View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1717_low_2 (Length: 508)
Name: NF1717_low_2
Description: NF1717
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1717_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 457; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 457; E-Value: 0
Query Start/End: Original strand, 18 - 498
Target Start/End: Complemental strand, 27822700 - 27822220
Alignment:
| Q |
18 |
gtttgcccggaccataatgaacataagcttaacaatagattattctccacacatagtttctcctccggttcccatgcaatccccaacaatctctattcaa |
117 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27822700 |
gtttgcccggaccataataaacataagcttaacaatagattattctccacacatagtttctcctccggttcccatgcaatccccaacaatctctattcaa |
27822601 |
T |
|
| Q |
118 |
gtccatgtttctgtttatattgcattgcaaaaccatagattttgtgagggtgaggaagtgactttgccacactctcttttttcatacaccttttggccca |
217 |
Q |
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| T |
27822600 |
gtccatgtttctgtttatattgcattgcaaaaccatagattttgtgagggtgaggaagtgattttgccacactctcttttttcatacaccttttggccca |
27822501 |
T |
|
| Q |
218 |
agctacaagcttaggacactctttctcaatgcttagtttcccatatatctcgtaagtgtaaaaccaactagtgaagggtataagagccacatcaacatac |
317 |
Q |
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| T |
27822500 |
agctacaagcttaggacactctttctcaatgcttaatttcccatatgtctcgtaagtgtaaaaccaaccagtgaagggtataagagccacatcaacatac |
27822401 |
T |
|
| Q |
318 |
ccaaactcatctccaccaaaatatggcttgtctccaagctcaccttctagagtcttcaagcattctataaacttctttttaccctcttcttgttcttcac |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27822400 |
ccaaactcatctccaccaaaatatggcttgtctccaagctcatcttctagagtcttcaagcattctataaacttctttttaccctcttcttgttcttcac |
27822301 |
T |
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| Q |
418 |
cctttcctgtccacaccttctttccaatgttgtatacctacatcaattagaatccaataaattaaaccatgataccctatg |
498 |
Q |
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| T |
27822300 |
cctttcctgtccacaccttctttccaatgttgtatacctacatcaattagaatccaataaattaaaccatgataccctatg |
27822220 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 75 - 498
Target Start/End: Complemental strand, 27826583 - 27826158
Alignment:
| Q |
75 |
ttctcctccggttcccatgcaatcccca-acaatctctattcaagtccatgtttctgtttatattgcattgcaaaaccatagattttgtgagggtgagga |
173 |
Q |
| |
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|||| ||||||| ||||||||||||| | | |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27826583 |
ttcttctccggtccccatgcaatcccaacaaaatctctattcaagtctatgtttctgtttatattgcattgcaaaaccatagattttgtgagggtgagga |
27826484 |
T |
|
| Q |
174 |
agtgactttgccacactctcttttttcatacaccttttggcccaagctacaagcttaggacactctttctcaatgcttagtttcccatatatctcgtaag |
273 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27826483 |
agtgactttgccacactctctttttccatacaccttttggcccaagctacaagcttaggacactctttctcaatgcttagtttcccatatatctcgtaag |
27826384 |
T |
|
| Q |
274 |
tgtaaaaccaactagtgaagggtataagagccacatcaacatacccaaactcatctccaccaaaatatggcttgtctccaagctcaccttctagagtctt |
373 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
27826383 |
tgtaaaaccaactagtgaagggtataagagccacatcaacatacccaaactcatctccaccaaaatatggcttgtctccaagctcatcttctagagtctt |
27826284 |
T |
|
| Q |
374 |
caagcattctataaacttctttttaccctcttcttgttcttcaccctttcctgtccacaccttctttccaatgttgtatacctacatcaattagaatcca |
473 |
Q |
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||||| ||||||||||||||||||||| || |||||||||||| |||||||| |||| | |||| ||| |||| |||||||||||||||||||||||||| |
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| T |
27826283 |
caagccttctataaacttctttttaccttcctcttgttcttcaacctttcctttccatagcttccttcgaatgctgtatacctacatcaattagaatcca |
27826184 |
T |
|
| Q |
474 |
a-taaattaaaccatgataccctatg |
498 |
Q |
| |
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| ||||||| ||||||||||||||| |
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| T |
27826183 |
acaaaattaagccatgataccctatg |
27826158 |
T |
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