaatgactttg 408  Q
    |||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  7616592 tatttcaatgattcttgctttgccattcttcttctgtttatcttgtatcatgtaatagcttctccttccagaaatttaactagtaaaagaaatggctttg 7616691  T
Q  409 gat-aaatgtaccttacatgcatcaaattaataacatttaagtaggaattattaaagcaataatagttggctcatactatgaagcacatatactcctggg 507  Q
    ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  7616692 gataaaatgtaccttacatgcatcaaattaataacatttaagtaggaattattaaagcaataattgttggctcatactatgaagcacatatactcctggg 7616791  T
Q  508 atta 511  Q
    ||||    
T  7616792 atta 7616795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 512 - 591
Target Start/End: Original strand, 7616837 - 7616914
Alignment:
Q  512 atatgtatcgtgtctgacactgactcatatgattacattgaattgtgtcattttctcaaattatcatcagtgttgacgtg 591  Q
    ||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||| |||||||||    
T  7616837 atatgtatcgtgtctgacactgactcat--gattacattgaattgtgtcattttctcaaattatcatcagcgttgacgtg 7616914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 526 - 575
Target Start/End: Original strand, 29198479 - 29198528
Alignment:
Q  526 tgacactgactcatatgattacattgaattgtgtcattttctcaaattat 575  Q
    ||||| |||| ||||||||||||||||||| |||||||||||||||||||    
T  29198479 tgacattgacgcatatgattacattgaattatgtcattttctcaaattat 29198528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 25 - 73
Target Start/End: Original strand, 14926902 - 14926950
Alignment:
Q  25 gtttagattgacttatttgaacttatttattgtcataagcacttgtgag 73  Q
    |||| |||||||||||||||||||||||| || ||||||||||||||||    
T  14926902 gtttggattgacttatttgaacttatttactggcataagcacttgtgag 14926950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 26 - 69
Target Start/End: Complemental strand, 27465500 - 27465457
Alignment:
Q  26 tttagattgacttatttgaacttatttattgtcataagcacttg 69  Q
    ||||||||||||||||||||||||| ||||| ||||||||||||    
T  27465500 tttagattgacttatttgaacttatctattggcataagcacttg 27465457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 514 - 565
Target Start/End: Original strand, 44462183 - 44462234
Alignment:
Q  514 atgtatcgtgtctgacactgactcatatgattacattgaattgtgtcatttt 565  Q
    |||||||||||||||||| ||| |||||||||| ||||||||||||| ||||    
T  44462183 atgtatcgtgtctgacaccgacacatatgattaaattgaattgtgtcttttt 44462234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 514 - 565
Target Start/End: Original strand, 44469716 - 44469767
Alignment:
Q  514 atgtatcgtgtctgacactgactcatatgattacattgaattgtgtcatttt 565  Q
    |||||||||||||||||| ||| |||||||||| ||||||||||||| ||||    
T  44469716 atgtatcgtgtctgacaccgacacatatgattaaattgaattgtgtcttttt 44469767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 537 - 581
Target Start/End: Complemental strand, 3508100 - 3508056
Alignment:
Q  537 catatgattacattgaattgtgtcattttctcaaattatcatcag 581  Q
    ||||||||||||||||||| ||| ||||||||||||||| |||||    
T  3508100 catatgattacattgaattatgttattttctcaaattattatcag 3508056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 25 - 73
Target Start/End: Complemental strand, 4560652 - 4560604
Alignment:
Q  25 gtttagattgacttatttgaacttatttattgtcataagcacttgtgag 73  Q
    |||| ||||||||||||||| ||||| ||||| ||||||||||||||||    
T  4560652 gtttggattgacttatttgagcttatctattgacataagcacttgtgag 4560604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 543 - 578
Target Start/End: Complemental strand, 10441245 - 10441210
Alignment:
Q  543 attacattgaattgtgtcattttctcaaattatcat 578  Q
    ||||||||||||| ||||||||||||||||||||||    
T  10441245 attacattgaattatgtcattttctcaaattatcat 10441210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 537 - 584
Target Start/End: Original strand, 34201057 - 34201104
Alignment:
Q  537 catatgattacattgaattgtgtcattttctcaaattatcatcagtgt 584  Q
    ||||| ||||||||||||| ||||||||||||||||||| || |||||    
T  34201057 catataattacattgaattatgtcattttctcaaattattattagtgt 34201104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 30 - 73
Target Start/End: Original strand, 39881646 - 39881689
Alignment:
Q  30 gattgacttatttgaacttatttattgtcataagcacttgtgag 73  Q
    ||||||||||||||||||||| ||||| ||||| ||||||||||    
T  39881646 gattgacttatttgaacttatctattggcataaacacttgtgag 39881689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 522 - 584
Target Start/End: Original strand, 12606825 - 12606887
Alignment:
Q  522 tgtctgacactgactcatatgattacattgaattgtgtcattttctcaaattatcatcagtgt 584  Q
    |||||||||| ||| ||||| ||||||||||||| | | ||||||||||||||| | ||||||    
T  12606825 tgtctgacaccgacacatataattacattgaattatatgattttctcaaattattagcagtgt 12606887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 521 - 575
Target Start/End: Complemental strand, 12985456 - 12985402
Alignment:
Q  521 gtgtctgacactgactcatatgattacattgaattgtgtcattttctcaaattat 575  Q
    ||||| ||||| |||  |||||||||||||||||| ||| |||||||||||||||    
T  12985456 gtgtccgacaccgacatatatgattacattgaattatgtgattttctcaaattat 12985402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 518 - 584
Target Start/End: Original strand, 31236569 - 31236635
Alignment:
Q  518 atcgtgtctgacactgactcatatgattacattgaattgtgtcattttctcaaattatcatcagtgt 584  Q
    |||||||| | ||| ||| ||||| ||||||||||||| ||| ||||||||||||||| | ||||||    
T  31236569 atcgtgtccgtcaccgacacatataattacattgaattatgtgattttctcaaattattagcagtgt 31236635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 537 - 575
Target Start/End: Original strand, 37225754 - 37225792
Alignment:
Q  537 catatgattacattgaattgtgtcattttctcaaattat 575  Q
    ||||||||||||||||||| ||| |||||||||||||||    
T  37225754 catatgattacattgaattatgttattttctcaaattat 37225792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 519 - 575
Target Start/End: Complemental strand, 3025617 - 3025561
Alignment:
Q  519 tcgtgtctgacactgactcatatgattacattgaattgtgtcattttctcaaattat 575  Q
    ||||||| ||||||||| | ||| |||||| |||||| ||| |||||||||||||||    
