View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1717_high_27 (Length: 237)
Name: NF1717_high_27
Description: NF1717
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1717_high_27 |
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Alignment Details
Target: chr2 (Bit Score: 180; Significance: 2e-97; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 180; E-Value: 2e-97
Query Start/End: Original strand, 21 - 221
Target Start/End: Complemental strand, 7259500 - 7259298
Alignment:
| Q |
21 |
tttgttttcttttataatttgttttgaaccatctca--atagggggtccaaactatacttatcttttaaggtgtctatgttttattttcagttatgtttc |
118 |
Q |
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| T |
7259500 |
tttgttttcttttataatttgttttgaaccatcccactataggtggtccaaactatacttatcttttaaggtgtctatgttttattttcagttatgtttc |
7259401 |
T |
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| Q |
119 |
aacatatgcacatctttttgaagttatacggtgatgctaatgaagatcttttgatctttggcatgcaatcaatgttcttttttaaggatacatgcaaagg |
218 |
Q |
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| T |
7259400 |
aacatatgcacatctttttgaagttatacggtgatgctaatgaagatcttttgatctttggcatgcaaacaatgttcttttttaaggatacatgcaaagg |
7259301 |
T |
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| Q |
219 |
aat |
221 |
Q |
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| T |
7259300 |
aat |
7259298 |
T |
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