View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1717_low_9 (Length: 331)
Name: NF1717_low_9
Description: NF1717
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1717_low_9 |
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Alignment Details
Target: chr6 (Bit Score: 298; Significance: 1e-167; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 18 - 323
Target Start/End: Original strand, 6397949 - 6398254
Alignment:
| Q |
18 |
caagatcatatgattatacatgtagaaaatttcaagattggttagtttctcaattgcttcaatcatcttcttgtcataacataaaccttcttagctattg |
117 |
Q |
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| T |
6397949 |
caagatcatatgattatacatgtagaaaatttcaagattggttagtttctcaattgcttcaatcatcttcttgtcataacataaaccttcttagctattg |
6398048 |
T |
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| Q |
118 |
tgacctttcaaataaaattccaacttcaccaaactaacatgaagtcgctgaagtaatataacaactaaaaaacaacttttttacaagaaaatgaaaagaa |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6398049 |
tgacctttcaaataaaattccaacttcaccaaactaacatgaagtcgctgaagtaatataacaactaaaaaacaacttttttacaagaaaatgaaaagaa |
6398148 |
T |
|
| Q |
218 |
gcaaaataactacaacaatactatggtaaacctctacattgagaaacaatgtcacccttggctctgaggtttgcaatagccctaaaggacgcatgcatag |
317 |
Q |
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| T |
6398149 |
gcaaaataactacaacaatattatggtaaacctctacattgagaaacaatgtcacccttggctctgaggtttacaatagccctaaaggacgcatgcatag |
6398248 |
T |
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| Q |
318 |
tataat |
323 |
Q |
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|||||| |
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| T |
6398249 |
tataat |
6398254 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 82; Significance: 1e-38; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 38 - 187
Target Start/End: Complemental strand, 15094653 - 15094504
Alignment:
| Q |
38 |
tgtagaaaatttcaagattggttagtttctcaattgcttcaatcatcttcttgtcataacataaaccttcttagctattgtgacctttcaaataaaattc |
137 |
Q |
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| T |
15094653 |
tgtagaaattttaaagattggttagtttctcatttgcttaaatcatcttctccctataactaaaaccttcctagctaatgtgacctttcaaagaaaattc |
15094554 |
T |
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| Q |
138 |
caacttcaccaaactaacatgaagtcgctgaagtaatataacaactaaaa |
187 |
Q |
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| T |
15094553 |
caacttctccaatttagcatgaagtcgctgaagtaatataacaactaaaa |
15094504 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 56 - 167
Target Start/End: Original strand, 34297348 - 34297459
Alignment:
| Q |
56 |
tggttagtttctcaattgcttcaatcatcttcttgtcataacataaaccttcttagctattgtgacctttcaaataaaattccaacttcaccaaactaac |
155 |
Q |
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|||||||||| || |||||||||||||||||||| |||||| | ||| || ||||| |||| ||||||| | ||| ||||||||| |||||||| | |
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| T |
34297348 |
tggttagttttccatttgcttcaatcatcttcttgccataacttggaccgtccaagctagtgtgtcctttcatacaaatctccaacttctccaaactacc |
34297447 |
T |
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| Q |
156 |
atgaagtcgctg |
167 |
Q |
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|||||| ||||| |
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| T |
34297448 |
atgaagccgctg |
34297459 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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