T  3025617 tcgtgtccgacactgacacctataattacactgaattatgtgattttctcaaattat 3025561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 25 - 73
Target Start/End: Complemental strand, 3112273 - 3112225
Alignment:
Q  25 gtttagattgacttatttgaacttatttattgtcataagcacttgtgag 73  Q
    |||| ||||||||||| | | ||||||||||| ||||||||||||||||    
T  3112273 gtttggattgacttatgtaagcttatttattgacataagcacttgtgag 3112225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 25 - 73
Target Start/End: Complemental strand, 7714392 - 7714344
Alignment:
Q  25 gtttagattgacttatttgaacttatttattgtcataagcacttgtgag 73  Q
    |||| ||||||||||||||| ||||| || |||||||| ||||||||||    
T  7714392 gtttggattgacttatttgagcttatataatgtcataaacacttgtgag 7714344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 539 - 575
Target Start/End: Complemental strand, 40063997 - 40063961
Alignment:
Q  539 tatgattacattgaattgtgtcattttctcaaattat 575  Q
    |||||||||| |||||| |||||||||||||||||||    
T  40063997 tatgattacaatgaattatgtcattttctcaaattat 40063961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 53; Significance: 4e-21; HSPs: 16)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 512 - 588
Target Start/End: Complemental strand, 18571045 - 18570969
Alignment:
Q  512 atatgtatcgtgtctgacactgactcatatgattacattgaattgtgtcattttctcaaattatcatcagtgttgac 588  Q
    |||||||||||||  ||||||||| ||||||||||||||||||| ||||||||||||||||||| ||| ||||||||    
T  18571045 atatgtatcgtgttcgacactgacacatatgattacattgaattatgtcattttctcaaattattatcggtgttgac 18570969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 521 - 584
Target Start/End: Complemental strand, 37497184 - 37497121
Alignment:
Q  521 gtgtctgacactgactcatatgattacattgaattgtgtcattttctcaaattatcatcagtgt 584  Q
    ||||||||||| |||  |||| |||||||||||||||| |||||||||||||||| ||||||||    
T  37497184 gtgtctgacaccgacagatattattacattgaattgtggcattttctcaaattattatcagtgt 37497121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 527 - 573
Target Start/End: Original strand, 45000847 - 45000893
Alignment:
Q  527 gacactgactcatatgattacattgaattgtgtcattttctcaaatt 573  Q
    ||||| ||| |||||||||||||||||||||||||||||||||||||    
T  45000847 gacaccgacacatatgattacattgaattgtgtcattttctcaaatt 45000893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 516 - 591
Target Start/End: Original strand, 43585995 - 43586070
Alignment:
Q  516 gtatcgtgtctgacactgactcatatgattacattgaattgtgtcattttctcaaattatcatcagtgttgacgtg 591  Q
    |||||||||| ||||| ||| | | ||||||||||||||| ||||||||||||||| | | ||| |||||||||||    
T  43585995 gtatcgtgtccgacaccgacacttgtgattacattgaattatgtcattttctcaaaattttatctgtgttgacgtg 43586070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 536 - 580
Target Start/End: Complemental strand, 10250775 - 10250731
Alignment:
Q  536 tcatatgattacattgaattgtgtcattttctcaaattatcatca 580  Q
    |||| ||||||||||||||||||| ||||||||||||||| ||||    
T  10250775 tcatgtgattacattgaattgtgttattttctcaaattattatca 10250731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 528 - 586
Target Start/End: Complemental strand, 16630852 - 16630794
Alignment:
Q  528 acactgactcatatgattacattgaattgtgtcattttctcaaattatcatcagtgttg 586  Q
    |||||||| ||| |||||| |||||||| ||||||||||| ||||||| ||| ||||||    
T  16630852 acactgacacatgtgattaaattgaattatgtcattttcttaaattattatcggtgttg 16630794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 527 - 565
Target Start/End: Original strand, 37402085 - 37402123
Alignment:
Q  527 gacactgactcatatgattacattgaattgtgtcatttt 565  Q
    ||||||||| ||||||||||||||||||| |||||||||    
T  37402085 gacactgacacatatgattacattgaattatgtcatttt 37402123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 539 - 584
Target Start/End: Original strand, 10535772 - 10535817
Alignment:
Q  539 tatgattacattgaattgtgtcattttctcaaattatcatcagtgt 584  Q
    |||||||||| |||||| ||||||||||||||||||| ||| ||||    
T  10535772 tatgattacactgaattatgtcattttctcaaattattatcggtgt 10535817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 537 - 590
Target Start/End: Original strand, 19613624 - 19613677
Alignment:
Q  537 catatgattacattgaattgtgtcattttctcaaattatcatcagtgttgacgt 590  Q
    ||||| ||||||||||||| ||| ||||||||||||||| || ||||| |||||    
T  19613624 catatcattacattgaattatgttattttctcaaattattatgagtgtcgacgt 19613677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 538 - 575
Target Start/End: Complemental strand, 31026742 - 31026705
Alignment:
Q  538 atatgattacattgaattgtgtcattttctcaaattat 575  Q
    |||||||||||||||||| ||||||||||| |||||||    
T  31026742 atatgattacattgaattatgtcattttcttaaattat 31026705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 543 - 584
Target Start/End: Complemental strand, 40682024 - 40681983
Alignment:
Q  543 attacattgaattgtgtcattttctcaaattatcatcagtgt 584  Q
    ||||||||||||| ||||||||||||||||||| ||| ||||    
T  40682024 attacattgaattatgtcattttctcaaattattatcggtgt 40681983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 32 - 72
Target Start/End: Original strand, 14844908 - 14844948
Alignment:
Q  32 ttgacttatttgaacttatttattgtcataagcacttgtga 72  Q
    |||||||||||||| |||| ||||| |||||||||||||||    
T  14844908 ttgacttatttgaagttatctattggcataagcacttgtga 14844948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 25 - 73
Target Start/End: Original strand, 16785280 - 16785328
Alignment:
Q  25 gtttagattgacttatttgaacttatttattgtcataagcacttgtgag 73  Q
    |||| |||||||||| |||| |||||||| ||||||||||| |||||||    
T  16785280 gtttggattgacttagttgagcttatttactgtcataagcatttgtgag 16785328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 559 - 591
Target Start/End: Complemental strand, 19608429 - 19608397
Alignment:
Q  559 tcattttctcaaattatcatcagtgttgacgtg 591  Q
    ||||||||||||||||| |||||||||||||||    
T  19608429 tcattttctcaaattattatcagtgttgacgtg 19608397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 544 - 584
