View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1717_high_7 (Length: 341)
Name: NF1717_high_7
Description: NF1717
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1717_high_7 |
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Alignment Details
Target: chr1 (Bit Score: 296; Significance: 1e-166; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 24 - 338
Target Start/End: Complemental strand, 6534303 - 6533986
Alignment:
| Q |
24 |
agcatggcttcctctactctttcaactcct---cctaatctcctcaaacaccaaaacagaccctcttccaccacctcatcacgacgttcctccacctttc |
120 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6534303 |
agcatggcttcctctactctttcaactccttctcctaatctcctcaaacaccaaaacagaccctcttccaccacctcatcacgacgttcctccacctttc |
6534204 |
T |
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| Q |
121 |
ttccacctataagatcctcagtttcagaaataccacccttccaagtctccatctctcaaccacaaacaaccaaacttccgatccgtaaaatccctggtga |
220 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6534203 |
ttccacctataagatcctcagtttcagaaaaaccacccttccaagtctccatctctcaaccacaaacaaccaaacttccgatccgtaaaatccctggtga |
6534104 |
T |
|
| Q |
221 |
ctatggcatcccattcatccaaccttacaaagaccgtttagactatttctacaaccaaggtcgtgatgaatacttcaaatcacgtatccaaaaataccag |
320 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6534103 |
ctatggcatcccattcatccaaccatacaaagaccgtttagactatttctacaaccaaggtcgtgatgaatacttcaaatcacgtatccaaaaataccag |
6534004 |
T |
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| Q |
321 |
tcaactatcttccgcact |
338 |
Q |
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|||||||||||||||||| |
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| T |
6534003 |
tcaactatcttccgcact |
6533986 |
T |
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