View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1717_low_8 (Length: 334)
Name: NF1717_low_8
Description: NF1717
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1717_low_8 |
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Alignment Details
Target: chr7 (Bit Score: 290; Significance: 1e-163; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 18 - 322
Target Start/End: Complemental strand, 35560514 - 35560209
Alignment:
| Q |
18 |
ggcataactgcatgaaagtttagttaagaaattaaatgagaaaactaatcactaaagtgagtatttaaacaagggaatctaatattcattggcttgatct |
117 |
Q |
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| T |
35560514 |
ggcataactgcatgaaagtttagttaagaaattaaatgagaaaactaatcactaaagtgagtatttaaacaagggaatctaatattcattggcttgatct |
35560415 |
T |
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| Q |
118 |
aacgagaagactagactaatcactaaatgctcgatcaattgaatctctcctaagattctaacaaaaagaaaggagttgcatgtgagattaatcagtcaat |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
35560414 |
aacgagaagactagactaatcactaaatgctcgatcaatcgaatctctcctaagattctaacaaaaagaaaggagttgcatgtgagattgatcagtcaat |
35560315 |
T |
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| Q |
218 |
ttcatctcgaaactttcattttcttat-aacttagtccctaaatcatgataagcagttaaaaagttcttaaacagcaaaaaatacaacagtttgttcatt |
316 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35560314 |
ttcatctcgaaactttcattttcttatcaacttagtccctaaatcatgataagcagttaaaaagttcttaaacagcaaaaaatacaacagtttgttcatt |
35560215 |
T |
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| Q |
317 |
gagtat |
322 |
Q |
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|||||| |
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| T |
35560214 |
gagtat |
35560209 |
T |
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