Target Start/End: Complemental strand, 30563450 - 30563410
Alignment:
Q  544 ttacattgaattgtgtcattttctcaaattatcatcagtgt 584  Q
    |||||||||||| ||||||||||||||||||| ||| ||||    
T  30563450 ttacattgaattatgtcattttctcaaattattatccgtgt 30563410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 25 - 73
Target Start/End: Complemental strand, 40759310 - 40759262
Alignment:
Q  25 gtttagattgacttatttgaacttatttattgtcataagcacttgtgag 73  Q
    |||| ||||| ||||||||| ||||| ||||| ||||||||||||||||    
T  40759310 gtttggattgccttatttgagcttatctattgacataagcacttgtgag 40759262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 45; Significance: 2e-16; HSPs: 16)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 527 - 591
Target Start/End: Original strand, 9024177 - 9024241
Alignment:
Q  527 gacactgactcatatgattacattgaattgtgtcattttctcaaattatcatcagtgttgacgtg 591  Q
    ||||||||| ||||||||||||||||||| ||||||||||||||||||||||  |||| ||||||    
T  9024177 gacactgacacatatgattacattgaattatgtcattttctcaaattatcatttgtgtcgacgtg 9024241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 35 - 72
Target Start/End: Original strand, 3785652 - 3785689
Alignment:
Q  35 acttatttgaacttatttattgtcataagcacttgtga 72  Q
    |||||||||||||||||||||| |||||||||||||||    
T  3785652 acttatttgaacttatttattggcataagcacttgtga 3785689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 539 - 586
Target Start/End: Original strand, 19602194 - 19602241
Alignment:
Q  539 tatgattacattgaattgtgtcattttctcaaattatcatcagtgttg 586  Q
    |||||||||| |||||| | ||||||||||||||||| ||||||||||    
T  19602194 tatgattacactgaattatatcattttctcaaattattatcagtgttg 19602241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 519 - 573
Target Start/End: Complemental strand, 7378045 - 7377991
Alignment:
Q  519 tcgtgtctgacactgactcatatgattacattgaattgtgtcattttctcaaatt 573  Q
    ||||||| ||||| ||| ||||| ||||||||||||| ||| |||||||||||||    
T  7378045 tcgtgtccgacaccgacacatataattacattgaattatgtgattttctcaaatt 7377991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 514 - 584
Target Start/End: Original strand, 13364693 - 13364763
Alignment:
Q  514 atgtatcgtgtctgacactgactcatatgattacattgaattgtgtcattttctcaaattatcatcagtgt 584  Q
    ||||||||||||  |||| ||| |||||||||||| |||||| | | ||||||||||||||| | ||||||    
T  13364693 atgtatcgtgtccaacaccgacacatatgattacactgaattatatgattttctcaaattataagcagtgt 13364763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 512 - 566
Target Start/End: Complemental strand, 18612694 - 18612640
Alignment:
Q  512 atatgtatcgtgtctgacactgactcatatgattacattgaattgtgtcattttc 566  Q
    ||||||||||| ||||||||  || ||||||||||||||||||| || |||||||    
T  18612694 atatgtatcgtatctgacaccaacacatatgattacattgaattatgacattttc 18612640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 532 - 582
Target Start/End: Original strand, 34541756 - 34541806
Alignment:
Q  532 tgactcatatgattacattgaattgtgtcattttctcaaattatcatcagt 582  Q
    |||| ||||||||||||||||||| ||||||||| || |||||| ||||||    
T  34541756 tgacacatatgattacattgaattttgtcattttttctaattattatcagt 34541806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 526 - 575
Target Start/End: Original strand, 4859113 - 4859162
Alignment:
Q  526 tgacactgactcatatgattacattgaattgtgtcattttctcaaattat 575  Q
    |||||||||| | | ||||||||||| ||| |||||||||||||||||||    
T  4859113 tgacactgacacgtgtgattacattggattatgtcattttctcaaattat 4859162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 514 - 575
Target Start/End: Original strand, 7265581 - 7265642
Alignment:
Q  514 atgtatcgtgtctgacactgactcatatgattacattgaattgtgtcattttctcaaattat 575  Q
    |||||| ||||| ||||| ||| ||||| |||||| |||||| ||| |||||||||||||||    
T  7265581 atgtattgtgtccgacaccgacacatataattacactgaattatgtgattttctcaaattat 7265642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 541 - 574
Target Start/End: Complemental strand, 10158028 - 10157995
Alignment:
Q  541 tgattacattgaattgtgtcattttctcaaatta 574  Q
    ||||||||||||||| ||||||||||||||||||    
T  10158028 tgattacattgaattatgtcattttctcaaatta 10157995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 514 - 575
Target Start/End: Complemental strand, 19040423 - 19040362
Alignment:
Q  514 atgtatcgtgtctgacactgactcatatgattacattgaattgtgtcattttctcaaattat 575  Q
    |||| ||||||| ||||| ||| ||||| |||||| |||||| ||| |||||||||||||||    
T  19040423 atgtgtcgtgtccgacacagacacatataattacactgaattatgtgattttctcaaattat 19040362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 539 - 584
Target Start/End: Complemental strand, 34446611 - 34446566
Alignment:
Q  539 tatgattacattgaattgtgtcattttctcaaattatcatcagtgt 584  Q
    |||||||||| |||||| ||||||||||||||||||| ||| ||||    
T  34446611 tatgattacactgaattatgtcattttctcaaattattatccgtgt 34446566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 526 - 575
Target Start/End: Original strand, 34895034 - 34895083
Alignment:
Q  526 tgacactgactcatatgattacattgaattgtgtcattttctcaaattat 575  Q
    |||||||||| | |||||||||| |||||||| | |||||||||||||||    
T  34895034 tgacactgacacctatgattacactgaattgtataattttctcaaattat 34895083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 544 - 580
Target Start/End: Original strand, 2140499 - 2140535
Alignment:
Q  544 ttacattgaattgtgtcattttctcaaattatcatca 580  Q
    |||||||||||| ||||||||||||||||||| ||||    
T  2140499 ttacattgaattatgtcattttctcaaattattatca 2140535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 527 - 575
Target Start/End: Complemental strand, 9617492 - 9617444
Alignment:
Q  527 gacactgactcatatgattacattgaattgtgtcattttctcaaattat 575  Q
    ||||| ||| ||||| ||||||||||||| ||| |||||||||||||||    
T  9617492 gacaccgacacatataattacattgaattatgtgattttctcaaattat 9617444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 527 - 575
Target Start/End: Complemental strand, 9629441 - 9629393
