View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1717_low_31 (Length: 229)
Name: NF1717_low_31
Description: NF1717
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1717_low_31 |
 | |
|
| [»] chr1 (1 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 7 - 229
Target Start/End: Original strand, 38730592 - 38730814
Alignment:
| Q |
7 |
taggggacataacatcatgcataaccctttgaactcaatttaaaatgtcaacaacctttagaactacaaagccaaaagtgttaatagaatgttaaaacct |
106 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38730592 |
taggggacataacatcatgcataaccctttgaactcaatttaaaatgtcaacaacctttagaactacaaagccaaaagtgttaatagaatgttaaaacct |
38730691 |
T |
|
| Q |
107 |
ccggtcttataggtgctaggaagacaaacgtgtcaagtgcgttgccgcgtatatgtgatcaagtaattggttggttccactatattccgatcttgaatgg |
206 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
38730692 |
ccggtcttataggtgctaggaagacaaacgtgtcaagtgcgttgccgcgtatacgtgatcaagtaattggttggttccactatattccgatctagaatgg |
38730791 |
T |
|
| Q |
207 |
tcttgaatacgtctaccgtacat |
229 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
38730792 |
tcttgaatacgtctaccgtacat |
38730814 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University