View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1717_high_6 (Length: 344)
Name: NF1717_high_6
Description: NF1717
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1717_high_6 |
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Alignment Details
Target: chr1 (Bit Score: 319; Significance: 1e-180; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 12 - 330
Target Start/End: Original strand, 2291578 - 2291896
Alignment:
| Q |
12 |
aatactaatttaaatgagcttatatgcttacaaatgaaatgtcaagatagaattgagagttaggtaggtgattaagagctagtaacaagatatttgtgaa |
111 |
Q |
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| T |
2291578 |
aatactaatttaaatgagcttatatgcttacaaatgaaatgtcaagatagaattgagagttaggtaggtgattaagagctagtaacaagatatttgtgaa |
2291677 |
T |
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| Q |
112 |
tttgttaaaaggaacggtgcaagtaacatgttttttaatgcacaggatgattaaaacgaaaatttagatatatagggatataaaattatatttaaccata |
211 |
Q |
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| T |
2291678 |
tttgttaaaaggaacggtgcaagtaacatgttttttaatgcacaggatgattaaaacgaaaatttagatatatagggatataaaattatatttaaccata |
2291777 |
T |
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| Q |
212 |
ttctttatgtgcaatatatctggttgagttggtaaaattctattaatgataaattttataaccatttctctttatattttgcactccaaataatgagttg |
311 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2291778 |
ttctttatgtgcaatatatctggttgagttggtaaaattctattaatgataaattttataaccatttctctttatattttgcactccaaataatgagttg |
2291877 |
T |
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| Q |
312 |
atgggtatgtgaatgttat |
330 |
Q |
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||||||||||||||||||| |
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| T |
2291878 |
atgggtatgtgaatgttat |
2291896 |
T |
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