Alignment:
Q  527 gacactgactcatatgattacattgaattgtgtcattttctcaaattat 575  Q
    ||||| ||| ||||| ||||||||||||| ||| |||||||||||||||    
T  9629441 gacaccgacacatataattacattgaattatgtgattttctcaaattat 9629393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 521 - 582
Target Start/End: Complemental strand, 20691383 - 20691322
Alignment:
Q  521 gtgtctgacactgactcatatgattacattgaattgtgtcattttctcaaattatcatcagt 582  Q
    ||||||||||| ||| |||||||||||| |||||| ||||||||||||||||||| ||||||    
T  20691383 gtgtctgacaccgacacatatgattacactgaattatgtcattttctcaaattattatcagt 20691322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 512 - 574
Target Start/End: Complemental strand, 20141168 - 20141107
Alignment:
Q  512 atatgtatcgtgtctgacactgactcatatgattacattgaattgtgtcattttctcaaatta 574  Q
    |||||||||||||||||||| ||| |||||||||||||| |||| ||||| ||||||||||||    
T  20141168 atatgtatcgtgtctgacac-gacacatatgattacattcaattatgtcagtttctcaaatta 20141107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 539 - 584
Target Start/End: Complemental strand, 8039252 - 8039207
Alignment:
Q  539 tatgattacattgaattgtgtcattttctcaaattatcatcagtgt 584  Q
    ||||||||||||||||  || |||||||||||||||||||||||||    
T  8039252 tatgattacattgaatcatgccattttctcaaattatcatcagtgt 8039207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 522 - 575
Target Start/End: Original strand, 40150567 - 40150620
Alignment:
Q  522 tgtctgacactgactcatatgattacattgaattgtgtcattttctcaaattat 575  Q
    |||| ||||| ||| ||||||||||||||||||| | |||||||||||||||||    
T  40150567 tgtcagacaccgacacatatgattacattgaattatatcattttctcaaattat 40150620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 539 - 586
Target Start/End: Original strand, 12704670 - 12704717
Alignment:
Q  539 tatgattacattgaattgtgtcattttctcaaattatcatcagtgttg 586  Q
    ||||||||||||||||| ||||||||| ||||||||| ||| ||||||    
T  12704670 tatgattacattgaattatgtcattttttcaaattattatccgtgttg 12704717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 25 - 63
Target Start/End: Original strand, 9832675 - 9832713
Alignment:
Q  25 gtttagattgacttatttgaacttatttattgtcataag 63  Q
    |||||||||||||||||||| ||||||||||| ||||||    
T  9832675 gtttagattgacttatttgagcttatttattgacataag 9832713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 516 - 574
Target Start/End: Original strand, 23271984 - 23272042
Alignment:
Q  516 gtatcgtgtctgacactgactcatatgattacattgaattgtgtcattttctcaaatta 574  Q
    ||||||||||  |||| ||| |||||||||||||| |||| ||||| ||||||||||||    
T  23271984 gtatcgtgtccaacaccgacacatatgattacattcaattatgtcagtttctcaaatta 23272042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 541 - 591
Target Start/End: Original strand, 34409357 - 34409407
Alignment:
Q  541 tgattacattgaattgtgtcattttctcaaattatcatcagtgttgacgtg 591  Q
    ||||||||||||||| |||||||||||| || ||| ||| |||||||||||    
T  34409357 tgattacattgaattatgtcattttctcgaagtattatcggtgttgacgtg 34409407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 526 - 591
Target Start/End: Complemental strand, 13807228 - 13807163
Alignment:
Q  526 tgacactgactcatatgattacattgaattgtgtcattttctcaaattatcatcagtgttgacgtg 591  Q
    |||||| ||| ||||| |||| |||||||| ||| ||||||||||||| | |||||||||| ||||    
T  13807228 tgacaccgacacatattattatattgaattatgtgattttctcaaattgttatcagtgttggcgtg 13807163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 527 - 575
Target Start/End: Original strand, 9210826 - 9210874
Alignment:
Q  527 gacactgactcatatgattacattgaattgtgtcattttctcaaattat 575  Q
    |||| |||| ||| ||||| ||||||||| |||||||||||||||||||    
T  9210826 gacattgacacatgtgattccattgaattatgtcattttctcaaattat 9210874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 25 - 53
Target Start/End: Original strand, 44988365 - 44988393
Alignment:
Q  25 gtttagattgacttatttgaacttattta 53  Q
    |||||||||||||||||||||||||||||    
T  44988365 gtttagattgacttatttgaacttattta 44988393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 539 - 575
Target Start/End: Complemental strand, 52369821 - 52369785
Alignment:
Q  539 tatgattacattgaattgtgtcattttctcaaattat 575  Q
    ||||||||||||||||| ||| |||||||||||||||    
T  52369821 tatgattacattgaattatgtaattttctcaaattat 52369785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 22)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 528 - 584
Target Start/End: Original strand, 18513243 - 18513299
Alignment:
Q  528 acactgactcatatgattacattgaattgtgtcattttctcaaattatcatcagtgt 584  Q
    |||||||| ||||||||||||||||||| ||||||||||||||||||| ||| ||||    
T  18513243 acactgacacatatgattacattgaattatgtcattttctcaaattattatcggtgt 18513299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 539 - 584
Target Start/End: Original strand, 5654604 - 5654649
Alignment:
Q  539 tatgattacattgaattgtgtcattttctcaaattatcatcagtgt 584  Q
    ||||||||||||||||| ||||||||||||||||||| ||||||||    
T  5654604 tatgattacattgaattatgtcattttctcaaattattatcagtgt 5654649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 512 - 591
Target Start/End: Original strand, 21345519 - 21345598
Alignment:
Q  512 atatgtatcgtgtctgacactgactcatatgattacattgaattgtgtcattttctcaaattatcatcagtgttgacgtg 591  Q
    |||||||||||||||||||| |||  | ||||||||||||| || ||| ||||| ||||||||| ||  |||||||||||    
T  21345519 atatgtatcgtgtctgacaccgacataaatgattacattgagttatgttattttttcaaattattattggtgttgacgtg 21345598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 30 - 73
Target Start/End: Complemental strand, 47146089 - 47146046
Alignment:
Q  30 gattgacttatttgaacttatttattgtcataagcacttgtgag 73  Q
    ||||||||||||||||||||| ||||| ||||||||||||||||    
T  47146089 gattgacttatttgaacttatatattggcataagcacttgtgag 47146046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 521 - 575
Target Start/End: Complemental strand, 33950200 - 33950146
Alignment:
