View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1717_low_5 (Length: 346)
Name: NF1717_low_5
Description: NF1717
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1717_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 302; Significance: 1e-170; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 1 - 331
Target Start/End: Original strand, 24515072 - 24515402
Alignment:
| Q |
1 |
cctatggctgtaataattccactgaataaaacctgacggcgacgttttttcatcgtgttcttgttttcttccctaccatccttgatattttcaagcatgt |
100 |
Q |
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| T |
24515072 |
cctatggctgtaataattccactgaataaaacctgacggcgacgttttttcatcgtgttcttgttttcttccctaccaaccttgatattttcaagcatgt |
24515171 |
T |
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| Q |
101 |
cacaaaattatttatcacaattaatatctacattacataccaaataatagcaaagaaaattaagttaattaaaacctgtttgctcttcttatcaggagga |
200 |
Q |
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| T |
24515172 |
cacaaaattatttatcacaattaatatctacattacataccaaataatagcaaagaaaattaagttaattaaaacctgtttgctcttcttatcaggagga |
24515271 |
T |
|
| Q |
201 |
ggtgctgttggttctggtataaagttggcaacaattgcgaagaatatgacaccagnnnnnnnctagatgaagaagaaaataaaacaacattgttagaata |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
24515272 |
ggtgctgttggttctggtataaagttggcaacaattgcaaagaatatgacaccagaaaaaaactagatgaagaagaaaataaaacaacattgttagaata |
24515371 |
T |
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| Q |
301 |
aacatgagagaacaatgtagagtactagaat |
331 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
24515372 |
aacatgagagaacaatgtagagtactagaat |
24515402 |
T |
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