View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1718-Insertion-6 (Length: 388)
Name: NF1718-Insertion-6
Description: NF1718
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1718-Insertion-6 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 353; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 353; E-Value: 0
Query Start/End: Original strand, 8 - 388
Target Start/End: Complemental strand, 33039994 - 33039614
Alignment:
| Q |
8 |
aatatcctcccaataacacctgccattgatatctgaccaataataattgttatctaaaattcaaaatcaatggataattaagtggttaattttaatatgg |
107 |
Q |
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| T |
33039994 |
aatatcctcccaataacacatgccattgatatctgaccaataataattgttatctaaaattcaaaatcaatggataattaagtggttaatttcaatatgg |
33039895 |
T |
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| Q |
108 |
aaaaatcagttctgcgtattacaaagtttaattgcttaaaaaggggaagctctccaataaattggaatcatgaacacgtgttagacactaattagaaaat |
207 |
Q |
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| T |
33039894 |
aaaaatcagttctgcgtattacaaagtttaattacttaaaaaggggaagctctccaataaattggaatcatgaacacgtgttagacactaattagaaaat |
33039795 |
T |
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| Q |
208 |
agaaaaagacattatcatcatgaatacttatcaaaactgagagtatctttaatggactctaactaaacaacactaaccaaaatgtttattgtaaataatt |
307 |
Q |
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| T |
33039794 |
agaaaaagacattatcatcatgaatacttatcaaaactgagagtatctttagtggactctaactaaacaacactaactaaaatgtttattggaaataatt |
33039695 |
T |
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| Q |
308 |
ataaggcaagaatatatttaattgattaaaaaccaaccatgtcacagaatttaaaatttctaatactatctcagttgagag |
388 |
Q |
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| T |
33039694 |
ataaagcaagaatatatttaattgattaaaaaccaaccatgtcacagaatttaaaatttctaatactatctcagttgagag |
33039614 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 63 - 388
Target Start/End: Complemental strand, 39953731 - 39953396
Alignment:
| Q |
63 |
aaaattcaaaatcaatggataattaagtggttaattttaatatggaaaaatcagttctgcgtattacaaagtttaattgcttaaaaaggggaagctctcc |
162 |
Q |
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| T |
39953731 |
aaaattcaaatccaatggataattaagtagttaatttcaataaggaaaaatcagttctacgtattacgaagtttaattact-aaaaaggggaagctctcc |
39953633 |
T |
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| Q |
163 |
aataaattggaatcatgaacacgtgttagacactaattagaaaatagaaaaagacattatcatcatgaatacttatcaaaactgagagtatctttaatgg |
262 |
Q |
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||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||| ||||||||| ||||||||| | ||| |
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| T |
39953632 |
aataaattggaataatgaacacgtgttagacactaattagaacatagaaaaagacattataatcatgaatactcatcaaaactaagagtatctct-gtgg |
39953534 |
T |
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| Q |
263 |
actctaactaaacaacactaaccaaaatgtttattgtaaataattataaggca----------agaatatatttaattgat--taaaaaccaaccatgtc |
350 |
Q |
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| T |
39953533 |
actctaactaaacaacactaactaaaatgtttatggtaaataattataaagcaaggaagcatgagaatatatttaattgattataaaaaccaatttagtc |
39953434 |
T |
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| Q |
351 |
acagaatttaaaatttctaatactatctcagttgagag |
388 |
Q |
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| T |
39953433 |
acagaatttaaaatttctaatactatctcagttgagag |
39953396 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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