View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1718-Insertion-3 (Length: 324)
Name: NF1718-Insertion-3
Description: NF1718
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1718-Insertion-3 |
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| [»] chr8 (3 HSPs) |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 310; Significance: 1e-175; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 310; E-Value: 1e-175
Query Start/End: Original strand, 7 - 324
Target Start/End: Complemental strand, 8974334 - 8974017
Alignment:
| Q |
7 |
actttgtatgtaatctttgataatttctccattggtttggttaataatgatatatggaagctggaaccctaaaagttgtgatagattattttgtgaagtg |
106 |
Q |
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| T |
8974334 |
actttgtatgtaatctttgataatttctccattggtttggttaataatgatgtatggaagctggaaccctaaaagttgtgatagattattttgtgaagtg |
8974235 |
T |
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| Q |
107 |
tttgatataataacagctcctacaactattactgtaagcaaattagaaacttgatcaagaagagttccattcttgtcttcacagacaacaatcttacttt |
206 |
Q |
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| T |
8974234 |
tttgatataataacagctcctacaactattactgtaagcaaattagaaacttgatcaaaaagagttccattcttgtcttcacagacaacaatcttacttt |
8974135 |
T |
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| Q |
207 |
tcactttgattagttgtgtaatattgtcacacttacccatgaaaacaattggaatattactagcagagaagtttcctagataaaaagataagccagagag |
306 |
Q |
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| T |
8974134 |
tcactttgattagttgtgtaatattgtcacacttacccatgaaaacaattggaatattactagcagagaagtttcctagataaaaagataagccagagag |
8974035 |
T |
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| Q |
307 |
tgagactccattaccaag |
324 |
Q |
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| T |
8974034 |
tgagactccattaccaag |
8974017 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 11 - 324
Target Start/End: Complemental strand, 8962934 - 8962621
Alignment:
| Q |
11 |
tgtatgtaatctttgataatttctccattggtttggttaataatgatatatggaagctggaaccctaaaagttgtgatagattattttgtgaagtgtttg |
110 |
Q |
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| T |
8962934 |
tgtatgtaatctttgaccatttctccatttttctggttaataatgatggatggaagcaggtaccgtaagtcttctgatagatcatcttgtgttgtgtttg |
8962835 |
T |
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| Q |
111 |
atataataacagctcctacaactattactgtaagcaaattagaaacttgatcaagaagagttccattcttgtcttcacagacaacaatcttacttttcac |
210 |
Q |
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| T |
8962834 |
atataaaaatagctcctacaacttctgctttaaccacattataaatttgattagaaagactttcattcttgtcttcacaaaccacaatctcgctcttcac |
8962735 |
T |
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| Q |
211 |
tttgattagttgtgtaatattgtcacacttacccatgaaaacaattggaatattactagcagagaagtttcctagataaaaagataagccagagagtgag |
310 |
Q |
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| T |
8962734 |
tctgattagttctgtaaaattgtcacacatacctttgaaaacaatgggaatattactagcagagaagtttcctatataggaagagaagccggtgagtgag |
8962635 |
T |
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| Q |
311 |
actccattaccaag |
324 |
Q |
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| T |
8962634 |
actccattaccaag |
8962621 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 206 - 324
Target Start/End: Original strand, 8946351 - 8946469
Alignment:
| Q |
206 |
ttcactttgattagttgtgtaatattgtcacacttacccatgaaaacaattggaatattactagcagagaagtttcctagataaaaagataagccagaga |
305 |
Q |
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| T |
8946351 |
ttcactttgattaattctgtaacattgtcgcacaaacccatgaaaacaattggcaaattgctagcagagaaatttcctagataattagaccaacctgtga |
8946450 |
T |
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| Q |
306 |
gtgagactccattaccaag |
324 |
Q |
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| T |
8946451 |
gtgagactccattaccaag |
8946469 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 74; Significance: 6e-34; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 107 - 324
Target Start/End: Original strand, 21687400 - 21687617
Alignment:
| Q |
107 |
tttgatataataacagctcctacaactattactgtaagcaaattagaaacttgatcaagaagagttccattcttgtcttcacagacaacaatcttacttt |
206 |
Q |
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| T |
21687400 |
tttgatataaaaacacctccaacaacttttgctttatacacattaaacatttgttcatgaagagtttcattattgccttcacaaaccacaatctttctct |
21687499 |
T |
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| Q |
207 |
tcactttgattagttgtgtaatattgtcacacttacccatgaaaacaattggaatattactagcagagaagtttcctagataaaaagataagccagagag |
306 |
Q |
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| T |
21687500 |
tcactgtgtttaattctttaacattgtcacacatacccataaaaacaattggaaaattgttagcagagaagtttcctagatagaaagacaaaccagtgag |
21687599 |
T |
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| Q |
307 |
tgagactccattaccaag |
324 |
Q |
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| T |
21687600 |
tgagactccattaccaag |
21687617 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 169 - 213
Target Start/End: Original strand, 34963079 - 34963123
Alignment:
| Q |
169 |
agttccattcttgtcttcacagacaacaatcttacttttcacttt |
213 |
Q |
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| T |
34963079 |
agttccattcttgtcttcacacactataatcttgcttttcacttt |
34963123 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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