View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1717_low_4 (Length: 403)
Name: NF1717_low_4
Description: NF1717
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1717_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 362; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 362; E-Value: 0
Query Start/End: Original strand, 16 - 385
Target Start/End: Complemental strand, 1436584 - 1436215
Alignment:
| Q |
16 |
atggccggatagcataaaaatgagaagattaataatgaaatttgcccaggctgattcgaatatgaatccggttggagactgaccaattagcagaggcaaa |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1436584 |
atggccggatagcataaaaatgagaagattaataatgaaatttgcccaggctgattcgaatatgaatccggttggagactgaccaattagcagaggcaaa |
1436485 |
T |
|
| Q |
116 |
aatctgaataatcttggaatatattgtacaaggatccctagtcgtagaagattttttgcataatttgctcctgatgaccccaaggaatttggtaggataa |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1436484 |
aatctgaataatcttggaatatattgtacaaggatccctagtcgtagaagattttttgcataatttgctcctgatgaccccaaggaatttggtaggataa |
1436385 |
T |
|
| Q |
216 |
acattatcattatctgcaaatatttcacaacatacatcataaactcatagtcttttacacagattgaaatcccttttcttctgtgtcaactacatatcat |
315 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| | |
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| T |
1436384 |
acattatcattatctgcaaatatttcacaacatacatcataaactcatagtcttttacacagattaaaatcccttttcttctgtgtcaactacatatcgt |
1436285 |
T |
|
| Q |
316 |
caagcacttgttcaattccacacattatttattaaggcatcaacgtgacaccgaggtaacatgcacagaa |
385 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
1436284 |
caagcacttgttcaattccacacattatttattaaggcatcaacgtgacaccgaggtaacatgcacagaa |
1436215 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 232; Significance: 1e-128; HSPs: 9)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 16 - 375
Target Start/End: Complemental strand, 28087903 - 28087544
Alignment:
| Q |
16 |
atggccggatagcataaaaatgagaagattaataatgaaatttgcccaggctgattcgaatatgaatccggttggagactgaccaattagcagaggcaaa |
115 |
Q |
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||||||||||||||||||||| |||||||| ||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
28087903 |
atggccggatagcataaaaatcagaagatttataatgaaatttgcccaggctgactcgaatatgaatccagttggagactgaccaattagcagaggcaaa |
28087804 |
T |
|
| Q |
116 |
aatctgaataatcttggaatatattgtacaaggatccctagtcgtagaagattttttgcataatttgctcctgatgaccccaaggaatttggtaggataa |
215 |
Q |
| |
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|||||||| ||||| ||||||||||| | |||||| ||||| ||||||||||| || |||||||||||||||||| |||||||||| |||||||||||| |
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| T |
28087803 |
aatctgaacaatctgggaatatattgaataaggattcctagacgtagaagattcttggcataatttgctcctgatatccccaaggaagttggtaggataa |
28087704 |
T |
|
| Q |
216 |
acattatcattatctgcaaatatttcacaacatacatcataaactcatagtcttttacacagattgaaatcccttttcttctgtgtcaactacatatcat |
315 |
Q |
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| | ||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||| ||||||||||||||| ||||||| |||||||| | |
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| T |
28087703 |
atagtatcattatctgcaaatatttcacaacatacatcataaacttgtagtctttttcacagattaaaatcccttttcttccgtgtcaaatacatatcgt |
28087604 |
T |
|
| Q |
316 |
caagcacttgttcaattccacacattatttattaaggcatcaacgtgacaccgaggtaac |
375 |
Q |
| |
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||| ||||| ||||||||||| | ||||||||||||||||||| ||||||||||||| |
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|
| T |
28087603 |
caaacacttattcaattccacgtactatttattaaggcatcaacacaacaccgaggtaac |
28087544 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 53 - 249
Target Start/End: Complemental strand, 28029022 - 28028826
Alignment:
| Q |
53 |
aaatttgcccaggctgattcgaatatgaatccggttggagactgaccaattagcagaggcaaaaatctgaataatcttggaatatattgtacaaggatcc |
152 |
Q |
| |
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||||||||||||||||| || |||||| || ||||| |||| | ||||||| | ||||||||||||||||||| ||| ||| | ||||||| |||| |
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| T |
28029022 |
aaatttgcccaggctgactcatatatgattcgggttgaagaccggccaattacccaaggcaaaaatctgaataattttgcaattaactgtacaaagatca |
28028923 |
T |
|
| Q |
153 |
ctagtcgtagaagattttttgcataatttgctcctgatgaccccaaggaatttggtaggataaacattatcattatctgcaaatatttcacaacata |
249 |
Q |
| |
|
|||| | ||||||||| || |||||| ||||| ||| |||||||||||||||||||||| || || ||||||||||||| ||||||||||| |||| |
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| T |
28028922 |
ctagacttagaagattcttggcataaattgcttgtgaagaccccaaggaatttggtaggacaatcaatatcattatctgccaatatttcacagcata |
28028826 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 26 - 199
Target Start/End: Complemental strand, 28530848 - 28530675
Alignment:
| Q |
26 |
agcataaaaatgagaagattaataatgaaatttgcccaggctgattcgaatatgaatccggttggagactgaccaattagcagaggcaaaaatctgaata |
125 |
Q |
| |
|
|||||||| ||||||||||| || |||||||| |||| || || || ||||||||||| ||||||||| ||| ||||||||| ||||| ||| |||| |
