View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1717_low_30 (Length: 230)
Name: NF1717_low_30
Description: NF1717
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1717_low_30 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 150; Significance: 2e-79; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 51 - 230
Target Start/End: Complemental strand, 29041798 - 29041615
Alignment:
| Q |
51 |
tatataagaattgtacctcaaaataaacttgcaccggaatagcatatac--catagtgataagata--ggtaagatcataaatgagaaaagaagatcaag |
146 |
Q |
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| T |
29041798 |
tatataagaattgtacctcaaaataaacttgcacctgaatagcatatatatcatagtggtaagatataggtaagatcataaatgagaaaagaagatcaag |
29041699 |
T |
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| Q |
147 |
tcaagtctagaaatctacccaaaaatgaccaagtcaaaacttctgataaataaaagaaataataaataccaacaaatatttggt |
230 |
Q |
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| T |
29041698 |
tcaagtctagaaatctacccaaaaatgaccaagtcaaaacttctgataaataaaagaaataataaataccaacaaatatttggt |
29041615 |
T |
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