View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1717_high_3 (Length: 407)
Name: NF1717_high_3
Description: NF1717
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1717_high_3 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 324; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 18 - 399
Target Start/End: Complemental strand, 41110596 - 41110224
Alignment:
| Q |
18 |
atcttctgagtttaatttggtacaacaatttaaaaacctcaactatattccattggcactggtcctatacaaacatttactctttaagcctacctacact |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
41110596 |
atcttctgagtttaatttggtacaacaatttaaaaacctcaactatattccattggcactggtcctatacaaacatttactctttaagcctac----act |
41110501 |
T |
|
| Q |
118 |
agtgaatgtatgcatggaataatgaggcatgagcagactagactaagtcatcatccaatgtccaaaacaagtagtttgtttgaagaaaaagaatctcacg |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41110500 |
agtgaatgtatgcatggaataatgaggcatgagcagacta-----agtcatcatccaatgtccaaaacaagtagtttgtttgaagaaaaagaatctcacg |
41110406 |
T |
|
| Q |
218 |
gaagggcagcttaattgccatacagccagccctatcgaaatatctagaaccaaagtatttataagtaannnnnnnaaaataccgtattttttccttcttt |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
41110405 |
gaagggcagcttaattgccatacagccagccctatcgaaatatctagaaccaaagtatttataagtaatttttttaaaataccgtattttttccttcttt |
41110306 |
T |
|
| Q |
318 |
ctgaaatacggtattattttgtacgctaaaatacagtactctttaacaacacatcatcgttagttagattggaccctatgct |
399 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41110305 |
ctgaaatacggtattattttgtacgctaaaatacagtactctttaacaacacatcatcgttagttagattggaccctatgct |
41110224 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University