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| T |
28530848 |
agcataaacatgagaagatttatgatgaaattagcccttgccgactcaaatatgaatccagttggagaccttccatttagcagagacaaaattctaaata |
28530749 |
T |
|
| Q |
126 |
atcttggaatatattgtacaaggatccctagtcgtagaagattttttgcataatttgctcctgatgaccccaag |
199 |
Q |
| |
|
|||||||||||||||| ||||| ||| | ||||||||||| || |||||||||||||||||| | |||||| |
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| T |
28530748 |
atcttggaatatattgcacaagaatcaccgcacgtagaagattcttagcataatttgctcctgataaacccaag |
28530675 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 47 - 215
Target Start/End: Complemental strand, 27909324 - 27909156
Alignment:
| Q |
47 |
ataatgaaatttgcccaggctgattcgaatatgaatccggttggagactgaccaattagcagaggcaaaaatctgaataatcttggaatatattgtacaa |
146 |
Q |
| |
|
||||| ||||||||||||||||| | ||||||| || | ||||||||| |||| |||| ||||||||||| |||||||||| |||| | | ||| ||| |
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| T |
27909324 |
ataattaaatttgcccaggctgacacaaatatgattcggattggagacttgccaaatagccgaggcaaaaatttgaataatctcggaacaaactgtgcaa |
27909225 |
T |
|
| Q |
147 |
ggatccctagtcgtagaagattttttgcataatttgctcctgatgaccccaaggaatttggtaggataa |
215 |
Q |
| |
|
|||| ||| |||||||||| || ||||||||||| ||||| |||||||||||||||| |||||||| |
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|
| T |
27909224 |
agatcactataagtagaagattcttcgcataatttgcacctgaagaccccaaggaatttgctaggataa |
27909156 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 176 - 351
Target Start/End: Original strand, 27926107 - 27926281
Alignment:
| Q |
176 |
taatttgctcctgatgaccccaaggaatttggtaggataaacattatcattatctgcaaatatttcacaacatacatcataaactcatagtcttttacac |
275 |
Q |
| |
|
||||||||||| ||||||||| ||||| |||||||| |||| ||||||||||||||| |||||||||||||| ||||||||| || |||||| ||| |
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| T |
27926107 |
taatttgctccatatgaccccagggaatgtggtagga-aaacgatatcattatctgcaagtatttcacaacatatatcataaacctgtactctttttcac |
27926205 |
T |
|
| Q |
276 |
agattgaaatcccttttcttctgtgtcaactacatatcatcaagcacttgttcaattccacacattatttattaag |
351 |
Q |
| |
|
|| || |||||||||| |||| |||||| ||||| | || |||||||||||||||||| | ||||||||||| |
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|
| T |
27926206 |
aggttaaaatccctttccttccatgtcaaatacatgttgccagtcacttgttcaattccacatactatttattaag |
27926281 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 28 - 202
Target Start/End: Complemental strand, 27988508 - 27988334
Alignment:
| Q |
28 |
cataaaaatgagaagattaataatgaaatttgcccaggctgattcgaatatgaatccggttggagactgaccaattagcagaggcaaaaatctgaataat |
127 |
Q |
| |
|
|||||||||||||||| ||||| |||||||| ||||| || | ||||||| | ||||||||| | ||||||||| |||||||||||||||||||| |
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|
| T |
27988508 |
cataaaaatgagaagacctataattaaatttgctcaggccgacgcaaatatgatttgggttggagatcggccaattagccgaggcaaaaatctgaataat |
27988409 |
T |
|
| Q |
128 |
cttggaatatattgtacaaggatccctagtcgtagaagattttttgcataatttgctcctgatgaccccaaggaa |
202 |
Q |
| |
|
|||||||||| ||||||| |||| |||| ||| |||||| || | ||||| |||| |||| |||||||||||| |
|
|
| T |
27988408 |
tttggaatatactgtacaaagatcactagaggtacaagattcttagtataatgtgcttctgaagaccccaaggaa |
27988334 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 85 - 242
Target Start/End: Complemental strand, 28069348 - 28069191
Alignment:
| Q |
85 |
ggttggagactgaccaattagcagaggcaaaaatctgaataatcttggaatatattgtacaaggatccctagtcgtagaagattttttgcataatttgct |
184 |
Q |
| |
|
||||| |||| | ||||||| | |||||||||||||||||||| ||| |||||| || |||| |||| ||| | || |||||| || |||| | ||||| |
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|
| T |
28069348 |
ggttgaagaccggccaattaaccgaggcaaaaatctgaataattttgcaatatactggacaaagatcaatagacttaaaagattcttagcattaattgct |
28069249 |
T |
|
| Q |
185 |
cctgatgaccccaaggaatttggtaggataaacattatcattatctgcaaatatttca |
242 |
Q |
| |
|
||||| |||||||| |||||||||||| || || ||||| ||||||| ||||||||| |
|
|
| T |
28069248 |
cctgaagaccccaatgaatttggtagggcaatcaatatcagtatctgccaatatttca |
28069191 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 163 - 242
Target Start/End: Complemental strand, 27894568 - 27894489
Alignment:
| Q |
163 |
aagattttttgcataatttgctcctgatgaccccaaggaatttggtaggataaacattatcattatctgcaaatatttca |
242 |
Q |
| |
|
|||||| |||||||||||| ||||||||| |||||| ||||| | || ||||| ||||||||||||||||||||||| |
|
|
| T |
27894568 |
aagattctttgcataattttctcctgatgttcccaagtgttttggaatgacaaacaatatcattatctgcaaatatttca |
27894489 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 85 - 138
Target Start/End: Complemental strand, 28013859 - 28013806
Alignment:
| Q |
85 |
ggttggagactgaccaattagcagaggcaaaaatctgaataatcttggaatata |
138 |
Q |
| |
|
|||||||||||| ||||||| | ||||||||||||||||||| ||| |||||| |
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|
| T |
28013859 |
ggttggagactggccaattatcctaggcaaaaatctgaataattttgcaatata |
28013806 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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