Q  521 gtgtctgacactgactcatatgattacattgaattgtgtcattttctcaaattat 575  Q
    ||||||||||| ||| |||||||||||||| |||| ||| |||||||||||||||    
T  33950200 gtgtctgacaccgacacatatgattacattaaattatgtgattttctcaaattat 33950146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 539 - 580
Target Start/End: Complemental strand, 10546194 - 10546153
Alignment:
Q  539 tatgattacattgaattgtgtcattttctcaaattatcatca 580  Q
    ||||||||||||||||| ||||||||||||||||||| ||||    
T  10546194 tatgattacattgaattatgtcattttctcaaattattatca 10546153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 516 - 584
Target Start/End: Complemental strand, 56049945 - 56049878
Alignment:
Q  516 gtatcgtgtctgacactgactcatatgattacattgaattgtgtcattttctcaaattatcatcagtgt 584  Q
    ||||| |||||||||| ||| ||||||||||||||||| | ||||| ||||||||||||| ||| ||||    
T  56049945 gtatcatgtctgacaccgacacatatgattacattgaactatgtca-tttctcaaattattatcggtgt 56049878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 26 - 73
Target Start/End: Complemental strand, 2996722 - 2996675
Alignment:
Q  26 tttagattgacttatttgaacttatttattgtcataagcacttgtgag 73  Q
    ||||||||  ||||||||||||||||||||| ||||||||||| ||||    
T  2996722 tttagattagcttatttgaacttatttattgacataagcacttttgag 2996675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 537 - 584
Target Start/End: Original strand, 14465305 - 14465352
Alignment:
Q  537 catatgattacattgaattgtgtcattttctcaaattatcatcagtgt 584  Q
    |||||||||| |||||||| ||||||||||||||||||| ||| ||||    
T  14465305 catatgattaaattgaattatgtcattttctcaaattattatcggtgt 14465352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 543 - 578
Target Start/End: Original strand, 26276026 - 26276061
Alignment:
Q  543 attacattgaattgtgtcattttctcaaattatcat 578  Q
    ||||||||||||| ||||||||||||||||||||||    
T  26276026 attacattgaattatgtcattttctcaaattatcat 26276061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 537 - 575
Target Start/End: Complemental strand, 11110251 - 11110213
Alignment:
Q  537 catatgattacattgaattgtgtcattttctcaaattat 575  Q
    ||||||||||||| ||||| |||||||||||||||||||    
T  11110251 catatgattacatcgaattatgtcattttctcaaattat 11110213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 30 - 72
Target Start/End: Complemental strand, 29376048 - 29376006
Alignment:
Q  30 gattgacttatttgaacttatttattgtcataagcacttgtga 72  Q
    ||||| ||||||||||||||| ||||| |||||||||||||||    
T  29376048 gattggcttatttgaacttatctattgacataagcacttgtga 29376006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 516 - 573
Target Start/End: Original strand, 34589693 - 34589753
Alignment:
Q  516 gtatcgtgtctgacactgactc---atatgattacattgaattgtgtcattttctcaaatt 573  Q
    |||||||||| ||||||||| |   | |||||||||||||||| |||||||||||||||||    
T  34589693 gtatcgtgtccgacactgacacgacacatgattacattgaattatgtcattttctcaaatt 34589753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 538 - 584
Target Start/End: Original strand, 43299983 - 43300029
Alignment:
Q  538 atatgattacattgaattgtgtcattttctcaaattatcatcagtgt 584  Q
    |||||||||||||||||| ||| ||||||||||||||| ||| ||||    
T  43299983 atatgattacattgaattatgtaattttctcaaattattatccgtgt 43300029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 538 - 584
Target Start/End: Complemental strand, 43300663 - 43300617
Alignment:
Q  538 atatgattacattgaattgtgtcattttctcaaattatcatcagtgt 584  Q
    |||||||||||||||||| ||| ||||||||||||||| ||| ||||    
T  43300663 atatgattacattgaattatgtaattttctcaaattattatccgtgt 43300617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 30 - 72
Target Start/End: Complemental strand, 46860063 - 46860021
Alignment:
Q  30 gattgacttatttgaacttatttattgtcataagcacttgtga 72  Q
    ||||||||||||||||||||| ||||  |||||||||||||||    
T  46860063 gattgacttatttgaacttatctattcacataagcacttgtga 46860021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 539 - 584
Target Start/End: Original strand, 20743291 - 20743336
Alignment:
Q  539 tatgattacattgaattgtgtcattttctcaaattatcatcagtgt 584  Q
    |||||||||| |||||| ||||||||||||||||||| ||| ||||    
T  20743291 tatgattacactgaattatgtcattttctcaaattattatccgtgt 20743336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 539 - 584
Target Start/End: Original strand, 31243561 - 31243606
Alignment:
Q  539 tatgattacattgaattgtgtcattttctcaaattatcatcagtgt 584  Q
    |||||||||| |||||| ||||||||||||||||||| || |||||    
T  31243561 tatgattacactgaattatgtcattttctcaaattattataagtgt 31243606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 32 - 73
Target Start/End: Original strand, 39931301 - 39931342
Alignment:
Q  32 ttgacttatttgaacttatttattgtcataagcacttgtgag 73  Q
    |||||||||||||| |||||||||| ||||| ||||||||||    
T  39931301 ttgacttatttgaatttatttattgacataaacacttgtgag 39931342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 547 - 584
Target Start/End: Complemental strand, 43188650 - 43188613
Alignment:
Q  547 cattgaattgtgtcattttctcaaattatcatcagtgt 584  Q
    ||||||||| ||||||||||||||||||| ||||||||    
T  43188650 cattgaattatgtcattttctcaaattattatcagtgt 43188613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 25 - 73
Target Start/End: Complemental strand, 11191647 - 11191599
Alignment:
Q  25 gtttagattgacttatttgaacttatttattgtcataagcacttgtgag 73  Q
    |||||||||| |||||||||  |||| | ||||||||||||||||||||    
T  11191647 gtttagattggcttatttgagtttatatcttgtcataagcacttgtgag 11191599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 25 - 73
Target Start/End: Original strand, 54277243 - 54277291
Alignment:
Q  25 gtttagattgacttatttgaacttatttattgtcataagcacttgtgag 73  Q
    |||||||||||||||||||||||||| || || ||||| ||||| ||||    
T  54277243 gtttagattgacttatttgaacttatctagtgacataaacacttatgag 54277291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 23)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 512 - 584
Target Start/End: Complemental strand, 19637841 - 19637769
