View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1717_low_20 (Length: 258)

Name: NF1717_low_20
Description: NF1717
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1717_low_20
NF1717_low_20
[»] chr8 (7 HSPs)
chr8 (1-242)||(7616295-7616536)
chr8 (14-62)||(14926902-14926950)
chr8 (15-58)||(27465457-27465500)
chr8 (14-62)||(4560604-4560652)
chr8 (19-62)||(39881646-39881689)
chr8 (14-62)||(3112225-3112273)
chr8 (14-62)||(7714344-7714392)
[»] chr1 (7 HSPs)
chr1 (14-62)||(32958739-32958787)
chr1 (23-67)||(15361808-15361852)
chr1 (15-61)||(10280752-10280798)
chr1 (19-59)||(4197174-4197214)
chr1 (16-60)||(23402135-23402179)
chr1 (14-62)||(24460321-24460369)
chr1 (14-62)||(33976280-33976328)
[»] chr4 (7 HSPs)
chr4 (19-62)||(47146046-47146089)
chr4 (15-62)||(2996675-2996722)
chr4 (19-61)||(29376006-29376048)
chr4 (19-61)||(46860021-46860063)
chr4 (21-62)||(39931301-39931342)
chr4 (14-62)||(11191599-11191647)
chr4 (14-62)||(54277243-54277291)
[»] chr6 (1 HSPs)
chr6 (24-61)||(3785652-3785689)
[»] chr3 (2 HSPs)
chr3 (14-52)||(9832675-9832713)
chr3 (14-42)||(44988365-44988393)
[»] chr5 (2 HSPs)
chr5 (16-61)||(1084061-1084106)
chr5 (14-54)||(34205351-34205391)
[»] chr2 (3 HSPs)
chr2 (21-61)||(14844908-14844948)
chr2 (14-62)||(16785280-16785328)
chr2 (14-62)||(40759262-40759310)


Alignment Details
Target: chr8 (Bit Score: 226; Significance: 1e-124; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 1 - 242
Target Start/End: Original strand, 7616295 - 7616536
Alignment:
Q  1 taatattaagctcgtttagattgacttatttgaacttatttattgtcataagcacttgtgagtgttttcagcttattttcataagctctaggattattta 100  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||  |||||||||||||||| |||||||||||||||||||||||||||||||    
T  7616295 taatattaagctcgtttagattgacttatttgaacttatctattgtcatattcacttgtgagtgtttttagcttattttcataagctctaggattattta 7616394  T
Q  101 tcatatgaaaacaatttgacttcacttttttgtttgttatatgaaaacaattcaaacttattcttctgctggtctatttatgaacataagattttatctt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7616395 tcatatgaaaacaatttgacttcacttttttgtttgttatatgaaaacaattcaaacttattcttctgctggtctatttatgaacataagattttatctt 7616494  T
Q  201 tatgttgaatgtcttttgttttcatatctgaaatttaatatt 242  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  7616495 tatgttgaatgtcttttgttttcatatctgaaatttaatatt 7616536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 14 - 62
Target Start/End: Original strand, 14926902 - 14926950
Alignment:
Q  14 gtttagattgacttatttgaacttatttattgtcataagcacttgtgag 62  Q
    |||| |||||||||||||||||||||||| || ||||||||||||||||    
T  14926902 gtttggattgacttatttgaacttatttactggcataagcacttgtgag 14926950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 15 - 58
Target Start/End: Complemental strand, 27465500 - 27465457
Alignment:
Q  15 tttagattgacttatttgaacttatttattgtcataagcacttg 58  Q
    ||||||||||||||||||||||||| ||||| ||||||||||||    
T  27465500 tttagattgacttatttgaacttatctattggcataagcacttg 27465457  T

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Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 14 - 62
Target Start/End: Complemental strand, 4560652 - 4560604
Alignment:
Q  14 gtttagattgacttatttgaacttatttattgtcataagcacttgtgag 62  Q
    |||| ||||||||||||||| ||||| ||||| ||||||||||||||||    
T  4560652 gtttggattgacttatttgagcttatctattgacataagcacttgtgag 4560604  T

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Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 19 - 62
Target Start/End: Original strand, 39881646 - 39881689
Alignment:
Q  19 gattgacttatttgaacttatttattgtcataagcacttgtgag 62  Q
    ||||||||||||||||||||| ||||| ||||| ||||||||||    
T  39881646 gattgacttatttgaacttatctattggcataaacacttgtgag 39881689  T

