View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1717_high_22 (Length: 243)
Name: NF1717_high_22
Description: NF1717
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1717_high_22 |
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Alignment Details
Target: chr3 (Bit Score: 194; Significance: 1e-105; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 26450800 - 26450573
Alignment:
| Q |
1 |
tcaatatgttcttcaacaaaagactcaatcattcaaattttcaaacaagaactaattctccaaccaaataacaaaaaacttag---tcaattatggaaat |
97 |
Q |
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|||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| || | |
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| T |
26450800 |
tcaatatgatcttcaacaaaagacttaatcattcaaattttcaaacaagaactaattctccaaccaaataacaaaaaacttagatatcaattatgaaagt |
26450701 |
T |
|
| Q |
98 |
cttaccatcatcttccaagcaagatatccagttggtccacccttatgcccttcaggatcatcctcattacaagcaatcccacgtctcaaaacctcttgca |
197 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26450700 |
cttaccatcatcttccaagcaagatatccagttggtccacccttatgcccatcaggatcatcctcattacaagcaatcccacgtctcaaaacctcttgca |
26450601 |
T |
|
| Q |
198 |
caaacaaacaagcaccatctttctcccc |
225 |
Q |
| |
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|||||||||||||||||||||||||||| |
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| T |
26450600 |
caaacaaacaagcaccatctttctcccc |
26450573 |
T |
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