Alignment:
Q  512 atatgtatcgtgtctgacactgactcatatgattacattgaattgtgtcattttctcaaattatcatcagtgt 584  Q
    |||||||||||||| ||||| ||| ||||||||||||||||||  ||||||||||| ||||||| ||| ||||    
T  19637841 atatgtatcgtgtccgacaccgacacatatgattacattgaataatgtcattttcttaaattattatcggtgt 19637769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 528 - 584
Target Start/End: Original strand, 30847722 - 30847778
Alignment:
Q  528 acactgactcatatgattacattgaattgtgtcattttctcaaattatcatcagtgt 584  Q
    |||||||| ||||||||||||||||||| ||||||||| ||||||||| | ||||||    
T  30847722 acactgacacatatgattacattgaattatgtcattttttcaaattattagcagtgt 30847778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 25 - 73
Target Start/End: Complemental strand, 32958787 - 32958739
Alignment:
Q  25 gtttagattgacttatttgaacttatttattgtcataagcacttgtgag 73  Q
    |||||||||||||||||||| ||||| || |||||||||||||||||||    
T  32958787 gtttagattgacttatttgagcttatctactgtcataagcacttgtgag 32958739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 537 - 587
Target Start/End: Complemental strand, 2445918 - 2445868
Alignment:
Q  537 catatgattacattgaattgtgtcattttctcaaattatcatcagtgttga 587  Q
    |||||||||| |||||||| ||||||||||||||||||||||  |||||||    
T  2445918 catatgattaaattgaattatgtcattttctcaaattatcattggtgttga 2445868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 526 - 575
Target Start/End: Complemental strand, 3921726 - 3921677
Alignment:
Q  526 tgacactgactcatatgattacattgaattgtgtcattttctcaaattat 575  Q
    |||||||||| |  |||||||||||||||| |||||||||||||||||||    
T  3921726 tgacactgacacgcatgattacattgaattatgtcattttctcaaattat 3921677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 539 - 591
Target Start/End: Original strand, 7988464 - 7988516
Alignment:
Q  539 tatgattacattgaattgtgtcattttctcaaattatcatcagtgttgacgtg 591  Q
    ||||||||||||||||| ||||| ||||| ||||||| |||||||| ||||||    
T  7988464 tatgattacattgaattatgtcactttcttaaattattatcagtgtcgacgtg 7988516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 34 - 78
Target Start/End: Complemental strand, 15361852 - 15361808
Alignment:
Q  34 gacttatttgaacttatttattgtcataagcacttgtgagtgttt 78  Q
    |||||||||||||||||||| ||||||||||| |||||| |||||    
T  15361852 gacttatttgaacttatttactgtcataagcatttgtgactgttt 15361808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 512 - 584
Target Start/End: Complemental strand, 33202976 - 33202904
Alignment:
Q  512 atatgtatcgtgtctgacactgactcatatgattacattgaattgtgtcattttctcaaattatcatcagtgt 584  Q
    ||||||||||||||||||||  |  |||||||||||||||| || ||||||||| | ||||||| ||| ||||    
T  33202976 atatgtatcgtgtctgacaccaaaacatatgattacattgatttatgtcattttttaaaattattatcggtgt 33202904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 26 - 72
Target Start/End: Complemental strand, 10280798 - 10280752
Alignment:
Q  26 tttagattgacttatttgaacttatttattgtcataagcacttgtga 72  Q
    ||||||||||||||||||||| ||| ||||| |||||||| ||||||    
T  10280798 tttagattgacttatttgaacctatctattggcataagcaattgtga 10280752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 527 - 577
Target Start/End: Complemental strand, 25361944 - 25361894
Alignment:
Q  527 gacactgactcatatgattacattgaattgtgtcattttctcaaattatca 577  Q
    ||||||||| ||||| |||||| |||||| ||| |||||||||||||||||    
T  25361944 gacactgacacatataattacactgaattatgtgattttctcaaattatca 25361894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 542 - 575
Target Start/End: Complemental strand, 11571628 - 11571595
Alignment:
Q  542 gattacattgaattgtgtcattttctcaaattat 575  Q
    |||||||||||||| |||||||||||||||||||    
T  11571628 gattacattgaattatgtcattttctcaaattat 11571595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 521 - 590
Target Start/End: Original strand, 18556021 - 18556090
Alignment:
Q  521 gtgtctgacactgactcatatgattacattgaattgtgtcattttctcaaattatcatcagtgttgacgt 590  Q
    ||||||||||||||| ||| |||||||| | |||| ||||||||| | ||||||| | | ||||||||||    
T  18556021 gtgtctgacactgacacatgtgattacagtcaattatgtcattttattaaattattaccggtgttgacgt 18556090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 537 - 590
Target Start/End: Complemental strand, 19324610 - 19324557
Alignment:
Q  537 catatgattacattgaattgtgtcattttctcaaattatcatcagtgttgacgt 590  Q
    ||||| |||||| |||||| ||| ||||||||||||||||| |||||| |||||    
T  19324610 catataattacactgaattatgtgattttctcaaattatcagcagtgtcgacgt 19324557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 527 - 588
Target Start/End: Complemental strand, 31667483 - 31667422
Alignment:
Q  527 gacactgactcatatgattacattgaattgtgtcattttctcaaattatcatcagtgttgac 588  Q
    ||||| ||| ||| |||||||||| |||| ||||||||||| ||||||| | ||||||||||    
T  31667483 gacaccgacacatgtgattacatttaattatgtcattttctaaaattattaccagtgttgac 31667422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 543 - 584
Target Start/End: Original strand, 40747790 - 40747831
Alignment:
Q  543 attacattgaattgtgtcattttctcaaattatcatcagtgt 584  Q
    ||||||||||||| ||||||||||||||||||| ||| ||||    
T  40747790 attacattgaattatgtcattttctcaaattattatccgtgt 40747831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 30 - 70
Target Start/End: Original strand, 4197174 - 4197214
Alignment:
Q  30 gattgacttatttgaacttatttattgtcataagcacttgt 70  Q
    |||||||||||||||||||||  |||| |||||||||||||    
T  4197174 gattgacttatttgaacttatcaattggcataagcacttgt 4197214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 527 - 575
Target Start/End: Original strand, 7918212 - 7918260
Alignment:
Q  527 gacactgactcatatgattacattgaattgtgtcattttctcaaattat 575  Q
    ||||||||| ||||| |||||| |||||| ||| |||||||||||||||    
T  7918212 gacactgacacatataattacactgaattatgtgattttctcaaattat 7918260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 541 - 573
Target Start/End: Complemental strand, 14332452 - 14332420
Alignment:
