View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1717_low_19 (Length: 260)
Name: NF1717_low_19
Description: NF1717
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1717_low_19 |
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| [»] scaffold0425 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 116; Significance: 4e-59; HSPs: 10)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 67 - 242
Target Start/End: Original strand, 6447944 - 6448119
Alignment:
| Q |
67 |
ttagatgagattgcaactgatgcaccactgaagaagctgaaggccgaatctcaaccttctactagcaatattttcaacttcattccaactcttactaatc |
166 |
Q |
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| T |
6447944 |
ttagatgagattgcaactgatgcaccagtgaagaagctgaaggccgaatctcaaccttctactagcaatattttcaacttcattccaactcttgccaatc |
6448043 |
T |
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| Q |
167 |
catttgaatcaaggatcaaagaattgataaagagcctagattctcttgctcagcagattgatatgctggaattgaa |
242 |
Q |
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| T |
6448044 |
catttgaatctaggatcaaagacttgctaaagaatctagattatcttgcagagcaaaaggatgtgctggaattgaa |
6448119 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 11 - 192
Target Start/End: Complemental strand, 5251092 - 5250911
Alignment:
| Q |
11 |
acgtgaagaagtggcttggtgatgtcaaacatgctatgtatgaggctggccagctattagatgagattgcaactgatgcaccactgaagaagctgaaggc |
110 |
Q |
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| T |
5251092 |
acgtgaagaagtggcttgatgatcttaaacattatgcatatgaggttgaccagctgttagatgagattgcaactgatgcaccactgaagaagctgaaagc |
5250993 |
T |
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| Q |
111 |
cgaatctcaaccttctactagcaatattttcaacttcattccaactcttactaatccatttgaatcaaggatcaaagaattg |
192 |
Q |
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| T |
5250992 |
tgaatctcaaccttctactagcaaggtattcgacttcttttcatctttcactaatccatttgaatctaggattaaagaattg |
5250911 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 11 - 192
Target Start/End: Complemental strand, 5268979 - 5268798
Alignment:
| Q |
11 |
acgtgaagaagtggcttggtgatgtcaaacatgctatgtatgaggctggccagctattagatgagattgcaactgatgcaccactgaagaagctgaaggc |
110 |
Q |
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| T |
5268979 |
acgtgaagaagtggcttgatgatcttaaacattatgcatatgaggttgaccagctgttagatgagattgcaactgatacaccattgaagaagcagaaact |
5268880 |
T |
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| Q |
111 |
cgaatctcaaccttctactagcaatattttcaacttcattccaactcttactaatccatttgaatcaaggatcaaagaattg |
192 |
Q |
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| T |
5268879 |
tgaatctcaaccttctactagcaaggtattcgacttcatttcgtctttcactaatccatttgagtctaggatcaaagaattg |
5268798 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 12 - 192
Target Start/End: Original strand, 4388050 - 4388224
Alignment:
| Q |
12 |
cgtgaagaagtggcttggtgatgtcaaacatgctatgtatgaggctggccagctattagatgagattgcaactgatgcaccactgaagaagctgaaggcc |
111 |
Q |
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| T |
4388050 |
cgtgaagaagtggcttgatgatcttaaacataatgcatatgaggttgaccagctgttagatgagattgcaactgatgcaccattgaagaagcaga----- |
4388144 |
T |
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| Q |
112 |
gaatctcaaccttctactagcaatattttcaacttcattccaactcttactaatccatttgaatcaaggatcaaagaattg |
192 |
Q |
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| T |
4388145 |
-aatttgaaccttctactagcaaggtattcaacttcttttcatctttcattaatccatttgaatctaggatcaaagaattg |
4388224 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 11 - 192
Target Start/End: Complemental strand, 5299654 - 5299473
Alignment:
| Q |
11 |
acgtgaagaagtggcttggtgatgtcaaacatgctatgtatgaggctggccagctattagatgagattgcaactgatgcaccactgaagaagctgaaggc |
110 |
Q |
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| T |
5299654 |
acgtgaagaagtggcttggtgatcttaaacatgttgtgtatgaagcagatcaacttttggatgagattgcaacctacacaccaaacaagaagctgaaagt |
5299555 |
T |
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| Q |
111 |
cgaatctcaaccttctactagcaatattttcaacttcattccaactcttactaatccatttgaatcaaggatcaaagaattg |
192 |
Q |
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| T |
5299554 |
tgattctcaaccttctactagcaaggtattcgacttcttttcatcgtgtactgatccctttgagtctaggatcaaagaattg |
5299473 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 16 - 107
Target Start/End: Complemental strand, 5281572 - 5281481
Alignment:
| Q |
16 |
aagaagtggcttggtgatgtcaaacatgctatgtatgaggctggccagctattagatgagattgcaactgatgcaccactgaagaagctgaa |
107 |
Q |
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| T |
5281572 |
aagaagtggcttgatgatcttaaacatgctgtatatgaggcagaccaaattttcgatgagattgctactgacgcacaactgaataagctgaa |
5281481 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 124 - 170
Target Start/End: Original strand, 6453921 - 6453967
Alignment:
| Q |
124 |
tctactagcaatattttcaacttcattccaactcttactaatccatt |
170 |
Q |
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||||||| |||||||||||||||||||| | || ||||||||||||| |
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| T |
6453921 |
tctactatcaatattttcaacttcattctaccttttactaatccatt |
6453967 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 124 - 170
Target Start/End: Complemental strand, 6762432 - 6762386
Alignment:
| Q |
124 |
tctactagcaatattttcaacttcattccaactcttactaatccatt |
170 |
Q |
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||||||| |||||||||||||||||||| | || ||||||||||||| |
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| T |
6762432 |
tctactatcaatattttcaacttcattctaccttttactaatccatt |
6762386 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 13 - 90
Target Start/End: Original strand, 6553543 - 6553620
Alignment:
| Q |
13 |
gtgaagaagtggcttggtgatgtcaaacatgctatgtatgaggctggccagctattagatgagattgcaactgatgca |
90 |
Q |
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| T |
6553543 |
gtgaagaagtggcttgatgaacttaaacatgttgtttatgaggcagaccaactattagatgagatttctactgatgca |
6553620 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 13 - 90
Target Start/End: Complemental strand, 8455578 - 8455501
Alignment:
| Q |
13 |
gtgaagaagtggcttggtgatgtcaaacatgctatgtatgaggctggccagctattagatgagattgcaactgatgca |
90 |
Q |
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| T |
8455578 |
gtgaagaagtggcttgatgatcttaaacatgttgtttatgaagcagaccaactattagatgagatttctactgatgca |
8455501 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0425 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0425
Description:
Target: scaffold0425; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 13 - 90
Target Start/End: Original strand, 6582 - 6659
Alignment:
| Q |
13 |
gtgaagaagtggcttggtgatgtcaaacatgctatgtatgaggctggccagctattagatgagattgcaactgatgca |
90 |
Q |
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| T |
6582 |
gtgaagaagtggcttgatgaacttaaacatgttgtttatgaggcagaccaactattagatgagatttctactgatgca |
6659 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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