View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1717R-Insertion-9 (Length: 620)
Name: NF1717R-Insertion-9
Description: NF1717R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1717R-Insertion-9 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 557; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 557; E-Value: 0
Query Start/End: Original strand, 9 - 620
Target Start/End: Complemental strand, 44543110 - 44542505
Alignment:
| Q |
9 |
tgcatgcatgatatcactccttctattatatttgtaagataataaataaacttcatctcttggctttgcttcaattgacaaaggatgatggaggatgaaa |
108 |
Q |
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| T |
44543110 |
tgcatgcatgatatcactccttctattatatttgtaagataataaataaacttcatctcttggctttgcttcaattgacaaaggatgatggaggatgaaa |
44543011 |
T |
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| Q |
109 |
agacaacaaacaaacatggaaagaagaaaatacacacttctttaggaagtataattattggtggtgaaggtggaattacgggacttcttgtgttcggtgg |
208 |
Q |
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| T |
44543010 |
agacaacaaacaaacatggaaagaagaaaatacacacttctttaggaagtataactattggtggtgaaggtggaattacgggacttcttgtgttcggtgg |
44542911 |
T |
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| Q |
209 |
agcattggccattgcaggtttcatggctgtgacttcttttggaagcaaacaacataagaaaaaacccatcatccatcctcagtctcaccaccaacaatta |
308 |
Q |
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| T |
44542910 |
agcattggctattgcaggtttcatggctgtgacttcttttggaagcaaacaacataagaaaaaacccatcatccatcctca------ccaccaacaatta |
44542817 |
T |
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| Q |
309 |
ttattggctcacgataaagactctcttcaaaatacaacatcccaacttgaggaggatgccacatcgtatgatataacaattaattaatatacacatatca |
408 |
Q |
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| T |
44542816 |
ttattggctgacgataaacactctcttcaaaattcaacatcccaacttgaggaggatgccacatcgtatgatataacaattaattaatatacacatatca |
44542717 |
T |
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| Q |
409 |
cacatagttgattggtaaatgtgtatctttttaaattgctgtcgtaattgcagttatgatcgccattgcagttatgctgcaaacctttacgccgtgattg |
508 |
Q |
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| T |
44542716 |
cacatagttgattagtaaatgtgtatctttttaaattgcggtcgtaattgcagttatgatcgccattgcagttatgctgcaaacctttatgccgtgattg |
44542617 |
T |
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| Q |
509 |
cggttgcagacagcgatttaaaacattcttttattaataattatgtccttccttttgtcatgttcaattacataaaatttcattacatcgttaacttgtg |
608 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44542616 |
cggttgcagacagcgatttaaaacattcttttattaataattatgtccttccttttgtcatgttcaattacataaaatttcattacatcgttaacttgtg |
44542517 |
T |
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| Q |
609 |
tcaattgttgca |
620 |
Q |
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| T |
44542516 |
tcaattgttgca |
44542505 |
T |
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