Q  541 tgattacattgaattgtgtcattttctcaaatt 573  Q
    ||||||||||||||| |||||||||||||||||    
T  14332452 tgattacattgaattatgtcattttctcaaatt 14332420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 527 - 575
Target Start/End: Complemental strand, 21038141 - 21038093
Alignment:
Q  527 gacactgactcatatgattacattgaattgtgtcattttctcaaattat 575  Q
    ||||||||| |||||||||||| |||||| ||| ||||||| |||||||    
T  21038141 gacactgacgcatatgattacactgaattatgtaattttcttaaattat 21038093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 27 - 71
Target Start/End: Complemental strand, 23402179 - 23402135
Alignment:
Q  27 ttagattgacttatttgaacttatttattgtcataagcacttgtg 71  Q
    |||||||||||||||||||||||| |||||   ||||||||||||    
T  23402179 ttagattgacttatttgaacttatctattggtgtaagcacttgtg 23402135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 25 - 73
Target Start/End: Original strand, 24460321 - 24460369
Alignment:
Q  25 gtttagattgacttatttgaacttatttattgtcataagcacttgtgag 73  Q
    |||| ||||||||||||||||||||| || || ||| ||||||||||||    
T  24460321 gtttggattgacttatttgaacttatctactgacatgagcacttgtgag 24460369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 25 - 73
Target Start/End: Complemental strand, 33976328 - 33976280
Alignment:
Q  25 gtttagattgacttatttgaacttatttattgtcataagcacttgtgag 73  Q
    |||| ||||||||||||||| |||||||| || ||| ||||||||||||    
T  33976328 gtttggattgacttatttgagcttatttaatgacatcagcacttgtgag 33976280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 527 - 591
Target Start/End: Complemental strand, 40176661 - 40176597
Alignment:
Q  527 gacactgactcatatgattacattgaattgtgtcattttctcaaattatcatcagtgttgacgtg 591  Q
    ||||||||| ||| ||||||||||||||   |||||||||||||| | | ||| |||||||||||    
T  40176661 gacactgacacatgtgattacattgaatgaagtcattttctcaaaattttatcggtgttgacgtg 40176597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 512 - 575
Target Start/End: Complemental strand, 4909224 - 4909161
Alignment:
Q  512 atatgtatcgtgtctgacactgactcatatgattacattgaattgtgtcattttctcaaattat 575  Q
    |||||||| ||||| ||||||||| |||||||||||| |||||| ||| |||||||||||||||    
T  4909224 atatgtattgtgtccgacactgacacatatgattacaatgaattatgtaattttctcaaattat 4909161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 537 - 584
Target Start/End: Original strand, 38134417 - 38134464
Alignment:
Q  537 catatgattacattgaattgtgtcattttctcaaattatcatcagtgt 584  Q
    ||||||||||||||||||| ||||||||||||||||||| ||| ||||    
T  38134417 catatgattacattgaattatgtcattttctcaaattattatcggtgt 38134464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 520 - 574
Target Start/End: Complemental strand, 37776047 - 37775993
Alignment:
Q  520 cgtgtctgacactgactcatatgattacattgaattgtgtcattttctcaaatta 574  Q
    ||||||| |||||||| ||| |||||||||| |||| ||||||||||||||||||    
T  37776047 cgtgtcttacactgacacatgtgattacatttaattatgtcattttctcaaatta 37775993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 514 - 591
Target Start/End: Original strand, 5937409 - 5937486
Alignment:
Q  514 atgtatcgtgtctgacactgactcatatgattacattgaattgtgtcattttctcaaattatcatcagtgttgacgtg 591  Q
    |||||||||| | ||||| ||| | | ||||||||||||||| ||||||||||||||| | | ||| |||||||||||    
T  5937409 atgtatcgtgaccgacacagacacttgtgattacattgaattatgtcattttctcaaaattttatccgtgttgacgtg 5937486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 539 - 584
Target Start/End: Original strand, 7133291 - 7133336
Alignment:
Q  539 tatgattacattgaattgtgtcattttctcaaattatcatcagtgt 584  Q
    |||||||||| |||||| ||||||||||||||||||||||| ||||    
T  7133291 tatgattacactgaattatgtcattttctcaaattatcatctgtgt 7133336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 537 - 584
Target Start/End: Original strand, 36314638 - 36314685
Alignment:
Q  537 catatgattacattgaattgtgtcattttctcaaattatcatcagtgt 584  Q
    ||||||||||||||||| | ||||||||||||||||||| || |||||    
T  36314638 catatgattacattgaaatatgtcattttctcaaattattatgagtgt 36314685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 541 - 580
Target Start/End: Original strand, 44172905 - 44172944
Alignment:
Q  541 tgattacattgaattgtgtcattttctcaaattatcatca 580  Q
    ||||||||||||||| ||||||||||||||||||| ||||    
T  44172905 tgattacattgaattatgtcattttctcaaattattatca 44172944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 537 - 575
Target Start/End: Complemental strand, 1415618 - 1415580
Alignment:
Q  537 catatgattacattgaattgtgtcattttctcaaattat 575  Q
    |||||||||||||||| |||||||||||| |||||||||    
T  1415618 catatgattacattgatttgtgtcattttttcaaattat 1415580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 527 - 577
Target Start/End: Complemental strand, 9482992 - 9482942
Alignment:
Q  527 gacactgactcatatgattacattgaattgtgtcattttctcaaattatca 577  Q
    ||||| ||| ||||| |||||| |||||||||| |||||||||||||||||    
T  9482992 gacaccgacacatataattacactgaattgtgtgattttctcaaattatca 9482942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 540 - 582
Target Start/End: Original strand, 21247750 - 21247792
Alignment:
Q  540 atgattacattgaattgtgtcattttctcaaattatcatcagt 582  Q
    ||||||||||||||||  |||||||||||||||||| ||||||    
T  21247750 atgattacattgaattacgtcattttctcaaattattatcagt 21247792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 541 - 575
Target Start/End: Original strand, 31808524 - 31808558
Alignment:
Q  541 tgattacattgaattgtgtcattttctcaaattat 575  Q
    |||||||||||| ||||||||||||||||||||||    
T  31808524 tgattacattgacttgtgtcattttctcaaattat 31808558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 537 - 586
Target Start/End: Complemental strand, 12278883 - 12278834
Alignment:
Q  537 catatgattacattgaattgtgtcattttctcaaattatcatcagtgttg 586  Q
    ||||| |||||| |||||| ||||||||||| ||||||| ||||||||||    
T  12278883 catataattacactgaattatgtcattttcttaaattattatcagtgttg 12278834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 514 - 566
