View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1717_low_18 (Length: 262)
Name: NF1717_low_18
Description: NF1717
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1717_low_18 |
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Alignment Details
Target: chr2 (Bit Score: 212; Significance: 1e-116; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 17 - 255
Target Start/End: Complemental strand, 15420610 - 15420374
Alignment:
| Q |
17 |
aatagatggttgtttgagactaaaggaacctatggaattggaaatgctttttggcaagatgatccaaattcttttggagatgaatgtgaaatgagcatgt |
116 |
Q |
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| T |
15420610 |
aatagatggttgtttgagactaaaggaacctatggaattggaaatgctttttggcaagatgatccaaattcttttggagatgaatgtgaaatgagcatgt |
15420511 |
T |
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| Q |
117 |
cagattttatggacaaaccttggaaaccattaactagaaaagttcaaattccaggcgctatactcagtccttataggtacctttcttaattatggtatat |
216 |
Q |
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| T |
15420510 |
cagattttatggacaaaccttggaaaccattaactagaaaagttcaaattccaggcgctatactcagtccttataggtacctttcttaattatgctatat |
15420411 |
T |
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| Q |
217 |
agtttttgttgcaatatgtataaaggttatatgcctatg |
255 |
Q |
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| T |
15420410 |
agtttttgttacaata--tttaaaggttatatgtctatg |
15420374 |
T |
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Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 71
Target Start/End: Complemental strand, 14599201 - 14599147
Alignment:
| Q |
17 |
aatagatggttgtttgagactaaaggaacctatggaattggaaatgctttttggc |
71 |
Q |
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| T |
14599201 |
aataaatggttgtttgagaccaaaggtacctatggagttggcaatgcttattggc |
14599147 |
T |
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