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Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 14 - 62
Target Start/End: Complemental strand, 3112273 - 3112225
Alignment:
Q  14 gtttagattgacttatttgaacttatttattgtcataagcacttgtgag 62  Q
    |||| ||||||||||| | | ||||||||||| ||||||||||||||||    
T  3112273 gtttggattgacttatgtaagcttatttattgacataagcacttgtgag 3112225  T

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Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 14 - 62
Target Start/End: Complemental strand, 7714392 - 7714344
Alignment:
Q  14 gtttagattgacttatttgaacttatttattgtcataagcacttgtgag 62  Q
    |||| ||||||||||||||| ||||| || |||||||| ||||||||||    
T  7714392 gtttggattgacttatttgagcttatataatgtcataaacacttgtgag 7714344  T

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Target: chr1 (Bit Score: 37; Significance: 0.000000000006; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 14 - 62
Target Start/End: Complemental strand, 32958787 - 32958739
Alignment:
Q  14 gtttagattgacttatttgaacttatttattgtcataagcacttgtgag 62  Q
    |||||||||||||||||||| ||||| || |||||||||||||||||||    
T  32958787 gtttagattgacttatttgagcttatctactgtcataagcacttgtgag 32958739  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 23 - 67
Target Start/End: Complemental strand, 15361852 - 15361808
Alignment:
Q  23 gacttatttgaacttatttattgtcataagcacttgtgagtgttt 67  Q
    |||||||||||||||||||| ||||||||||| |||||| |||||    
T  15361852 gacttatttgaacttatttactgtcataagcatttgtgactgttt 15361808  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 15 - 61
Target Start/End: Complemental strand, 10280798 - 10280752
Alignment:
Q  15 tttagattgacttatttgaacttatttattgtcataagcacttgtga 61  Q
    ||||||||||||||||||||| ||| ||||| |||||||| ||||||    
T  10280798 tttagattgacttatttgaacctatctattggcataagcaattgtga 10280752  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 59
Target Start/End: Original strand, 4197174 - 4197214
Alignment:
Q  19 gattgacttatttgaacttatttattgtcataagcacttgt 59  Q
    |||||||||||||||||||||  |||| |||||||||||||    
T  4197174 gattgacttatttgaacttatcaattggcataagcacttgt 4197214  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 16 - 60
Target Start/End: Complemental strand, 23402179 - 23402135
Alignment:
Q  16 ttagattgacttatttgaacttatttattgtcataagcacttgtg 60  Q
    |||||||||||||||||||||||| |||||   ||||||||||||    
T  23402179 ttagattgacttatttgaacttatctattggtgtaagcacttgtg 23402135  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 14 - 62
Target Start/End: Original strand, 24460321 - 24460369
Alignment:
Q  14 gtttagattgacttatttgaacttatttattgtcataagcacttgtgag 62  Q
    |||| ||||||||||||||||||||| || || ||| ||||||||||||    
T  24460321 gtttggattgacttatttgaacttatctactgacatgagcacttgtgag 24460369  T

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Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 14 - 62
Target Start/End: Complemental strand, 33976328 - 33976280
Alignment:
Q  14 gtttagattgacttatttgaacttatttattgtcataagcacttgtgag 62  Q
    |||| ||||||||||||||| |||||||| || ||| ||||||||||||    
T  33976328 gtttggattgacttatttgagcttatttaatgacatcagcacttgtgag 33976280  T