Target Start/End: Complemental strand, 25956516 - 25956464
Alignment:
Q  514 atgtatcgtgtctgacactgactcatatgattacattgaattgtgtcattttc 566  Q
    |||||||||||| ||||| ||| | | ||||||||||||||| ||||||||||    
T  25956516 atgtatcgtgtccgacaccgacacttgtgattacattgaattatgtcattttc 25956464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 537 - 591
Target Start/End: Complemental strand, 41600946 - 41600892
Alignment:
Q  537 catatgattacattgaattgtgtcattttctcaaattatcatcagtgttgacgtg 591  Q
    |||||||||| |||||||||||| ||||||||||||||| |||| ||||||||||    
T  41600946 catatgattatattgaattgtgtaattttctcaaattattatcaatgttgacgtg 41600892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 538 - 587
Target Start/End: Original strand, 43208286 - 43208335
Alignment:
Q  538 atatgattacattgaattgtgtcattttctcaaattatcatcagtgttga 587  Q
    |||||||||||||||||| ||||||||||||||||||  ||| |||||||    
T  43208286 atatgattacattgaattatgtcattttctcaaattactatcggtgttga 43208335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 540 - 584
Target Start/End: Complemental strand, 2419902 - 2419858
Alignment:
Q  540 atgattacattgaattgtgtcattttctcaaattatcatcagtgt 584  Q
    ||||||||| |||||||||| ||||||||||||||| ||||||||    
T  2419902 atgattacactgaattgtgtaattttctcaaattattatcagtgt 2419858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 540 - 575
Target Start/End: Original strand, 11596469 - 11596504
Alignment:
Q  540 atgattacattgaattgtgtcattttctcaaattat 575  Q
    |||||||||||||||| |||||||||||||||||||    
T  11596469 atgattacattgaattatgtcattttctcaaattat 11596504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 537 - 584
Target Start/End: Complemental strand, 28296376 - 28296329
Alignment:
Q  537 catatgattacattgaattgtgtcattttctcaaattatcatcagtgt 584  Q
    ||||||| ||||||||||| ||||||||||||||||||| ||| ||||    
T  28296376 catatgagtacattgaattatgtcattttctcaaattattatcggtgt 28296329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 527 - 573
Target Start/End: Original strand, 41558655 - 41558701
Alignment:
Q  527 gacactgactcatatgattacattgaattgtgtcattttctcaaatt 573  Q
    ||||||||| ||| | ||||||||||||| |||||||||||||||||    
T  41558655 gacactgacacatttaattacattgaattatgtcattttctcaaatt 41558701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 27 - 72
Target Start/End: Original strand, 1084061 - 1084106
Alignment:
Q  27 ttagattgacttatttgaacttatttattgtcataagcacttgtga 72  Q
    ||||||||||||||||||  ||||||| || |||||||||||||||    
T  1084061 ttagattgacttatttgagtttatttactgacataagcacttgtga 1084106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 527 - 584
Target Start/End: Original strand, 32630736 - 32630793
Alignment:
Q  527 gacactgactcatatgattacattgaattgtgtcattttctcaaattatcatcagtgt 584  Q
    ||||||||| ||||| ||||||||||||| | | ||||||||||||||| ||| ||||    
T  32630736 gacactgacacatataattacattgaattatataattttctcaaattattatcggtgt 32630793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 527 - 575
Target Start/End: Complemental strand, 3966561 - 3966513
Alignment:
Q  527 gacactgactcatatgattacattgaattgtgtcattttctcaaattat 575  Q
    ||||| ||| ||||| |||||| |||||||||| |||||||||||||||    
T  3966561 gacaccgacacatataattacactgaattgtgtgattttctcaaattat 3966513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 539 - 575
Target Start/End: Original strand, 18607110 - 18607146
Alignment:
Q  539 tatgattacattgaattgtgtcattttctcaaattat 575  Q
    ||||||||||||||||| ||| |||||||||||||||    
T  18607110 tatgattacattgaattatgttattttctcaaattat 18607146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 521 - 565
Target Start/End: Original strand, 19167571 - 19167615
Alignment:
Q  521 gtgtctgacactgactcatatgattacattgaattgtgtcatttt 565  Q
    ||||||||||| ||| | | |||||||||||||||||||||||||    
T  19167571 gtgtctgacaccgacacttgtgattacattgaattgtgtcatttt 19167615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 539 - 575
Target Start/End: Complemental strand, 31264484 - 31264448
Alignment:
Q  539 tatgattacattgaattgtgtcattttctcaaattat 575  Q
    |||||||||| |||||| |||||||||||||||||||    
T  31264484 tatgattacactgaattatgtcattttctcaaattat 31264448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 25 - 65
Target Start/End: Complemental strand, 34205391 - 34205351
Alignment:
Q  25 gtttagattgacttatttgaacttatttattgtcataagca 65  Q
    |||| |||||||||||||||||||||||| || ||||||||    
T  34205391 gtttggattgacttatttgaacttatttactgacataagca 34205351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0571 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0571
Description:

Target: scaffold0571; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 541 - 582
Target Start/End: Complemental strand, 7734 - 7693
Alignment:
Q  541 tgattacattgaattgtgtcattttctcaaattatcatcagt 582  Q
    ||||| ||||||||| ||||||||||||||||||| ||||||    
T  7734 tgattgcattgaattatgtcattttctcaaattattatcagt 7693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0011 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 526 - 575
Target Start/End: Original strand, 240021 - 240070
Alignment:
Q  526 tgacactgactcatatgattacattgaattgtgtcattttctcaaattat 575  Q
    |||||| ||| ||||||||||||||||||| | | |||||||||||||||    
T  240021 tgacaccgacacatatgattacattgaattatattattttctcaaattat 240070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0049 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0049
Description:

Target: scaffold0049; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 527 - 575
Target Start/End: Complemental strand, 56980 - 56932
Alignment:
Q  527 gacactgactcatatgattacattgaattgtgtcattttctcaaattat 575  Q
    ||||||||| | |||||||||| |||||| | |||||||||||||||||    
T  56980 gacactgacacttatgattacactgaattatatcattttctcaaattat 56932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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