View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1718-Insertion-8 (Length: 783)
Name: NF1718-Insertion-8
Description: NF1718
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1718-Insertion-8 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 607; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 607; E-Value: 0
Query Start/End: Original strand, 8 - 783
Target Start/End: Complemental strand, 23522873 - 23522089
Alignment:
| Q |
8 |
aaatatgctcttatatattatatcaatgcatctagcctagattatggtttgannnnnnn--aatcaattgatcatagtcaatttgtaatgtatcttgttt |
105 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
23522873 |
aaatatgctcttatatattatatcaatgcatctagcctagattatggtttgattgttttttaatcaattgatcatagtcaatttgtaatgtatcttgttt |
23522774 |
T |
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| Q |
106 |
tggattttgtttttcaggtgattaattgtgaagagaagacggtgatagagtgctagcataggccatatataagtaaaaatagatcacagataatagactg |
205 |
Q |
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| T |
23522773 |
tggattttgtttttcaggtgattaattgtgaagagaagacggtgatagagtgctagcataggccatatataagtgaaaatagatcacagataacagactg |
23522674 |
T |
|
| Q |
206 |
aagatgatgctcaactatatagatatatggtagaggattaaataggtaatttatgatcacagtttgtgtacttctgggc-tttattttcctttgtaatgg |
304 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
23522673 |
aagatgatgctcaactatatagatatatggtagaggattaaatagttaatttatgatcacagtttgtgtacttctgggcttttattttcctttgtaatgg |
23522574 |
T |
|
| Q |
305 |
ctatataaatgctactcaatattaaataatactagtaaatatcttctcttaaattcttttgcaagtaagaaagttctaagttctaatctaaccattgggt |
404 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
23522573 |
ctatataaatgctactcaatattaaataatactagtacatatcttctcttaaattcttttgcaagtaagatagttctaagttctaatctaaccattgggt |
23522474 |
T |
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| Q |
405 |
tggttttaatttactcgagtttatttaggaaagaaaaaatgtagattattaagagga----nnnnnnnnnaaaaggcaaaatgaattatattacgattcc |
500 |
Q |
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| T |
23522473 |
tggttttaatttactcgagtttatttaggaaagaaaaaatgtagattattaagaggattttttttttaaaaaaaggcaaaataaattatattacgattcc |
23522374 |
T |
|
| Q |
501 |
taagaacaagattagttagagaaaaaccaaaagatcacaaagtcaagatacgttggaaatggtgaacaaaacaacaagcat--nnnnnnnnntcaaaatt |
598 |
Q |
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| T |
23522373 |
taagaacaaggttagttagagaaaaaccaaaagatcacaaagtcaagatacgttggaaatagtgaacaaaacaacaagcatgaaaaaaaaaatcaaaatt |
23522274 |
T |
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| Q |
599 |
aacttatgccaatacacaataaagggctaaaccatcggctatgataatcaaaagcaaaattgtcggttttttcctttaaccaccaaaaagaaacaacaga |
698 |
Q |
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| T |
23522273 |
aacttatgccaatacacaataaagggttaaaccatcggctatgataatcaaaagcaaaattgtcggttttttcctttaaccaccaaaaagaaacaacagg |
23522174 |
T |
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| Q |
699 |
ctatgataatcaaaatcaaaagttgtcggtttttgcctttaaccacaaaaaagaaagaagcttaacgttgtcaataagctgtagc |
783 |
Q |
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| T |
23522173 |
ctatgataatcaaaagcaaaagttgtcgatttttgcctttaaccaccaaaaagaaagaagcttaacgttgttaataagctgtagc |
23522089 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 116 - 309
Target Start/End: Complemental strand, 23517431 - 23517234
Alignment:
| Q |
116 |
ttttcaggtgattaattgtgaagagaagacggtgatagagtgctagca---------taggccatatataagtaaaaatagatcacagataatagactga |
206 |
Q |
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||||||||||||||||| |||||||||||||||||| ||||| || || ||||||||||| | | || |||||||||||||| || || |
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| T |
23517431 |
ttttcaggtgattaattatgaagagaagacggtgatggagtgataacaaattaacaataggccatataaatg---aagtagatcacagataactgatgga |
23517335 |
T |
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| Q |
207 |
agatgatgctcaactatatagatatatggtagaggattaaataggtaatttatgatcacagtttgtgtacttctgggctttattttcctttgtaatggct |
306 |
Q |
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| T |
23517334 |
agatgatgctcaactataactatatatagtagaggatgaaatagttaatttatgatcatagtttgtgttctgc--gtttttactttcctttgtaatggct |
23517237 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 730 - 781
Target Start/End: Original strand, 38390809 - 38390860
Alignment:
| Q |
730 |
tttgcctttaaccacaaaaaagaaagaagcttaacgttgtcaataagctgta |
781 |
Q |
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| T |
38390809 |
tttgcctttaaccaccaaaacgagagaagcttaacattgtcaataagctgta |
38390860 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000005; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 730 - 778
Target Start/End: Complemental strand, 12163139 - 12163091
Alignment:
| Q |
730 |
tttgcctttaaccacaaaaaagaaagaagcttaacgttgtcaataagct |
778 |
Q |
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| T |
12163139 |
tttgtctttaaccaccaaaaagaaagaagcttaacattatcaataagct |
12163091 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 730 - 779
Target Start/End: Complemental strand, 14557206 - 14557157
Alignment:
| Q |
730 |
tttgcctttaaccacaaaaaagaaagaagcttaacgttgtcaataagctg |
779 |
Q |
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||||||||||||||| |||| || ||||||||||| ||||||||||||| |
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| T |
14557206 |
tttgcctttaaccactaaaatgagagaagcttaacactgtcaataagctg |
14557157 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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