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Target: chr4 (Bit Score: 36; Significance: 0.00000000002; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 19 - 62
Target Start/End: Complemental strand, 47146089 - 47146046
Alignment:
Q  19 gattgacttatttgaacttatttattgtcataagcacttgtgag 62  Q
    ||||||||||||||||||||| ||||| ||||||||||||||||    
T  47146089 gattgacttatttgaacttatatattggcataagcacttgtgag 47146046  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 15 - 62
Target Start/End: Complemental strand, 2996722 - 2996675
Alignment:
Q  15 tttagattgacttatttgaacttatttattgtcataagcacttgtgag 62  Q
    ||||||||  ||||||||||||||||||||| ||||||||||| ||||    
T  2996722 tttagattagcttatttgaacttatttattgacataagcacttttgag 2996675  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 61
Target Start/End: Complemental strand, 29376048 - 29376006
Alignment:
Q  19 gattgacttatttgaacttatttattgtcataagcacttgtga 61  Q
    ||||| ||||||||||||||| ||||| |||||||||||||||    
T  29376048 gattggcttatttgaacttatctattgacataagcacttgtga 29376006  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 61
Target Start/End: Complemental strand, 46860063 - 46860021
Alignment:
Q  19 gattgacttatttgaacttatttattgtcataagcacttgtga 61  Q
    ||||||||||||||||||||| ||||  |||||||||||||||    
T  46860063 gattgacttatttgaacttatctattcacataagcacttgtga 46860021  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 21 - 62
Target Start/End: Original strand, 39931301 - 39931342
Alignment:
Q  21 ttgacttatttgaacttatttattgtcataagcacttgtgag 62  Q
    |||||||||||||| |||||||||| ||||| ||||||||||    
T  39931301 ttgacttatttgaatttatttattgacataaacacttgtgag 39931342  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 14 - 62
Target Start/End: Complemental strand, 11191647 - 11191599
Alignment:
Q  14 gtttagattgacttatttgaacttatttattgtcataagcacttgtgag 62  Q
    |||||||||| |||||||||  |||| | ||||||||||||||||||||    
T  11191647 gtttagattggcttatttgagtttatatcttgtcataagcacttgtgag 11191599  T

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Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 14 - 62
Target Start/End: Original strand, 54277243 - 54277291
Alignment:
Q  14 gtttagattgacttatttgaacttatttattgtcataagcacttgtgag 62  Q
    |||||||||||||||||||||||||| || || ||||| ||||| ||||    
T  54277243 gtttagattgacttatttgaacttatctagtgacataaacacttatgag 54277291  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 24 - 61
Target Start/End: Original strand, 3785652 - 3785689
Alignment:
Q  24 acttatttgaacttatttattgtcataagcacttgtga 61  Q
    |||||||||||||||||||||| |||||||||||||||    
T  3785652 acttatttgaacttatttattggcataagcacttgtga 3785689  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 14 - 52
Target Start/End: Original strand, 9832675 - 9832713
Alignment:
Q  14 gtttagattgacttatttgaacttatttattgtcataag 52  Q
    |||||||||||||||||||| ||||||||||| ||||||    
T  9832675 gtttagattgacttatttgagcttatttattgacataag 9832713  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 14 - 42
Target Start/End: Original strand, 44988365 - 44988393
Alignment:
Q  14 gtttagattgacttatttgaacttattta 42  Q
    |||||||||||||||||||||||||||||    
T  44988365 gtttagattgacttatttgaacttattta 44988393  T

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Target: chr5 (Bit Score: 30; Significance: 0.00000009; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 16 - 61
Target Start/End: Original strand, 1084061 - 1084106
Alignment:
Q  16 ttagattgacttatttgaacttatttattgtcataagcacttgtga 61  Q
    ||||||||||||||||||  ||||||| || |||||||||||||||    
T  1084061 ttagattgacttatttgagtttatttactgacataagcacttgtga 1084106  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 14 - 54
Target Start/End: Complemental strand, 34205391 - 34205351
Alignment:
Q  14 gtttagattgacttatttgaacttatttattgtcataagca 54  Q
    |||| |||||||||||||||||||||||| || ||||||||    
T  34205391 gtttggattgacttatttgaacttatttactgacataagca 34205351  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 21 - 61
Target Start/End: Original strand, 14844908 - 14844948
Alignment:
Q  21 ttgacttatttgaacttatttattgtcataagcacttgtga 61  Q
    |||||||||||||| |||| ||||| |||||||||||||||    
T  14844908 ttgacttatttgaagttatctattggcataagcacttgtga 14844948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 14 - 62
Target Start/End: Original strand, 16785280 - 16785328
Alignment:
Q  14 gtttagattgacttatttgaacttatttattgtcataagcacttgtgag 62  Q
    |||| |||||||||| |||| |||||||| ||||||||||| |||||||    
T  16785280 gtttggattgacttagttgagcttatttactgtcataagcatttgtgag 16785328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 14 - 62
Target Start/End: Complemental strand, 40759310 - 40759262
Alignment:
Q  14 gtttagattgacttatttgaacttatttattgtcataagcacttgtgag 62  Q
    |||| ||||| ||||||||| ||||| ||||| ||||||||||||||||    
T  40759310 gtttggattgccttatttgagcttatctattgacataagcacttgtgag 40759262  T

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